BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03650.1
Length=1909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477609 jgi|Araly1|477609|fgenesh2_kg.3__310__AT3G03650.1 2431 0.0
> Ahg477609 jgi|Araly1|477609|fgenesh2_kg.3__310__AT3G03650.1
Length=1827
Score = 2431 bits (1316), Expect = 0.0
Identities = 1642/1789 (92%), Gaps = 64/1789 (4%)
Strand=Plus/Plus
Query 137 TGGATCTACACAATCTTTC-TTCCTCTTCTTCTATGAATCTGTTCATCGTAATTTCAGAT 195
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 87 TGGATCTACACGATCTTTCTTTCCTCTTCTTCTATGAATCTGTTCATCGTAATTTCAGAT 146
Query 196 TCTTGATATATGATTCCTTTTCTCCAATCTCTTCTCTTAG---C-TCTCAGAGATGGGTG 251
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 147 TCTTGATATATGATTCCTTTTCTCCAATCTCTTCTCTTAGTTTCTTCTCAGAGATGGGTG 206
Query 252 AGAAAACAAACTCACGTTATCTCGGTGTAATCATCACTCGAAAATCTATAATTTTCTTGT 311
||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 207 AGAGATCAAACTCACGTTATCTCGGAGTAATCATCACTCGAAAATCTATAATTTTCTTG- 265
Query 312 TC-ATATCAATCATCACCGTCCTTTCTTGGTTTTTTATCTTTTCTTCCACAAACCCTAAC 370
|| ||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 266 TCGATATCGATCCTCACCGTCCTTTCTTGGTTCTTAATCTTTTCTTCCACAAACCCTAAC 325
Query 371 CGAGTTCTCGATCACATCTCAGTATCAGAATCCACAGATGTACCTCTCATCATCATCAAG 430
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 CGCGTTCTCGATTACATCTCAGTATCAGAATCCACAGATGTACCTCTCATCATCATCAAG 385
Query 431 AACTCAAACAGTTCTCCACAAAACAACG------CACCAAAACCCCaaaacagagaagga 484
|||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||
Sbjct 386 AACTCAAACACTTCTCCTCAAAACAACGCCATATCACCAAATCCCCAAAACAGAGAAGGA 445
Query 485 gcagaaacagaggaacc-cattaaagaaaacagaggaggaacaaaaacagaGTCATCCAT 543
||| ||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 446 GCACAAACAGAGGGACCTGA-TAATGAAAACAGAGGAGGAACAAAAACAGAGTCATCCAT 504
Query 544 GAATCAAAACAGAGGCGAAACCCTCCGGTGTATCCA-AAGGGTTTCTCCTTCTCCAAGGC 602
|||||||||||||| | ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 505 GAATCAAAACAGAGTCAAAACCCTCCGGTGTATCCAGAA-GGTTTCTCCTTCTCCAAGGC 563
Query 603 CATTGAAAGTCTACATGTATGATATGAGTCCAGAGTTTCATTTTGGGTTATTGGGTTGGA 662
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 564 CATTGAAAGTCTACATGTATGATATGAGTCCAGAGTTTCACTTTGGGTTATTGGGTTGGA 623
Query 663 AACCAGAGAGAAACGGTGTCGTTTGGCCTGATATCAGAGTCAATGTTCCTCACCATCCAG 722
||||||| ||||||| ||||||||||| |||||||| |||| |||||||||||||||||
Sbjct 624 AACCAGATAGAAACGACGTCGTTTGGCCAGATATCAGGGTCATTGTTCCTCACCATCCAG 683
Query 723 GTGGTCTTAACTTGCAGCACAGTGTTGAGTATTGGCTCACATTAGATCTTTTGTTCTCTG 782
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 684 GTGGTCTTAACTTGCAGCATAGTGTTGAGTACTGGCTAACATTAGATCTTTTGTTCTCTG 743
Query 783 AGCTTCCAGAAGATTCTAGAAGCTCTCGGGCCGCGATACGTGTAAAGAACTCGAGCGAAG 842
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 744 AGCTTCCAGAAGATTCTAGAAGCTCTCGGGCCGCGGTACGTGTAAAGAACTCGAGTGAAG 803
Query 843 CTGATGTCGTGTTCGTGCCCTTCTTCTCTTCATTGAGCTATAACCGATTCTCTAAGGTTA 902
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 804 CGGATGTAGTGTTCGTGCCGTTCTTCTCTTCATTGAGCTATAACCGATTCTCTAAGGTTA 863
Query 903 ACCAAAAGCAGAAGAAGAGCCAGGACAAAGAGTTGCAGGAAAATGTGGTGAAATACGTAA 962
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 864 ACCAAAAGCAGAAGAAGAGCCAAGACAAAGAGTTGCAGGTAAATGTGGTGAAATACGTAA 923
Query 963 CGTCCCAAAAAGAGTGGAAGACCTCAGGAGGGAAGGATCATGTGATCATGGCGCATCATC 1022
|||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct 924 CGTCTCAAAAAGAGTGGAAGATCTCAGGAGGGAAGGATCATGTGATAATGGCACATCATC 983
Query 1023 CGAATAGTATGTCGACGGCAAGGCATAAGCTATTTCCGGCGATGTTTGTGGTCGCTGACT 1082
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 984 CGAATAGTATGTCGACGGCAAGGCATAAGCTATATCCGGCGATGTTTGTGGTCGCTGACT 1043
Query 1083 TTGGTAGATACTCGCCACATGTTGCCAATGTTGACAAAGACATTGTGGCTCCATACAAAC 1142
||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 1044 TTGGTAGATACTCACCACATGTTGCCAATATTGATAAAGACATTGTTGCTCCATACAAAC 1103
Query 1143 ACCTTGTTCCATCGTATGTTAATGACACATCGGGCTTTGATGGCCGTCCGATCTTGCTCT 1202
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 ACCTTGTTCCATCGTACGTTAATGACACATCGGGCTTTGATGGCCGTCCGATCTTGCTCT 1163
Query 1203 ACTTCCAAGGAGCCATCTACCGCAAAGCTGGTGGATTTGTGAGACAAGAGCTATATAATC 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 ACTTCCAAGGAGCCATCTACCGCAAAGCTGGTGGATTTGTGAGACAAGAGCTATATAA-- 1221
Query 1263 TTCTCAAAGAAGAAAAAGACGTCCACTTCTCTTTCGGAAGCGTAAGGAACCACGGCATAT 1322
| || | ||||||||||||| || |||||||||||||||||||||
Sbjct 1222 -----A--GATG---------TCCACTTCTCTTTTGGCAGCGTAAGGAACCACGGCATAA 1265
Query 1323 CTAAAGCCGGCGAAGGAATGAGATCGTCCAAGTTCTGTCTCAACATAGCCGGGGATACAC 1382
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1266 CTAAAGCCGGAGAAGGAATGAGATCGTCCAAGTTCTGCCTCAACATAGCCGGGGATACTC 1325
Query 1383 CATCCTCGAATCGCCTCTTCGACGCCATAGCTAGTCACTGTATACCCGTGATCATTAGCG 1442
| || |||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 1326 CGTCTTCGAATCGCCTCTTTGACGCCATAGCTAGTCACTGTATTCCTGTGATCATTAGCG 1385
Query 1443 ATGACATCGAGTTACCATATGAGGATGTCCTCAACTACAATGAGTTCTGTCTCTTTGTCA 1502
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1386 ATGACATCGAGTTACCATATGAGGATGTCCTCAACTACAACGAGTTCTGTCTCTTTGTCC 1445
Query 1503 GATCATCAGACGCTTTAAAGAAAGGGTTTCTGATGGGTCTTGTCAGGAGTATTGGCAGAG 1562
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 1446 GATCATCAGACGCTTTAAAGAAAGGGTTTCTGATGGGTCTTGTGAAGAGTATTGGGAGAG 1505
Query 1563 AAGAGTATAATAAGATGTGGCTTCGGTTGAAGGAAGTGGAGAGGTATTTCGATTTGCGTT 1622
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1506 AAGAGTATAATAAGATGTGGCTGCGGTTGAAAGAAGTGGAGAGGTATTTCGATTTGCGTT 1565
Query 1623 TTCCGGTG-AAGGATGACGAGGGAGATTATGCAGTTCAGATGATTTGGAAAGCTGTTGCC 1681
||||| | ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1566 TTCCG-TCCAAGGATGACGAAGGAGATTATGCAGTTCAGATGATTTGGGAAGCTGTTGCG 1624
Query 1682 AGGAAAGCTCCTTTGGTGAAGATGAAGGTTCACAGATTTCAGAGGTTTACAAGGCCTTTT 1741
|||||||||||||||||||||||||||||||| || ||||| |||| |||| |||||||
Sbjct 1625 AGGAAAGCTCCTTTGGTGAAGATGAAGGTTCATAGGTTTCAAAGGTACACAAAGCCTTTT 1684
Query 1742 TAGGG-TTTCTAATGATATTTTGGGAATTTGATTTAGATAGAAAGATAATGAATACAGTT 1800
||||| ||| || ||| |||||||||| || | ||| | | | |
Sbjct 1685 TAGGGGTTT-TAGTGACATTTTGGGAA----AT--A--TAG-----T--T---T----T- 1720
Query 1801 TCCAATGCAACCATGTGAATGTTTATTACAGTCAGCCATGTGAAGAAAGAGGTTACTTGA 1860
| ||| |||| |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1721 -C-AATTCAACTATGTGAATGTTTATTATAGTCAGCCATGTGAACAAAGAGGTTACTTGA 1778
Query 1861 TCTAGACGATGCACAATGGTTACGTGTGATATAAGTTACTTCTTTATTT 1909
||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1779 TCTAGACGATGCACAATGGTTACGTGTGACATAAGTTACTTCTTCATTT 1827
Score = 124 bits (67), Expect = 2e-27
Identities = 83/90 (92%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 1 CTTCGGCGTTTTCATCGTTTCTCATCTACCTCGAAA-TTTTCTCGTCACTCTAATCAAAA 59
|||||||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||
Sbjct 1 CTTCGGCGTTTTCATCGTTTCTCATCTACCTC-AAACTTTTCTTATCACTCTAAT-AAAA 58
Query 60 ATCTCACTTCGTTATTTTCTCGGGAAAAAT 89
|||||||||||||| |||||||| ||||||
Sbjct 59 ATCTCACTTCGTTAATTTCTCGG-AAAAAT 87
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71723931335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5