BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03660.2
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477611 jgi|Araly1|477611|fgenesh2_kg.3__312__AT3G03660.1 684 0.0
> Ahg477611 jgi|Araly1|477611|fgenesh2_kg.3__312__AT3G03660.1
Length=813
Score = 684 bits (370), Expect = 0.0
Identities = 406/424 (96%), Gaps = 0/424 (0%)
Strand=Plus/Plus
Query 1 ATGGACCAAGAACAAACACCACATAGCCCAACCCGCCATAGTCGCTCACCCCCATCCTCC 60
||||||||||||||||| ||||| ||||||||| |||||||||| |||||| |||||||
Sbjct 1 ATGGACCAAGAACAAACCCCACAGAGCCCAACCGGCCATAGTCGTTCACCCTCATCCTCG 60
Query 61 GCCTCCGGTTCCACCTCAGCAGAACCGGTTCGGTCCCGATGGTCACCTAAACCGGAACAA 120
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 GCCTCCGGTTCCACCTCAGCAGAACCGGTTCGATCGCGATGGTCACCTAAACCGGAACAA 120
Query 121 ATACTCATACTTGAGTCGATCTTCCACAGTGGTATGGTTAACCCTCCCAAAGAAGAGACG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATACTCATACTTGAGTCGATCTTCCACAGTGGTATGGTTAACCCTCCCAAAGAAGAGACG 180
Query 181 GTAAGGATAAGAAAGATGCTCGAGAAATTTGGCGCGGTGGGAGATGCAAATGTCTTCTAT 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTAAGAATAAGAAAGATGCTCGAGAAATTTGGCGCGGTGGGAGATGCAAATGTCTTTTAT 240
Query 241 TGGTTTCAAAACCGGCGGTCAAGGTCCCGTCGGAGACAGCGACAGCTACAGGCTGCAGCT 300
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 241 TGGTTTCAAAACCGGCGGTCAAGATCCCGTCGGAGACAGCGACAGCTCCAGGCCGCAGCT 300
Query 301 GCAGCAGCGGACGCAACCACCAACACTTGTGACCAGACTATGATGGTGAGCAACAGCTTA 360
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GCAGCCGCGGCCGCAACCACCAACACTTGTGACCAGACCATGATGGTGAGCAACAGCTTA 360
Query 361 CCACATCATAGTGGGAGTGATTTGGGGTTTGGAGGTTGTAGCACTTCTTCTAATTACTTA 420
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 361 CCACATCATAGTGGGAGTGATTTGGGGTTGGGAGGGTGTAGCACTTCTTCTAATTACTTA 420
Query 421 TTTG 424
||||
Sbjct 421 TTTG 424
Score = 660 bits (357), Expect = 0.0
Identities = 379/390 (97%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 511 gctagctcttcttcttcttATGGTGGTGGATGTGATAATCAAAGCAATAGTGGCATGGAG 570
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GCTAGCTCTTCCTCTTCTTATGGTGGTGGATGTGATAATCAAAGCAATAGTGGCATGGAG 483
Query 571 AATCTCTTAACAATGTCTGGCCAAATGAGTTACCATGAAGCTACTCATCATCATTATCAA 630
||||||||||||||||| |||||||||||||| ||||||| || |||||||||||| |||
Sbjct 484 AATCTCTTAACAATGTCAGGCCAAATGAGTTATCATGAAGTTAATCATCATCATTACCAA 543
Query 631 AATCATAGCTCAAATGTCACATCGATTTTGTGCCCATCTGATCAAAACTCCAATTTTCAA 690
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AATCATAGCTCAAATGTCGCATCGATTTTGTGCCCATCTGATCAAAACTCCAATTTTCAC 603
Query 691 TACCAACAAGGGGCTATAACGGTGTTTATAAACGGAGTTCCGACAGAAGTGACGAGAGGA 750
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 604 TACCAACAAGGGGCTATAACGGTGTTTATCAACGGAGTTCCGACAGAAGTGACGAGAGGA 663
Query 751 GGAATAGACATGAAAGCAACGTTTGGAGAAGATTTGGTTTTGGTGCATTCCTCAGGTGTT 810
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GGAATAGACATAAAAGCAACGTTTGGAGAAGATTTGGTTTTGGTGCATTCCTCAGGTGTT 723
Query 811 CCTCTTCCTACTGATGAGTTTGGTTTTTTGATGCATAGCTTACAACATGGTGAAGCTTAT 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 CCTCTTCCTACTGATGAGTTTGGTTTTTTGATGCATAGCTTACAACATGGTGAAGCTTAT 783
Query 871 TTCCTGGTTCCAAGACAGACATGAACTGGC 900
||||||||||||||||||| ||||||||||
Sbjct 784 TTCCTGGTTCCAAGACAGATATGAACTGGC 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5