BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03670.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477612 jgi|Araly1|477612|fgenesh2_kg.3__313__AT3G03670.1 1585 0.0
> Ahg477612 jgi|Araly1|477612|fgenesh2_kg.3__313__AT3G03670.1
Length=1147
Score = 1585 bits (858), Expect = 0.0
Identities = 1047/1136 (92%), Gaps = 21/1136 (2%)
Strand=Plus/Plus
Query 44 CACTTTCTACAAAAACAAGATGAAGATTGCAACGTTTTCTGTTCTACTCTTGCTTTTATT 103
|||| | ||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 21 CACTAT-TACAAAAACAAGATGAAGATTGCAAAGTTTTCTGTTCTACTCTTGATTTTATT 79
Query 104 TATTTTCCCCGTGGCATTAGCGCAGCTGAAATTTAAGTTTTACAGTGAATCGTGCCCTAA 163
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |
Sbjct 80 TATTTTCCCCGTGGCATTAGCGCAGCTAAAATTCGGGTTTTACAAAGAATCGTGCCCTGA 139
Query 164 TGCAGAGACTATCGTAGAAAACCTGGTTCGCCAGCAG-TTTGCTCGTGACCCTTCAATCA 222
||||||||| |||||| |||||||||| ||||||| | |||| | |||| ||| ||||||
Sbjct 140 TGCAGAGACAATCGTACAAAACCTGGTCCGCCAGC-GTTTTGGTAGTGATCCTACAATCA 198
Query 223 CGGCCGCCTTGACTCGTATGCATTTTCACGACTGTTTTGTCCAGGGCTGCGACGCTTCTC 282
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 199 CTGCCGCCTTGACTCGGATGCATTTTCATGACTGTTTTGTCCAGGGCTGCGACGCTTCTC 258
Query 283 TCCTCATAGACCCAACGACGTCTCAACT-ATCGGaaaaaaaCGCCGGCCCAAACTTTAGC 341
|||||||||||| ||||||||||||| | ||||||||||| ||||||||||||| ||||
Sbjct 259 TCCTCATAGACCAAACGACGTCTCAA-TCATCGGAAAAAACCGCCGGCCCAAACGGTAGC 317
Query 342 GTGAGAGGGTTCGAGCTGATCGACGAGATCAAGACGGCACTCGAAGCTCAATGTCCCTCT 401
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GTGAGAGGGTTCGAGCTGATCGACGAGATCAAGACGGCACTCGAAGCTCAATGTCCCTCC 377
Query 402 ACGGTCTCGTGCTCCGATATAGTCACGCTCGCCACACGTGACGCCGTGTTCTTAGGTGGA 461
| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 378 AAGGTCTCGTGCTCCGACATAGTCACGCTCGCCACACGTGACTCCGTGTTCTTAGGCGGA 437
Query 462 GGACC-AAGCTACGTGGTCCCCACCGGACGTCGCGATGGCTTTGTGTCGAATCCTGAAGA 520
|| || || |||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 438 GGGCCTAA-CTACACGGTCCCCACCGGACGTCGTGATGGCTTTGTGTCGAACCCTGAAGA 496
Query 521 CGCCAATGA-GATCCTCCCTCCACCATTCATATCCGTCGAAGG-CATGTTAAGTTTTTTC 578
||||||| | ||||||||||||||||||||| ||||||||||| | |||||||||| |||
Sbjct 497 CGCCAAT-AGGATCCTCCCTCCACCATTCATCTCCGTCGAAGGTC-TGTTAAGTTTCTTC 554
Query 579 GGCAACAAAGGAATGAATGTTTTTGATTCCGTAGCTCTTTTGGGGGCGCACACGGTTGGG 638
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 555 GGCAACAAAGGAATGAATGTTTTTGATGCCGTAGCTCTTTTGGGGGCGCACACGGTTGGG 614
Query 639 ATCGCGTCTTGTGGTAATTTTGTGGACCGGGTCACGAACTTTCAAGGAACCGGACTGCCC 698
|||| ||||||||||||||| | ||||||| ||| |||||||||||||||||||| |||
Sbjct 615 GTCGCTTCTTGTGGTAATTTTATTGACCGGGCCACCAACTTTCAAGGAACCGGACTACCC 674
Query 699 GACCCATCCATGGACCCCACTTTGGCTGGCAGGCTAAGGAACACATGTGCGGTTCCAGGC 758
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 675 GACCCATCCATGGACCCCTTTTTGGCTGGCAGGCTAAGGGACACATGTGCGGTTCCAGGC 734
Query 759 GGCTTCGCGGCACTGGACCAGTCGATGCCAGTAACGCCGGTCTCATTCGACAACTTGTTC 818
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 735 GGCTTCGCGGCACTGGACCAGTCGATGCCAGTAAGGCCGGTCTCATTCGACAACTTGTTC 794
Query 819 TTTGGTCAGATCAGAGAGAGGAAAGGAATTTTGCTT-ATTGACCAACTGATCGCAAGCGA 877
||||||||||||||||||||||||||||||||| || ||||||||||| ||||| | |||
Sbjct 795 TTTGGTCAGATCAGAGAGAGGAAAGGAATTTTG-TTAATTGACCAACTAATCGCGACCGA 853
Query 878 CCCGGCCACTTCTGGTGTTGTACTTCAGTACGCGTCCAACAACGAACTATTCAAACGTCA 937
||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 854 CCCGGCCACTTCTGGTGTTGTGTTTCAGTACGCGGCCAACAATGAACTATTCAAACGTCA 913
Query 938 GTTCGCAATCGCAATGGTGAAGATGGGAGCCGTTGACGTGCTTACCGGTTCAGCTGGTGA 997
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 914 GTTCGCAATCGCGATGGTGAAGATGGGAGCCCTTGACGTGCTTACCGGTTCAGCTGGTGA 973
Query 998 GATCAGGACGAATTGTAGAGCATTCAACTAAAGCTTTATAACAAGTTTCTATATCTGATT 1057
|||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||
Sbjct 974 GATCAGGACGAATTGTAGAGCATTCAACTAAAGCTTGATAACCTGTTTCTAAACCTGATT 1033
Query 1058 ATTGATTGTTTTTCCCTTAATTTCCGCTTCTGATGATGAATTGTGAATGGTGATTGTTTG 1117
||||||| |||||| || |||| |||| ||||||||||||||||||||||||||||||
Sbjct 1034 ATTGATT-TTTTTCTTTTCTTTTC-GCTTATGATGATGAATTGTGAATGGTGATTGTTTG 1091
Query 1118 CCTATATA-T-----GTATGTACGTATATCTTTAAAATAAGGTTTGGTGAATCGAT 1167
|||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1092 CCTATATAATTATATGTATGTACGTATATCTTTAAAATAATGTTTGGTGAATCGAT 1147
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 8 ACCTTTCTACAAGAACATAGCACTATTACA 37
||||||||||||||||||||||||||||||
Sbjct 1 ACCTTTCTACAAGAACATAGCACTATTACA 30
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5