BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03680.1
Length=3308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477613 jgi|Araly1|477613|fgenesh2_kg.3__314__AT3G03680.1 5009 0.0
Ahg476609 jgi|Araly1|476609|fgenesh2_kg.2__1739__AT1G74720.1 95.3 3e-18
> Ahg477613 jgi|Araly1|477613|fgenesh2_kg.3__314__AT3G03680.1
Length=3174
Score = 5009 bits (2712), Expect = 0.0
Identities = 3034/3188 (95%), Gaps = 27/3188 (1%)
Strand=Plus/Plus
Query 8 AAAATTCAAACTTTATTTCTCTCTCTCTATCTTTCAAAAGAAACTGAACAGTCTCATTCA 67
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AAAATTCAAACTTTATTTCTCTCTCTC--TCTTTCAAAAGAAACTGAACAGTCTCATTCA 58
Query 68 TCTTCTTCAATCGTAAG-AAAAATCTGATCAGCTTCAATTATCTCCGAGAAGGAAACAAT 126
||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||
Sbjct 59 TCTTCTTCAATCGCAAGAAAAAATCTGATCAGCTTCAATTTTCTCCGAGACGGAAACAAT 118
Query 127 GGCAGACAATGTTCTGAGGAAGCTGATTGTTGAGATCTGTAGCGCAAGAAATCTGATGCC 186
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GGCGGACATTGTTCTGAGGAAGCTGATTGTTGAGATCTGTAGCGCAAGAAATCTGATGCC 178
Query 187 TAAGGATGGTCAAGGCACCGCGAGCGCTTACGCAATCGTGGATTTCGACGGCCAACGGCG 246
|||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 179 TAAGGATGGTCAAGGCACGGCGAGCGCTTACGCAATTGTAGATTTTGACGGCCAACGGCG 238
Query 247 ACGGACGAAGACGAAATTCCGAGATCTGAATCCACAGTGGGACGAGAAGCTCGAGTTCTT 306
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 ACGGACGAAGACGAAATTCCGAGATCTGAATCCACAATGGGACGAGAAGCTCGAGTTCTT 298
Query 307 TGTGCACGACGTGGCGACTATGGGGGAAGAGATTCTTGAGATCAATCTTTGCAACGATAA 366
|| |||||| | ||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 299 CGTCCACGACACGTCGACTATGGGGGAGGAGATTCTTGAGATCAATCTTTGCAACGACAA 358
Query 367 GAAGACGGGAAAACGGAGCACGTTTCTCGGGAAAGTTAAGATCGCCGGAAGTGCGTTTGC 426
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 359 GAAGACGGGAAAACGGAGCACGTTTCTCGGGAAGGTTAAGATCGCCGGAAGTTCGTTTGC 418
Query 427 GTCGGCTGGATCTGAAACTCTTGTTTATTATCCGCTTGAGAAGAGGAGCGTTTTCTCTCA 486
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 419 GGCGGCTGGATCTGAAACTCTTGTTTACTATCCGCTTGAGAAGAGGAGCGTTTTCTCTCA 478
Query 487 GATCAAAGGTGAGATTGGATTAAAGGCTTATTACGTCGATGAGAATCCCCCGGCGGCGCC 546
|||||||||||||||||||||||| || || ||||||||||||||| | | ||
Sbjct 479 GATCAAAGGTGAGATTGGATTAAAAGCGTACTACGTCGATGAGAAT-------C--CACC 529
Query 547 TGCTGCGACGGAGCCGAAACCTGAGGCTGCAGCTGCGACGGAAGAGAAGCCGCCGGAGAT 606
| |||||||||| |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 530 -G--GCGACGGAGCAGAAACCTGAGGCTGCAGCTGCGACGGTAGAGAAGGCGCCGGAGAA 586
Query 607 TGCAAAAGCagaggatgggaagaaagaaacagaggcggcgaaaacagaggagaagaagga 666
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TCCAAAAGCAGAGGAGGGGAAGAAAGAAACAGAGGCGGCGAAAACAGAGGAGAAGAAGGA 646
Query 667 aggagataaaaaagaagaggagaaaccgaaggaagaagctaaaccggacgagaaaaaaCC 726
||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 647 AGGAGATAAAAAAGAAGAGGAGAAACCTAAGAAAGAAGCTAAACCAGACGAGAAAAAACC 706
Query 727 CGAT---GCA---------CCACCGGATACGAAGGCAAAGAAGCCTGATACCGCCGTAGC 774
|||| ||| ||||||||||| |||||||||| ||||||| |||||| |||
Sbjct 707 CGATGCGGCAGCTCCTGCGCCACCGGATACTAAGGCAAAGACGCCTGATGCCGCCGCAGC 766
Query 775 TCCTCCTCCTCCTCCGGCTGAGGTTAAGAATCCGCCTATACCGCAGAAGGCAGAGACTGT 834
|||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 767 TCCTCCTCCTCCTCCGGCTGAGATTAAGAATCCGCCTTTACTGCAGAAGGCAGAGACTGT 826
Query 835 GAAGCAGAATGAATTAGGAATTAAACCGGAGAACGTAAACCGGCAAGATCTAATCGGGTC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GAAGCAGAATGAATTAGGAATTAAACCGGAGAACGTAAACCGGCAAGATCTAATCGGGTC 886
Query 895 TGATCTCGAGCTTCCTTCACTAACCAGAGATCAGAATCGTGGTGGTGGTTACGATCTCGT 954
|||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 887 CGATCTCCAGCTTCCTTCACTAACCAGAGATCAGAACCGTGGTGGTGGCTACGATCTCGT 946
Query 955 CGATCGAATGCCGTTTCTATACATTCGTGTAGCTAAAGCGAAGCGAGCGAAGAACGATGG 1014
||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct 947 CGATCGAATGCCGTTTCTATATATCCGTGTTGCTAAAGCGAAGCGAGCAAAGAACGATGG 1006
Query 1015 AAGCAATCCGGTTTACGCGAAGCTCGTGATCGGAACAAATGGCGTGAAAACCAGAAGCCA 1074
||| |||||| |||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1007 AAGTAATCCGATTTATGCAAAGCTCGTGATCGGAACAAATGGTGTGAAAACCAGAAGCCA 1066
Query 1075 AACCGGTAAAGATTGGGATCAAGTGTTTGCTTTTGAGAAAGAGAGCTTAAACTCGACCTC 1134
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 1067 AACCGGTAAAGATTGGGATCAAGTGTTTGCTTTCGAGAAAGAGAGCTTAAACTCAAGCTC 1126
Query 1135 GCTTGAAGTTTCCGTTTGGAGTGAAGAGAAGATTGAGAAGGAAGATAAAACAACGACGAC 1194
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1127 ACTTGAAGTTTCCGTTTGGAGTGAAGAGAAGATTGAGAAGGAAGATAAAACGACGACGAC 1186
Query 1195 TACTGAGAGTTGTTTAGGAACGGTGTCGTTTGATCTTCAAGAGGTTCCTAAGAGAGTGCC 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 TACTGAGAGTTGTTTAGGAACGGTGTCGTTTGATCTTCAAGAGGTTCCTAAGAGAGTGCC 1246
Query 1255 TCCGGATAGTCCTTTGGCTCCTCAATGGTACACATTGGAATCTGAGAAATCACCGGGGAA 1314
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1247 TCCGGATAGTCCTTTAGCTCCTCAATGGTACACATTGGAATCTGAGAAATCGCCGGGGAA 1306
Query 1315 TGACGTCATGCTCGCTGTTTGGCTCGGGACTCAAGCTGATGAAGCGTTTCAAGAAGCTTG 1374
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1307 TGACGTCATGCTCGCTGTTTGGCTCGGAACTCAAGCTGATGAAGCGTTTCAAGAAGCTTG 1366
Query 1375 GCAATCTGATTCCGGTGGGTTGATTCCGGAGACGAGATCCAAAGTTTACTTATCTCCGAA 1434
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 GCAATCTGATTCTGGTGGATTGATTCCGGAGACGAGATCCAAAGTTTACTTATCTCCGAA 1426
Query 1435 GCTTTGGTATTTGCGTCTAACGGTCATACAAACCCAAGATTTGCAGCTAGGTTTGGGATC 1494
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1427 GCTTTGGTATTTGCGTCTAACGGTAATACAAACCCAAGATTTGCAGCTAGGTTTGGGATC 1486
Query 1495 CGAAGCTAAGTCAAAGATCCCCACCACTGAGCTTTATGTGAAAGCTCAGCTTGGACCTCA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 CGAAGCTAAGTCAAAGATCCCCACCACTGAGCTTTATGTGAAAGCTCAGCTTGGACCTCA 1546
Query 1555 AGTTTTCAAAACGGCTAGGACTTCGATTGGGCCGTCGGCTTCTTCGTCCGGATCCGGTAA 1614
||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 1547 AGTCTTCAAAACGGCTAGGACTTCGATTGGGCCGTCGACTTCTTCGTCAGGATCAGGTAA 1606
Query 1615 CCCGACTTGGAACGAGGATCTAGTTTTCGTAGCTTCCGAGCCGTTTGAGCCGTTCTTGAT 1674
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1607 CCCGACTTGGAATGAGGATCTTGTTTTTGTAGCTTCCGAGCCGTTTGAGCCGTTCTTGAT 1666
Query 1675 AGTGACTGTGGAAGATATAACCAACGGGCAATCAATTGGTCAGACTAAGATACATATGGG 1734
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1667 AGTGACTGTGGAAGATATAACAAACGGGCAATCAATTGGTCAGACCAAGATACATATGGG 1726
Query 1735 AAGTGTTGAGAGGAGAAATGATGACCGGACTGAACCGAAATCGAGGTGGTTTAATCTCGC 1794
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 AAGTGTGGAGAGGAGAAATGATGACCGGACTGAACCGAAATCGAGGTGGTTTAATCTCGT 1786
Query 1795 CGGCGATGAGAAGAAACCGTACTCCGGGAGAATCCACGTGAAAGTTTGTCTTGAAGGTGG 1854
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1787 CGGCGATGAGAATAAACCGTACTCAGGGAGAATCCACGTGAAAGTTTGTCTTGAAGGTGG 1846
Query 1855 GTATCACGTGCTAGACGAAGCAGCTCACGTGACGAGTGATGTCAGACCCTCTGCTAAACA 1914
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1847 GTATCACGTGCTAGACGAAGCAGCTCACGTGACCAGCGATGTCAGACCCTCGGCTAAACA 1906
Query 1915 GTTAGCCAAGCCACCTATTGGTTTATTGGAAGTGGGTATCCGTGGAGCTACTAATTTACT 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 GTTAGCCAAGCCACCTATTGGTTTATTGGAAGTGGGTATCCGTGGAGCTACTAATTTACT 1966
Query 1975 TCCTGTGAAAACCAGAGACGGTACACGTGGCACCACCGATGCTTATGTGGTTGCTAAATA 2034
||| |||||||| ||||| |||||||| |||||||||||||| || ||||||||||||||
Sbjct 1967 TCCGGTGAAAACTAGAGATGGTACACGAGGCACCACCGATGCATACGTGGTTGCTAAATA 2026
Query 2035 TGGACCGAAATGGATTCGGACTCGTACGATCCTAGACAGGTTTAATCCGCGGTGGAACGA 2094
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 2027 TGGACCGAAATGGATTCGGACCCGTACGATCCTAGACCGGTTTAATCCGCGGTGGAACGA 2086
Query 2095 GCAGTACACATGGGATGTTTATGATCCGTGCACGGTCCTTACTATTGGAGTTTTCGACAA 2154
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2087 GCAGTATACATGGGATGTTTATGATCCGTGCACGGTCCTTACGATTGGAGTTTTCGACAA 2146
Query 2155 TGGAAGATACAAACGGGACGAATCCGGAAAGCAAGGGAGAGATGTTAGGGTCGGGAAAAT 2214
||| | ||||| |||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 2147 CGGACGGTACAAGCGGGACGAATCCGGGAAGCAAGGGAGAGACGTAAGGGTCGGGAAAAT 2206
Query 2215 CCGTGTACGTCTCTCGACACTCGACATGAACCGCATATACCTTAATTCCTACACCTTAAC 2274
||||||||| |||||||| |||||||||||||| || ||||| |||||||||||| ||||
Sbjct 2207 CCGTGTACGCCTCTCGACTCTCGACATGAACCGAATCTACCTAAATTCCTACACCATAAC 2266
Query 2275 CGTGATCTTACCAAGCGGAGCCAAGAAAATGGGAGAAGTTGAAATCGCGGTTCGATTCTC 2334
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2267 CGTGATCTTACCAAGCGGAGCCAAGAAAATGGGAGAAGTTGAAATTGCGGTTCGATTCTC 2326
Query 2335 TTGTCCATCTTGGCTAAGCATTATTCAAGCCTATGTCACACCAATGCTACCTAGGATGCA 2394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 TTGTCCATCTTGGCTAAGCATTATTCAAGCCTATGTCACACCAATGCTACCTAGGATGCA 2386
Query 2395 CTATGTCCGTCCGCTTGGTCCAGCTCAACAAGACATTTTGCGTCACACGGCTATGCGTAT 2454
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2387 CTACGTCCGTCCGCTTGGTCCAGCTCAACAAGATATTTTGCGTCACACGGCTATGCGTAT 2446
Query 2455 CGTGACAGCCCGGCTTGCGCGGTCTGAGCCTCCATTAGGTCAAGAGGTGGTTCAGTACAT 2514
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2447 TGTGACAGCCCGGCTTGCGCGGTCTGAGCCTCCATTAGGTCAAGAGGTGGTTCAATACAT 2506
Query 2515 GCTAGACACAGACAATCATGTGTGGAGCATGAGGAGAAGCAAAGCTAATTGGTTCCGTGT 2574
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2507 GCTAGACACGGACAATCATGTGTGGAGCATGAGGAGAAGCAAAGCTAATTGGTTCCGTGT 2566
Query 2575 CATCACGTTCTTGTCACGGGCCGCAACTATAGCCCGTTGGATTCACGGGATTCGAACTTG 2634
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 2567 TATCACGTTCTTGTCACGTGCCGCTACTATAGCCCGTTGGGTTCACGGAATTCGAACTTG 2626
Query 2635 GGTTCACCCACCAACAACCGTTCTCGTTCACTTGCTTCTCGTGGCCATCGTCTTGTGTCC 2694
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2627 GGTTCACCCACCAACAACCGTTCTAGTTCACTTGCTTCTCGTGGCCATCGTCTTGTGTCC 2686
Query 2695 ACATTTAGTCCTCCCAACCGTATTCATGTACGCGTTCTTGATCTTAGCCTTACGATTCCG 2754
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 2687 ACATTTAGTCCTCCCAACCGTTTTCATGTACGCGTTCTTGATCTTAGCCTTAAGATTCCG 2746
Query 2755 TTACCGTGGCAGAGTCAAAGTCAACAGCGTTGACCCACGACTATCTTGCGTTGACTCCGT 2814
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2747 TTCCCGTGGCAGAGTCAAAGTCAACAGCGTTGACCCACGACTATCTTGCGTTGACTCCGT 2806
Query 2815 TGCTCCCGACGAGCTTGATGAAGAGTTTGATGGTTTCCCAACAACGAGACAACCGGAGGT 2874
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2807 TGCTCCCGACGAGCTTGATGAAGAGTTTGATGGTTTCCCAACAACGAGACCACCGGAGGT 2866
Query 2875 CGTACGTATAAGGTATGACCGGTTAAGGGCATTGGCCGGTCGGGCACAGACTTTATTAGG 2934
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2867 CGTTCGTATAAGGTATGACCGGTTAAGGGCATTGGCCGGTCGGGCACAGACTTTATTAGG 2926
Query 2935 TGACGTGGCGGCTCAAGGGGAGCGTGTTGAGGCGTTGTTCAACTGGAGAGACCCACGCGC 2994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2927 TGACGTGGCGGCTCAAGGGGAGCGTGTTGAGGCGTTGTTCAACTGGAGAGACCCACGCGC 2986
Query 2995 CACGTGTATATTCGTAGTGTTCTGTCTTTTCGCGTCGTTTTTGTTCTACATCGTTCCGTT 3054
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2987 CACGTGTATATTCGTGGTGTTCTGTCTTTTCGCGTCGTTTTTGTTCTACATCGTTCCGTT 3046
Query 3055 TAAAGTTTTCCTTTTGGGATCTGGTTTTTACTACATTCGACATCCGAGGTTTAGAGACGA 3114
|||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 3047 TAAAGTTTTCGTTTTGGGGTCAGGTTTTTACTACATTCGACATCCGAGGTTTAGAGACGA 3106
Query 3115 TATGCCTTCCGTTCCGGTCAACTTTTTCCGGCGACTTCCTTCAATGTCGGACCAGATTCT 3174
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3107 TATGCCTTCCGTTCCGGTCAACTTTTTCCGGCGACTTCCTTCAATGTCAGATCAGATTCT 3166
Query 3175 GTGATTCG 3182
||||||||
Sbjct 3167 GTGATTCG 3174
> Ahg476609 jgi|Araly1|476609|fgenesh2_kg.2__1739__AT1G74720.1
Length=3455
Score = 95.3 bits (51), Expect = 3e-18
Identities = 127/162 (78%), Gaps = 11/162 (7%)
Strand=Plus/Plus
Query 2007 CCACCGATGCTTA-TGTGGTTGCTAAATATGG-ACCGAAATGGATTC-GGACTCGTACGA 2063
|||| |||||||| |||| ||||||| || || | ||||||| | | ||||||| || |
Sbjct 2075 CCACTGATGCTTACTGTG-TTGCTAAGTACGGCAA-GAAATGGGT-CAGGACTCGAACTA 2131
Query 2064 TC-CTAGACAGGTTTA-ATCCGCGGTGGAACGAGCAGTACACATGGGATGTTTATGATCC 2121
| | |||||| ||| | ||| ||||| |||||||||| || ||| | |||||||||||
Sbjct 2132 TAAC-AGACAG-TTTCGACCCGAGGTGGCACGAGCAGTATACGTGGCAGGTTTATGATCC 2189
Query 2122 GTGCACGGTCCTTACTATTGGAGTTTTCGACAAT-GGAAGAT 2162
||||| || || || ||||||| ||||||||| ||| |||
Sbjct 2190 TTGCACCGTGCTAACCGTTGGAGTCTTCGACAATTGGAGGAT 2231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124866897013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5