BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03690.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317250 jgi|Araly1|317250|fgenesh1_pm.C_scaffold_3000266 1812 0.0
> Ahg317250 jgi|Araly1|317250|fgenesh1_pm.C_scaffold_3000266
Length=1137
Score = 1812 bits (981), Expect = 0.0
Identities = 1088/1140 (95%), Gaps = 6/1140 (1%)
Strand=Plus/Plus
Query 35 ATGGCGATAAAGAAACTGTTGATGAtctccttctctcttacttcactcctcttctctctt 94
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTATAAAGAAACTGTTGATGATCTCCTTCTCTCTTACTTCACTCCTCTTCTCTCTT 60
Query 95 ctctACATCATCCCCACGACCAAGACTCTATTCACTTCCTCAAAAATCCCTTCTTTACCC 154
||||||||||||||||| || || ||| |||||||| |||||||||||||| |||||||
Sbjct 61 CTCTACATCATCCCCACAACTAAAACTTTATTCACTCCCTCAAAAATCCCTACTTTACCA 120
Query 155 CTCGAATCCAACCAAAACTC-CAACTCTACCCTCCCCTGTTTTGCTTACCTAATCTCTGC 213
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CTCGAATCCAACCAAAAC-CACAACTCTACCCTCCCCTGTTTCGCTTACCTAATCTCTGC 179
Query 214 ATCCAAAGGCGACGCCGGAAAACTCAAACGCCTCCTCCGATCTCTCTACCACCGTAGAAA 273
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 ATCCAAAGGCGACGCCGGAAAACTCAAACGCCTCCTCCGATCTCTCTACCACCGCAGAAA 239
Query 274 CCATTATTTGATCCATCTAGACTTGGAGGCACCCGAGGAAGAGCATTTGGAGAT-GATAC 332
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 240 CCACTATTTGATCCATCTAGACTTGGAGGCGCCCGAGGAAGAGCATTTGGAGATGGCCA- 298
Query 333 GGTTCGTAGCCGGAGAGCCTCTGTTTCAGCCGGAAGGTAATGTAATGATCGTTGGAAAAC 392
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 299 GGTTTGTAGCCGGAGAACCTCTGTTTCAGCCGGAGGGTAATGTAATGATCGTCGGAAAAC 358
Query 393 CGAATCTGGTGACTTACAGAGGACCAACGATGCTTGCGACGACGTTACACGCAATGGCTT 452
||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 359 CGAATCTGGTGACATATAGAGGACCAACGATGCTTGCGACGACGCTACACGCAATGGCTT 418
Query 453 TGCTCTTGAGATGTTGTCGGTGGGATTGGTTCATTAATCTTAGTGCTTCTGATTATCCTC 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGCTCTTGAGATGTTGTCGGTGGGATTGGTTCATTAATCTTAGTGCTTCTGATTATCCTC 478
Query 513 TCGTCACACAAGACGATCTGATCTATGCATTTTCTGAGTTGCCTAGAGATCTCAACTTCA 572
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCCTCACACAAGACGATCTGATCTATGCATTTTCTGAGTTGCCTAGAGATCTCAACTTCA 538
Query 573 TACAGCACACGAGCCGATTAGGATGGAAAATGAACAAAAGAGGGAAACCAATAATAATAG 632
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TACAGCACACAAGCCGATTAGGATGGAAAATGAACAAAAGAGGGAAACCAATAATAATAG 598
Query 633 ATCCAGGGCTTTATAGCCTCAACAAATCAGAGATTTGGTGGGTTAGTAATCAGCGAAGCC 692
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATCCAGGACTATATAGCCTCAACAAATCAGAGATTTGGTGGGTTAGTAATCAGCGAAGCC 658
Query 693 TCCCTACTTCTTTCAAGCTCTTCACAGGTTCTGCTTGGACATTCCTATCAAGACCGTTCG 752
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 659 TCCCTACTTCTTTCAAGCTCTTCACAGGTTCTGCTTGGACATTCCTATCGAGACCGTTCT 718
Query 753 CAGAATATTGTATAATAGGTTATGACAACTTACCAAGAACACTGCTTCTCTACTACACAA 812
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 719 CAGAATATTGTATAATAGGTTATGATAACTTACCAAGAACACTCCTTCTCTACTACACAA 778
Query 813 ACTTCGTTTCATCCCCGGAAGGCTATTTTCAGACGCTTATATGCAACTCGGATGAGTTCA 872
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 ACTTTGTTTCATCCCCGGAAGGCTATTTTCAGACACTTATATGCAACTCGGATGAGTTCA 838
Query 873 AGAACACGACCGTGAACCACGACCTCCATTACATCGCGTGGGACAATCCGCCAAAGCAGC 932
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 AGAGCACGACCGTGAACCACGACCTCCACTACATCGCGTGGGACAATCCGCCAAAGCAGC 898
Query 933 ACCCCAAGATATTAGGGACAAGGGATTACAGAAAGATGGTAATGAGCAACCGACCATTCG 992
|||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 899 ACCCAAAGATTTTAGGGACCAGGGATTACAGAAAGATGGTAACGAGCAACCGACCATTCG 958
Query 993 CTAGGAAGTTCAAGAGCAATGACCCCGTTCTCAATAGGATAGACCGGGAGATTCTGAGAA 1052
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 CAAGGAAGTTCAAGAGCAATGACCCCGTCCTCAATAGGATAGACCGGGAGATTCTGAGAA 1018
Query 1053 GGAA-ACGGAAACTTGGGTCGAAACCCGATCTTGGTCCTGGTCCGGGGGCTAGAAGATTG 1111
| || |||||||| |||||||||||| ||||| |||||||||||||||||||| || ||
Sbjct 1019 G-AACACGGAAACGTGGGTCGAAACCAGATCTCGGTCCTGGTCCGGGGGCTAGGAGGTTA 1077
Query 1112 AAGAGTTTACTAATGAGGCTTTTGTTGAGAAGAAACTTTGTCAATAGACAATGTAGATAG 1171
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1078 AAGAGTTTACTAATGAGGCTTTTGTTGAGAAGAAACTTTGTCAATAGGCAATGTAGATAG 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5