BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03700.1
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927897 jgi|Araly1|927897|scaffold_300354.1 2230 0.0
> Ahg927897 jgi|Araly1|927897|scaffold_300354.1
Length=1489
Score = 2230 bits (1207), Expect = 0.0
Identities = 1392/1483 (94%), Gaps = 6/1483 (0%)
Strand=Plus/Plus
Query 50 TGGC-AAATACAACGCATCTATGCCTACACCAACAAGCAACGGTCATGCCTCTCGCGTGC 108
|||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1 TGGCAAAATACAACGCATCTATGCCTATACCAACAAGCAACGGCCATGCCTCTCGCGTGC 60
Query 109 AGATTCAAGAACCAAGAATAATGTCTCCTCTTCCTCCTTCTTCTTCTCCAATCGCCTTCA 168
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATTCAAGAATCGAGAACAATGTCTCCTCTTCCTCCTTCTTCTTCTCCAATCGCCTTCA 120
Query 169 AGGAACAACAAGGTAGACCACCTCCAACAACACAACAAACCA-TAGCAGGAAAACTCTTT 227
|||||||||| || ||||||||||| ||||||||||||| || |||| |||||| |||||
Sbjct 121 AGGAACAACAGGGAAGACCACCTCCCACAACACAACAAA-CATTAGCCGGAAAATTCTTT 179
Query 228 AGAACTCTTTTCAAGGGTCTTCTCTTCTCACAACTAACCTTAATCTCACTTTTGGTGATC 287
|||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 180 AGAAATCTCTTCAAGGGTCTTCTCTTCTCACAATTAACCTTAATCTCGCTTTTGGTGATC 239
Query 288 GTTCTCACCATTCGCGGTCTCATCTCAGCAAGTACACACCATTTCCACCTCAAGAAATGG 347
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 GTTCTCACCATTCGCGGTCTCATCTCAGCAAGTACACACCATTTCCACCCCAAGAAATGG 299
Query 348 TACCCTCCTTTACTAGCATCTGTTGCTGTCTCAGGAATTGCATCTTTAGCATGGCAATGC 407
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 300 TACCCTCCTTTACTAGCATCTGTTGCTGTCTCAGGAGTTGCATCTTTAGCCTGGCAATGC 359
Query 408 ATCTTTATCTACAATCCATCAAGAGCAGTCAAAGCAACGTTCTGGCTTAGTCCAATACTC 467
|||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 360 ATCTTTATATACAATCCATCTAGAGCAGTCAAAGCAACTTTCTGGCTTAGCCCAATACTC 419
Query 468 ACCTGCTCGGTAGGAATCTTGCTTGTTTTGATTGGCTCAGCGGTAGATGCAGGTATAGGT 527
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 420 ACTTGCTCAGTAGGGATCTTGCTTGTTTTGATTGGCTCAGCGGTAGATGCAGGGATTGGT 479
Query 528 GCAGTGTTTGTCCTTTTCGCCATTACTCAGTCCCTCTATGGTTGCTGGATTACTCCGAGG 587
||||| ||||| |||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 480 GCAGTATTTGTGCTTTTCGCCATTACTCAGTCTCTGTATGGTTGCTGGATCACTCCGAGG 539
Query 588 CTTGAGTACACCGATAAAATATTATCACTTGCCACAGCATTTCCACCTGCAAGAACCAGA 647
|||| ||||||||||| || |||| ||||| |||||||||||||||||||||||||||
Sbjct 540 TTTGAATACACCGATAAGTTACTATCCCTTGCTACAGCATTTCCACCTGCAAGAACCAGA 599
Query 648 GAAGTAGTCTGCTTATCAATCATAGTCAGTGTCGTTTACTCTGGTTTCTTGGTGACTGGA 707
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 600 GAAGTAGTCTGTTTATCAATCATAGTTAGCGTCGTTTACTCTGGTTTCTTGGTGACTGGA 659
Query 708 ATTGGAGGAGCAACTTCCACTAGAACAAATCTTGATATCTTGTTCATATCCGTAATCATA 767
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 660 ATTGGAGGAGCAACTTCCACTAGAACAAATCTAGATCTCTTGTTCATATCCGTAATCATG 719
Query 768 ATAAGCTTAGCATGGACGATGCAAGTTATCAAGAATGTTCAACAAGTTGCGATTTCACGG 827
||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 720 ATAAGCTTAGCATGGACAATGCAAGTTCTCAAGAATGTACAACAAGTTGCGATTTCACGG 779
Query 828 GCGAGATATGTAAACTTTGCACATGGAGAAGATATGGACGCTTGGAATGCTTTCCGCATC 887
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 GCGAGATATGTAAACTTTGCACATGGAGAAGATATGGACGCTTGGAATGCTTTTCGCATC 839
Query 888 ACTATGAAACACTTGACTGGGAGCATCTGCGTTGGCTCGACGCTTGTTCCAATCATCGTA 947
||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 840 ACTTTGAAACACCTGACTGGGAGCATCTGCATTGGCTCGACGCTTGTTCCAATCATCGTG 899
Query 948 TTCATAAGAGGATCAATAAGAAGTGTTAATCTAATGTCAGGGAGCAGCGATGAGGTCATG 1007
||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 900 TTCATCAGAGGATCGATAAGAAGCGTTAATCTAATGTCAGGGAGCAGTGATGAGGTCATG 959
Query 1008 TATTCAGGTGCTGATTGCTTCTCTACCATTGCTAACAAACTCATTACACTTGGAAACAGA 1067
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATACCGGTGCTGATTGCTTCTCTACCATTGCTAACAAACTCATTACACTTGGAAACAGA 1019
Query 1068 TGGGGCTTTGTACATGTTGGAACCTATGATAAAGGATTCATGGAGGCTTCGAGTGATACC 1127
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1020 TGGGGCTTTGTACATGTTGGAACCTATGATAAAGGCTTTGTGGAGGCTTCGAGTGATACT 1079
Query 1128 TGGAAGAAGTTCAGAAGCACAACAGGGTTGGAGAAACTGATTGACTCGGATCTCACTAGC 1187
||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||
Sbjct 1080 TGGAAGAAGTTCAGAAGTACAACTGGATTAGAGAAACTGATTGACTCGGATCTCACTAGC 1139
Query 1188 TCCTTCTGTTTTCTCAGTGCTGTTTCTGTTGGAGCTGTCTCTTCATTAACTGCTGGGATA 1247
|||||||| || |||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1140 TCCTTCTGCTTCCTCAGTGCGGTTTCTGTTGGAGCGGTCTCTTCATTAACTGCTGGAATA 1199
Query 1248 TGGATGTTGTTAATACACAAGGACTATGCCCTGGAAGTGACTCTCTATGCTTTCATAATT 1307
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 TGGATGTTGTTAATACACAAGGACTATGCCCTGGAAGTGTCTCTCTATGCTTTCATAATT 1259
Query 1308 GGATATTTTGTGGGAAGGGTAGGTTTGGCGTGGCTACAGGCATGTGTATTGGCTTACTAT 1367
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1260 GGATATTTCGTGGGAAGGGTAGGTTTGGCGTGGCTACAGGCATGTGTCTTGGCTTACTAT 1319
Query 1368 GTAGCTTATTCTGAAGATCCTCAGAGCATGAGATTTGATGGAACAATTCCACAA-CGTAT 1426
||||||||||||||||||||||| |||||||| ||||| || ||||||||| || |||||
Sbjct 1320 GTAGCTTATTCTGAAGATCCTCAAAGCATGAGGTTTGACGGTACAATTCCA-AATCGTAT 1378
Query 1427 TCAGCGTCTTCAAATGTTAAGTGCTCACCGAGATAACAGGGAGCTTGAGGTGGGTAGAGA 1486
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1379 TCAACGTCTTCAAATGTTAAGTGCTCACAGAGATAACAGGGAGCTTGAGGTGGGTAGAGA 1438
Query 1487 CAGAGAAGAAGATAGTTATAACAATTGTTGAGTCATGAAGGAG 1529
|||||||||||||||||||| ||||||| || | ||| ||||
Sbjct 1439 GAGAGAAGAAGATAGTTATAATAATTGTTAAGCCTTGA-GGAG 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5