BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03740.1 Length=1627 Score E Sequences producing significant alignments: (Bits) Value Ahg927902 jgi|Araly1|927902|scaffold_300359.1 2207 0.0 Ahg952585 jgi|Araly1|952585|scaffold_91900001.1 640 0.0 Ahg936962 jgi|Araly1|936962|scaffold_501153.1 351 7e-96 > Ahg927902 jgi|Araly1|927902|scaffold_300359.1 Length=1354 Score = 2207 bits (1195), Expect = 0.0 Identities = 1308/1360 (96%), Gaps = 18/1360 (1%) Strand=Plus/Plus Query 71 CAACGACGAAA-TTTCGAAATGCCATCGCCACCGACGACGACTTCTCTCTCGGTGACACA 129 ||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 2 CAACGACGAAATTTTCGAAATGCCATCGCCACCGACGACGACTTCTCTCTCCGTCACACA 61 Query 130 GACCATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCTAAAGGAATCGG 189 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 62 AACCATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCCAAAGGAATCGG 121 Query 190 GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATCAATGGGCTATCTA 249 ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| Sbjct 122 GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAGGCTATCAATGGGCAATCTA 181 Query 250 TTTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGC 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 TTTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGC 241 Query 310 T-TTAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCTTTGCTTGATCAGA 368 | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 242 TCTT-GCTAGCGATGGTACCGATGTTAGGGCTCTCTTTGAGCTTTCTTTGCTTGATCAGA 300 Query 369 GTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTT 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTT 360 Query 429 ATACTCTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTTTTTCGAAGACTTATGC 488 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 ATACACTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTTTTTAGAAGACTTATGC 420 Query 489 TGGAAACATCTGATTTTCTGAAGGATGATTGTCTGAAAATTAATTGCACCGTGGGAGTTG 548 |||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| Sbjct 421 TGGAAACATCTGATTTTCTGAAGGATGATTGTTTGAAAATTAATTGTACTGTGGGAGTTG 480 Query 549 TGGTCTCAGAAATAGATTGCCCACGGTTACATTCTATTCATGTCCCTGCATCTGATATTG 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGGTCTCAGAAATAGATTGCCCACGGTTACATTCTATTCATGTCCCTGCATCTGATATTG 540 Query 609 GATCTCATTTCGGGATGCTTCTAGAGAACGAGGACGGTTCAGATATAACTTTTAACGTCT 668 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 541 GATCTCATTTCGGGATGCTTCTGGAGAATGAGGACGGTTCAGATATAACTTTTAATGTCT 600 Query 669 CTGGTGAAAAGTTCCGTGCTCACAGGTTAGTATTGGCTGCTCGATCTCCTGTCTTTGAAA 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTGGTGAAAAGTTCCGTGCTCACAGGTTAGTATTGGCTGCTCGATCTCCTGTCTTTGAAA 660 Query 729 GCGAGTTCCTCGATGTTACGGGAGAAGAAGATCGTGATATCGAAGTTACTGACATGGAGC 788 ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 661 GCGAGTTCCTCGATGATACTGGAGAAGAAGATCGTGATATTGAAGTTACTGACATGGAGC 720 Query 789 CTAAGGTTTTCAAGGCTTTGCTCCACTACATATACAAGGATGCTCTCATTGAAGATGCAG 848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CTAAGGTTTTCAAGGCTTTGCTCCACTACATATACAAGGATGCTCTCATTGAAGATGCAG 780 Query 849 AGTCATCATCATCTTCCGGTTCATCTGTTGGTCCATCTGCCTCAGACACATTAGCTGCAA 908 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 781 AGTCATCATCATCTTCCGGTTCATCTGTTGGTCCATCTGCATCAGACACATTAGCTGCAA 840 Query 909 AGCTACTAGGAGCCGCTGATAAATACAAGTTGCCTAGATTAAGTCTAATGTGCGAGTCAG 968 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 841 AGCTACTAGGAGCCGCTGATAAATACAAGTTGCCTAGACTAAGTCTAATGTGCGAGTCAG 900 Query 969 TGCTCTGCAAGGATATATCAGTAGATTCCGTTGCAAATATTTTGGCGCTTGCTGACCGTT 1028 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 901 TGCTCTGCAAGGATATATCAGTAGATTCCGTTGCAAATATTTTGGCGCTTGCTGACCGCT 960 Query 1029 ACAATGCTTCCGCCTTGAAATCCGTTTGTCTGAAATTCGCAGCAGAAAATCTCATCGCTG 1088 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 961 ACAATGCTTCCGCCTTGAAATCTGTTTGTCTGAAATTCGCAGCAGAAAATCTCATCGCTG 1020 Query 1089 TTATGAGGTCAGATGGGTTTGATTATCTAAGGGAACACTGCCCGTCACTTCAGTCTGAGC 1148 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1021 TTATGAGGTCAGATGGGTTTGATTATCTAAGGGAACACTGCCCATCACTTCAGTCTGAAC 1080 Query 1149 TTCTGAAAACAGTTGCGGGTTGCGAAGAGGAGTTAAGCGGAGGAGGAGGGAAGACGAGAA 1208 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1081 TTCTGAAAACAGTTGCGGGATGCGAAGAGGAGTTAAGCGGAGGAGGAGGGAAGACGAGAA 1140 Query 1209 GCGTATGGGGCCAATTCTCAGACGGTGGAGCTGAGACAAA---------CGGAAGACAAG 1259 |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1141 GCGTATGGGGCCAATTCTCAGACGGTGGAGCTGAGACAAATGAGAGAAACGGAAGACAAC 1200 Query 1260 CACAGACTTGGGGAGATATCAATGGAGGAGCAGAGAGAAGCCAGAGTGTTTGGGTCGAAG 1319 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| Sbjct 1201 CACAGACTTGGGGAGATATCAATGGAGCAGCAGAGAGAAGCCAGAGTGTTTGGCTTGAAG 1260 Query 1320 TTGTGAACGCTAATGGAAGCGGTAGAAACAATAATGACAACAATAACAGTGATGACCCAA 1379 |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1261 TTGTTAACGCTAATGCAAGTAGTAGAAACAATAATGACAACAATAACAGTGATGACCCAA 1320 Query 1380 TGGCAGAACTAGAAGATTGAGCAAATAAAAGGTAATAAAA 1419 |||||||| || |||||||||||||||||||||||| Sbjct 1321 TGGCAGAA---GA---TTGAGCAAATAAAAGGTAATAAAA 1354 > Ahg952585 jgi|Araly1|952585|scaffold_91900001.1 Length=418 Score = 640 bits (346), Expect = 0.0 Identities = 374/387 (97%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 75 GACGAAA-TTTCG-AAATGCCATCGCCACCGACGACGACTTCTCTCTCGGTGACACAGAC 132 ||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||| || Sbjct 5 GACGAAATTTTCGAAAATGCCATCGCCACCGACGACGACTTCTCTCTCCGTCACACAAAC 64 Query 133 CATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCTAAAGGAATCGGGAT 192 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 65 CATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCCAAAGGAATCGGGAT 124 Query 193 CGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATCAATGGGCTATCTATTT 252 |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct 125 CGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAGGCTATCAATGGGCAATCTATTT 184 Query 253 CTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGCT-T 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 185 CTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGCTCT 244 Query 312 TAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCTTTGCTTGATCAGAGTG 371 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 245 T-GCTAGCGATGGTACCGATGTTAGGGCTCTCTTTGAGCTTTCTTTGCTTGATCAGAGTG 303 Query 372 GTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTTATA 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 GTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTTATA 363 Query 432 CTCTCAAGTATCGTGGCAGCATGTGGG 458 | ||||||||||||||||||||||||| Sbjct 364 CACTCAAGTATCGTGGCAGCATGTGGG 390 > Ahg936962 jgi|Araly1|936962|scaffold_501153.1 Length=1291 Score = 351 bits (190), Expect = 7e-96 Identities = 479/615 (78%), Gaps = 34/615 (6%) Strand=Plus/Plus Query 119 TCGGTGACACAGACCATAAACGGATCACA-CAGCTTCACAATCAAAGGCTATTCTTTGGC 177 |||||||| ||||| | ||||||||| || || ||| ||| |||| || ||| || Sbjct 105 TCGGTGACGCAGACGACAAACGGATCGCACCA-ATTCGTGATCCAAGGATACAGTTTAGC 163 Query 178 TAAAGGAATCGGGA-TCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATC 236 |||||||||| ||| | || |||||||| || || |||| |||| ||||||| ||||||| Sbjct 164 TAAAGGAATC-GGAGTAGGGAAACACATAGCAAGTGATAATTTCTCCGTCGGAGGTTATC 222 Query 237 AATGGGCTATCTATT-TCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTC 295 ||||| |||||| || |||| || ||||| || ||||| || ||||| || |||| ||| Sbjct 223 AATGGACTATCT-TTGTCTACCCAGATGGTAAAAATCCAGAAGATAACTCTTCTTACGTC 281 Query 296 TCCGTTTTCATTGCTTTAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCT 355 || || ||||| | ||| ||||| || ||||| || ||||| || |||||||||||| || Sbjct 282 TCTGTGTTCATCGTTTTGGCTAGTGAAGGTACTGAAGTTAGAGCGCTTTTTGAGCTTGCT 341 Query 356 -TTGCTTGATCAGAGTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCG-TGCTC 413 ||| ||||||| |||||||||||||||||||||||||||||||| |||||||| | | | Sbjct 342 CTTG-TTGATCAAAGTGGTAAAGGGAAGCATAAGGTTCATAGCCATTTCGATCGGT-CGC 399 Query 414 TTGA-GAGCGGTCCTTATACTCTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTT 472 |||| | | |||||||| || || || ||| | || || |||||||| |||||||| ||| Sbjct 400 TTGATG-GTGGTCCTTACACGCTTAAATATAGAGGAAGTATGTGGGGATACAAGCG-TTT 457 Query 473 TTTCGAAGAC-TTA-T-GCTGGAAACATCTGATTTTCTGAAGGATGATTGTCT-GAAAAT 528 ||| | ||| || | ||| || |||||||| | || || || ||||| || |||||| Sbjct 458 CTTC-A-GACGTTCCTTGCTTGAGACATCTGACTACCTTAAAGACGATTG-CTTGAAAAT 514 Query 529 TAATTGCACCGTGGGAGTTGTGGTCTCAGAAATAGATTGCCCACGGTTACAT-TCTATTC 587 ||||| || || |||||||| || ||||||||| |||||||||| |||| | || |||| Sbjct 515 CAATTGTACAGTTGGAGTTGTCGTTTCAGAAATACATTGCCCACGATTAC-TCTCGATTC 573 Query 588 ATGTCCCTG-CATCTGATA-TTGGATCTCATTTCGGGATGCTT-CTAGAGAACG--AGGA 642 ||||||| | | || || | ||||||| ||||| || | | || || || | | || | Sbjct 574 ATGTCCCAGAC-TCAGA-ACTTGGATCACATTTTGGAAAG-TTGCTGGATA-CTTTAGAA 629 Query 643 CGGTTCAGATATAACTTTTAACGTCT-CTGGTGAAAAGTTCCGTGCTCACAGGTTAGTAT 701 ||||||||| | || ||| || | | ||||||| ||||| | ||||| | || || | Sbjct 630 -GGTTCAGATGTCACATTTGACAT-TGCTGGTGAGAAGTTTCAAGCTCATAAATTGGTTT 687 Query 702 TGGCTGCTCGATCTC 716 ||||||| ||||||| Sbjct 688 TGGCTGCACGATCTC 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60982482245 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5