BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03740.1
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927902 jgi|Araly1|927902|scaffold_300359.1 2207 0.0
Ahg952585 jgi|Araly1|952585|scaffold_91900001.1 640 0.0
Ahg936962 jgi|Araly1|936962|scaffold_501153.1 351 7e-96
> Ahg927902 jgi|Araly1|927902|scaffold_300359.1
Length=1354
Score = 2207 bits (1195), Expect = 0.0
Identities = 1308/1360 (96%), Gaps = 18/1360 (1%)
Strand=Plus/Plus
Query 71 CAACGACGAAA-TTTCGAAATGCCATCGCCACCGACGACGACTTCTCTCTCGGTGACACA 129
||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2 CAACGACGAAATTTTCGAAATGCCATCGCCACCGACGACGACTTCTCTCTCCGTCACACA 61
Query 130 GACCATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCTAAAGGAATCGG 189
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 62 AACCATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCCAAAGGAATCGG 121
Query 190 GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATCAATGGGCTATCTA 249
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 122 GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAGGCTATCAATGGGCAATCTA 181
Query 250 TTTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGC 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGC 241
Query 310 T-TTAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCTTTGCTTGATCAGA 368
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 242 TCTT-GCTAGCGATGGTACCGATGTTAGGGCTCTCTTTGAGCTTTCTTTGCTTGATCAGA 300
Query 369 GTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTT 360
Query 429 ATACTCTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTTTTTCGAAGACTTATGC 488
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 ATACACTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTTTTTAGAAGACTTATGC 420
Query 489 TGGAAACATCTGATTTTCTGAAGGATGATTGTCTGAAAATTAATTGCACCGTGGGAGTTG 548
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 421 TGGAAACATCTGATTTTCTGAAGGATGATTGTTTGAAAATTAATTGTACTGTGGGAGTTG 480
Query 549 TGGTCTCAGAAATAGATTGCCCACGGTTACATTCTATTCATGTCCCTGCATCTGATATTG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGTCTCAGAAATAGATTGCCCACGGTTACATTCTATTCATGTCCCTGCATCTGATATTG 540
Query 609 GATCTCATTTCGGGATGCTTCTAGAGAACGAGGACGGTTCAGATATAACTTTTAACGTCT 668
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 541 GATCTCATTTCGGGATGCTTCTGGAGAATGAGGACGGTTCAGATATAACTTTTAATGTCT 600
Query 669 CTGGTGAAAAGTTCCGTGCTCACAGGTTAGTATTGGCTGCTCGATCTCCTGTCTTTGAAA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGGTGAAAAGTTCCGTGCTCACAGGTTAGTATTGGCTGCTCGATCTCCTGTCTTTGAAA 660
Query 729 GCGAGTTCCTCGATGTTACGGGAGAAGAAGATCGTGATATCGAAGTTACTGACATGGAGC 788
||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 661 GCGAGTTCCTCGATGATACTGGAGAAGAAGATCGTGATATTGAAGTTACTGACATGGAGC 720
Query 789 CTAAGGTTTTCAAGGCTTTGCTCCACTACATATACAAGGATGCTCTCATTGAAGATGCAG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTAAGGTTTTCAAGGCTTTGCTCCACTACATATACAAGGATGCTCTCATTGAAGATGCAG 780
Query 849 AGTCATCATCATCTTCCGGTTCATCTGTTGGTCCATCTGCCTCAGACACATTAGCTGCAA 908
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 AGTCATCATCATCTTCCGGTTCATCTGTTGGTCCATCTGCATCAGACACATTAGCTGCAA 840
Query 909 AGCTACTAGGAGCCGCTGATAAATACAAGTTGCCTAGATTAAGTCTAATGTGCGAGTCAG 968
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 AGCTACTAGGAGCCGCTGATAAATACAAGTTGCCTAGACTAAGTCTAATGTGCGAGTCAG 900
Query 969 TGCTCTGCAAGGATATATCAGTAGATTCCGTTGCAAATATTTTGGCGCTTGCTGACCGTT 1028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 TGCTCTGCAAGGATATATCAGTAGATTCCGTTGCAAATATTTTGGCGCTTGCTGACCGCT 960
Query 1029 ACAATGCTTCCGCCTTGAAATCCGTTTGTCTGAAATTCGCAGCAGAAAATCTCATCGCTG 1088
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 961 ACAATGCTTCCGCCTTGAAATCTGTTTGTCTGAAATTCGCAGCAGAAAATCTCATCGCTG 1020
Query 1089 TTATGAGGTCAGATGGGTTTGATTATCTAAGGGAACACTGCCCGTCACTTCAGTCTGAGC 1148
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1021 TTATGAGGTCAGATGGGTTTGATTATCTAAGGGAACACTGCCCATCACTTCAGTCTGAAC 1080
Query 1149 TTCTGAAAACAGTTGCGGGTTGCGAAGAGGAGTTAAGCGGAGGAGGAGGGAAGACGAGAA 1208
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTCTGAAAACAGTTGCGGGATGCGAAGAGGAGTTAAGCGGAGGAGGAGGGAAGACGAGAA 1140
Query 1209 GCGTATGGGGCCAATTCTCAGACGGTGGAGCTGAGACAAA---------CGGAAGACAAG 1259
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1141 GCGTATGGGGCCAATTCTCAGACGGTGGAGCTGAGACAAATGAGAGAAACGGAAGACAAC 1200
Query 1260 CACAGACTTGGGGAGATATCAATGGAGGAGCAGAGAGAAGCCAGAGTGTTTGGGTCGAAG 1319
||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 1201 CACAGACTTGGGGAGATATCAATGGAGCAGCAGAGAGAAGCCAGAGTGTTTGGCTTGAAG 1260
Query 1320 TTGTGAACGCTAATGGAAGCGGTAGAAACAATAATGACAACAATAACAGTGATGACCCAA 1379
|||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TTGTTAACGCTAATGCAAGTAGTAGAAACAATAATGACAACAATAACAGTGATGACCCAA 1320
Query 1380 TGGCAGAACTAGAAGATTGAGCAAATAAAAGGTAATAAAA 1419
|||||||| || ||||||||||||||||||||||||
Sbjct 1321 TGGCAGAA---GA---TTGAGCAAATAAAAGGTAATAAAA 1354
> Ahg952585 jgi|Araly1|952585|scaffold_91900001.1
Length=418
Score = 640 bits (346), Expect = 0.0
Identities = 374/387 (97%), Gaps = 4/387 (1%)
Strand=Plus/Plus
Query 75 GACGAAA-TTTCG-AAATGCCATCGCCACCGACGACGACTTCTCTCTCGGTGACACAGAC 132
||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 5 GACGAAATTTTCGAAAATGCCATCGCCACCGACGACGACTTCTCTCTCCGTCACACAAAC 64
Query 133 CATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCTAAAGGAATCGGGAT 192
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 65 CATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCCAAAGGAATCGGGAT 124
Query 193 CGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATCAATGGGCTATCTATTT 252
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 125 CGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAGGCTATCAATGGGCAATCTATTT 184
Query 253 CTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGCT-T 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 185 CTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGCTCT 244
Query 312 TAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCTTTGCTTGATCAGAGTG 371
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 245 T-GCTAGCGATGGTACCGATGTTAGGGCTCTCTTTGAGCTTTCTTTGCTTGATCAGAGTG 303
Query 372 GTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTTATA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTTATA 363
Query 432 CTCTCAAGTATCGTGGCAGCATGTGGG 458
| |||||||||||||||||||||||||
Sbjct 364 CACTCAAGTATCGTGGCAGCATGTGGG 390
> Ahg936962 jgi|Araly1|936962|scaffold_501153.1
Length=1291
Score = 351 bits (190), Expect = 7e-96
Identities = 479/615 (78%), Gaps = 34/615 (6%)
Strand=Plus/Plus
Query 119 TCGGTGACACAGACCATAAACGGATCACA-CAGCTTCACAATCAAAGGCTATTCTTTGGC 177
|||||||| ||||| | ||||||||| || || ||| ||| |||| || ||| ||
Sbjct 105 TCGGTGACGCAGACGACAAACGGATCGCACCA-ATTCGTGATCCAAGGATACAGTTTAGC 163
Query 178 TAAAGGAATCGGGA-TCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATC 236
|||||||||| ||| | || |||||||| || || |||| |||| ||||||| |||||||
Sbjct 164 TAAAGGAATC-GGAGTAGGGAAACACATAGCAAGTGATAATTTCTCCGTCGGAGGTTATC 222
Query 237 AATGGGCTATCTATT-TCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTC 295
||||| |||||| || |||| || ||||| || ||||| || ||||| || |||| |||
Sbjct 223 AATGGACTATCT-TTGTCTACCCAGATGGTAAAAATCCAGAAGATAACTCTTCTTACGTC 281
Query 296 TCCGTTTTCATTGCTTTAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCT 355
|| || ||||| | ||| ||||| || ||||| || ||||| || |||||||||||| ||
Sbjct 282 TCTGTGTTCATCGTTTTGGCTAGTGAAGGTACTGAAGTTAGAGCGCTTTTTGAGCTTGCT 341
Query 356 -TTGCTTGATCAGAGTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCG-TGCTC 413
||| ||||||| |||||||||||||||||||||||||||||||| |||||||| | | |
Sbjct 342 CTTG-TTGATCAAAGTGGTAAAGGGAAGCATAAGGTTCATAGCCATTTCGATCGGT-CGC 399
Query 414 TTGA-GAGCGGTCCTTATACTCTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTT 472
|||| | | |||||||| || || || ||| | || || |||||||| |||||||| |||
Sbjct 400 TTGATG-GTGGTCCTTACACGCTTAAATATAGAGGAAGTATGTGGGGATACAAGCG-TTT 457
Query 473 TTTCGAAGAC-TTA-T-GCTGGAAACATCTGATTTTCTGAAGGATGATTGTCT-GAAAAT 528
||| | ||| || | ||| || |||||||| | || || || ||||| || ||||||
Sbjct 458 CTTC-A-GACGTTCCTTGCTTGAGACATCTGACTACCTTAAAGACGATTG-CTTGAAAAT 514
Query 529 TAATTGCACCGTGGGAGTTGTGGTCTCAGAAATAGATTGCCCACGGTTACAT-TCTATTC 587
||||| || || |||||||| || ||||||||| |||||||||| |||| | || ||||
Sbjct 515 CAATTGTACAGTTGGAGTTGTCGTTTCAGAAATACATTGCCCACGATTAC-TCTCGATTC 573
Query 588 ATGTCCCTG-CATCTGATA-TTGGATCTCATTTCGGGATGCTT-CTAGAGAACG--AGGA 642
||||||| | | || || | ||||||| ||||| || | | || || || | | || |
Sbjct 574 ATGTCCCAGAC-TCAGA-ACTTGGATCACATTTTGGAAAG-TTGCTGGATA-CTTTAGAA 629
Query 643 CGGTTCAGATATAACTTTTAACGTCT-CTGGTGAAAAGTTCCGTGCTCACAGGTTAGTAT 701
||||||||| | || ||| || | | ||||||| ||||| | ||||| | || || |
Sbjct 630 -GGTTCAGATGTCACATTTGACAT-TGCTGGTGAGAAGTTTCAAGCTCATAAATTGGTTT 687
Query 702 TGGCTGCTCGATCTC 716
||||||| |||||||
Sbjct 688 TGGCTGCACGATCTC 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60982482245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5