BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03750.2
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477623 jgi|Araly1|477623|fgenesh2_kg.3__324__AT3G03750.2 1881 0.0
> Ahg477623 jgi|Araly1|477623|fgenesh2_kg.3__324__AT3G03750.2
Length=1593
Score = 1881 bits (1018), Expect = 0.0
Identities = 1458/1656 (88%), Gaps = 88/1656 (5%)
Strand=Plus/Plus
Query 36 GCGAGAGTCACCACCACCGAAGACGCGTTGTCTTGGAGAAGCTTCCGACATTATTCCGGC 95
|||||||| |||||||||||| ||||| ||| |||||||||||||||||||||| |||
Sbjct 6 GCGAGAGT---CACCACCGAAGAAGCGTTCTCTCGGAGAAGCTTCCGACATTATTCTGGC 62
Query 96 CGCCGATCGATTTCTCCGATGTGCGAATTTGATTCTCCCATGGCTAAACCCTCGAGAACT 155
| || | | |||| ||||||||||||| || ||| | ||||| |||||||||| ||||||
Sbjct 63 CACCAAACTATTTTTCCGATGTGCGAACTTAATTATTCCATGCCTAAACCCTCAAGAACT 122
Query 156 CGCCGTTGTTGCTCAAACCTGCAAAACCTTATCCCTAATCTCGAAATCTCTAACCATTCA 215
||||||||| ||||||||||||||||||||||||||||| || |||||| ||||| ||||
Sbjct 123 CGCCGTTGTCGCTCAAACCTGCAAAACCTTATCCCTAATTTCCAAATCTATAACCTTTCA 182
Query 216 CCGATCTCTCGACGCTGCACGATCCTTGGAAAACATCTCAATCCCGTTTCACAACTCCAT 275
|||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 183 CCGATCCCTTGACGCTGCACGATCCTTGGAAAACCTCTCAATCCCGTTTCACAACTCCAT 242
Query 276 CGATTCTCAACGATACGCGTACTTCATCTACACACCTTTTCAGATCCCCGCTTCATCTCC 335
|||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||| | |
Sbjct 243 CGATTCTCAACGATACGCTTACTTCATCTACACACCATTTCAGATTCCCGCGTCA--T-C 299
Query 336 TCCTCCGCCGCGACAATGGTGGGGAGCTGCTGCTAATGAATGTGGATCGGAGTCTAGACC 395
||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||
Sbjct 300 TCCTCCGCCGCGACAATGGTGGGGA---GCTGCTACTGAATGTGGATCCGAGTCGAGACC 356
Query 396 TTGTTTTGACTCAGTGAGTGAAAGCGGACGTTTTGGGGTGAGTTTAGTGGACGAGTCAGG 455
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 357 TTGTTTTGACTCAGTGAGTGAACGCGGACGTTTTGGGGTGAGTCTAGTGGACGAGTCAGG 416
Query 456 ATGCGAATGCGAGAGGTGTGAGGAAGGATACTGCAAGTGTTTAGCTTTCGCGGGGATGGA 515
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 ATGCGAATGCGAGAGGTGTGAGGAAGGATACTGCAAGTGTTTAGCTTTCGTTGGGATGGA 476
Query 516 AGAGATAGCTAACGAATGTGGGTCGGGTTGTGGATGCGGGTCCGATTGTTCGAACCGGGT 575
||||| | ||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 477 GGAGATTGGTAATGAATGCGGGTCGGGTTGTGGATGCGGGTCGGATTGTTCGAACCGGGT 536
Query 576 TACGCAGAAGGGGGTTTCGGTTAGTTTGAAGATTGTGAGAGATGAGAAGAAAGGTTGGTG 635
||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 TACACAAAAGGGGATTTCGGTTAGTTTGAAGATTGTAAGAGATGAGAAGAAAGGTTGGTG 596
Query 636 CTTGTACGCTGACCAGCTTATCAAGCAAGGCCAATTCATCTGTGAATATGCAGGTGAGCT 695
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTTGTACGCTGATCAGCTTATCAAGCAAGGCCAATTCATCTGTGAATATGCAGGTGAGCT 656
Query 696 ATTGACAACAGATGAAGCACGTAGACGTCAAAACATTTACGACAAACTCAGATCAACACA 755
||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 657 ATTGACAACTGATGAAGCACATAGACGTCAAAACATTTACGACAAACTGAGATCAACACA 716
Query 756 ATCCTTCGCTTCAGCTCTTTTGGTCGTACGCGAACACCTCCCTTCAGGACAAGCTTGTTT 815
||| ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 717 ATCTTTCGCGTCGGCTCTTTTGGTCATACGCGAACACCTCCCTTCAGGACAAGCTTGTTT 776
Query 816 AAGGATAAACATCGACGCCACAAGAATTGGGAACGTTGCTAGATTCATCAACCATTCTTG 875
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AAGGATAAACATCGATGCCACAAGAATTGGGAACGTTGCTAGATTCATCAACCATTCTTG 836
Query 876 TGACGGTGGAAATCTCTCCACTGTTCTGTTGAGAAGCTCAGGAGCGTTGCTTCCTCGGCT 935
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 837 TGACGGCGGAAATCTCTCCACCGTTCTGTTGAGAAGCTCAGGAGCATTGCTTCCTAGGCT 896
Query 936 CTGTTTCTTTGCAGCAAAGGACATAATCGCAGAGGAGGAGTTAAGTTTCAGTTATGGAGA 995
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 897 CTGTTTCTTTGCAGCAAGGGACATAATTGCAGAGGAGGAGTTAAGTTTCAGTTATGGAGA 956
Query 996 CGTAAGTGTGGCCGGAGAGAACAGAGACGACAAGCTAAACTGCTCTTGTGGTAGTTCCTG 1055
||| |||| ||||||||||||||||| ||||| |||| |||| ||||||||||||||
Sbjct 957 CGTCCGTGTCACCGGAGAGAACAGAGACAACAAGTTAAATTGCTGTTGTGGTAGTTCCTA 1016
Query 1056 CTGTTTGGGAACGTTGCCTTGTGAGAATACCTGAATTCATCATCA-T-C-T----T-GTC 1107
|||||| ||||||||||||||||||||||||||| |||||||||| | | | | |||
Sbjct 1017 CTGTTTTGGAACGTTGCCTTGTGAGAATACCTGATTTCATCATCAGTTCATCACCTTGTC 1076
Query 1108 TCGCTATACTAATGTCCAA--CACTCTTATTATTTGAAAAATTCGAG-TTCTATGTTTGT 1164
| |||||||||||||||| |||||||||||| |||||| || ||| || ||||||| |
Sbjct 1077 TATCTATACTAATGTCCAAAACACTCTTATTATGTGAAAATTTTGAGCTT-TATGTTTCT 1135
Query 1165 AGCAAACACAACCAAGCACCGTCATTGTCATTCGGAAGTTACACT-TTCTT-ATTAA-TA 1221
|||||| ||| |||||||||||||||||||||||| ||||||||| || || | || ||
Sbjct 1136 AGCAAATACAGCCAAGCACCGTCATTGTCATTCGGTAGTTACACTCTTTTTTAAAAAATA 1195
Query 1222 GCGGCTCTACTGATTTGGAGAAGGAATGGGGGAAATTTAGAAGTAATTCACGAAAATGAA 1281
||| ||||||||| ||||||| ||| ||| ||||||||||| | | ||||||||| ||
Sbjct 1196 GCGATTCTACTGATGTGGAGAAAGAAAGGGAGAAATTTAGAA-T--T-CACGAAAATCAA 1251
Query 1282 CCCACCAAAATGAAGTCATGAAATACTAAGAATTTCGTGAAATAAAACTAATTTTGAAAA 1341
|| ||||| | || | |||| | || |||||| |||| || |||||||||
Sbjct 1252 GTCAT-AAAAT-AC-TC-T-AAAT--T-----TT--GTGAAAAAAAAGTATTTTTGAAAA 1297
Query 1342 TGGCAAA-GTACGGAAAAA-GAAAAGGGAGGATTAATGTTGTGAAGAAAAGGAGCACGAC 1399
|| |||| ||| | ||||| |||||||||||| | ||||||||||| ||||||||||||
Sbjct 1298 TGACAAAAGTAAGAAAAAAAGAAAAGGGAGGA--A-TGTTGTGAAGATAAGGAGCACGAC 1354
Query 1400 AGACATGAAGGTTGGTTAGCTTACTAAAGAACTCCACACGAAACGGTCAACACGATTCTC 1459
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1355 AGACATGAAGGTTGGTTAGATTAC-AAAGAACTCCACACGAAACGGTCAACACGATTCTC 1413
Query 1460 GTGCCTCTCCTCTCTCAGACACTCTCACATATATACTTACTTCTCTATCCATACGAAATT 1519
||||||||||||||||||||| ||| | | | | | | |||||||
Sbjct 1414 GTGCCTCTCCTCTCTCAGACA-TCT-A--T-----C---C------AG--A--CGAAATT 1451
Query 1520 ACGTACGAATACGATACTTAGATTGTGGTAGCTAGCTATACTATACAATTTGTTATTAAT 1579
||| | | |||||||| ||| ||| | | |||| |||||||| ||||||||||
Sbjct 1452 ACG-A--A-TACGATACATAG-TTG----A--T-GCTA--CTATACAAGGTGTTATTAAT 1497
Query 1580 CATTGTATCGTACAT--TT-GTTTTACCTTTTGAGACAATTAACTTTCGTCTGATTTATC 1636
||||||||||||||| || |||| |||||||||||||| ||||||| ||||||||||||
Sbjct 1498 CATTGTATCGTACATGATTTGTTTAACCTTTTGAGACAACTAACTTTGGTCTGATTTATC 1557
Query 1637 TTCCTTTTTT-CCTTAAGATAAAGAACATTCATGTG 1671
|||||||||| |||| |||||||||||||| |||||
Sbjct 1558 TTCCTTTTTTTCCTTGAGATAAAGAACATTAATGTG 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5