BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03760.1
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340538 jgi|Araly1|340538|fgenesh1_pg.C_scaffold_3000301 876 0.0
> Ahg340538 jgi|Araly1|340538|fgenesh1_pg.C_scaffold_3000301
Length=846
Score = 876 bits (474), Expect = 0.0
Identities = 508/525 (97%), Gaps = 0/525 (0%)
Strand=Plus/Plus
Query 76 ATGGCTGATCAGCAGCGAGGCCACAACACCTCAGATTCTCGCCGGAAATCTCTAGCCGGA 135
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCTGATCAGCAGCGAGGCCACCACACCTCAGATTCTCGCCGGAAATCACTAGCCGGA 60
Query 136 AAAAGAACCTCACAGCAAACTCCGACGTCATCACTTAGTTCCGGCGGAGTATCCATGGCA 195
||| |||||||||| |||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 61 AAACGAACCTCACAACAAACTCCGACGCCGTCACTTAGTTCCGGCGGAGTAGCCATGGCG 120
Query 196 GCTGCAACGACGGGGACAGGGACGGCTTCGCCTTGTGGGGCTTGCAAGTTCTTGAGAAGG 255
||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 121 GCTGCGACGACGGGGACAGGGACGGCGTCTCCGTGTGGGGCTTGCAAGTTCTTGAGAAGG 180
Query 256 AAGTGTGTGAGTGGATGCATTTTCGCTCCACATTTTGGGTCAGACCAAGGAGCGGCTAGG 315
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AAGTGTGTGAGTGGATGCATTTTCGCTCCACATTTCGGGTCAGACCAAGGAGCGGCTAGG 240
Query 316 TTCGCGGCGGTTCATAAGGTTTTCGGAGCCAGCAACGTGTCGAAACTGTTGCATCATATT 375
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 241 TTCGCGGCCGTTCATAAGGTTTTTGGAGCCAGCAACGTGTCGAAACTGTTGCACCATATT 300
Query 376 CCGGTGAACCGTCGTCATGATGCGGTGGTTACGATCTCATACGAGGCTCAAGCTAGGCTC 435
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 CCGGTGAACCGTCGTCATGATGCGGTGGTTACGATCTCATATGAGGCTCAAGCTAGGCTC 360
Query 436 TCTGATCCTGTCTATGGCTGCGTCTCAACCATCCTTGCTCTCCAACAACAGGTGGCCTCG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTGATCCTGTCTATGGCTGCGTCTCAACCATCCTTGCTCTCCAACAACAGGTGGCCTCG 420
Query 496 CTACAGGCGGAGTTATCGGTGGTGCAATCACAACTGATAAACAGTAGAGTCGCAATGGCc 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTACAGGCGGAGTTATCGGTGGTGCAATCACAACTGATAAACAGTAGAGTCGCAATGGCC 480
Query 556 aacgttatgcaacaacaaactcatcaccaacaacagcaacaacaa 600
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AACGTTATGCAACAACAAACTCATCACCAACAACAGCAACAACAA 525
Score = 497 bits (269), Expect = 5e-140
Identities = 315/336 (94%), Gaps = 7/336 (2%)
Strand=Plus/Plus
Query 564 gcaacaacaaactcatcaccaacaacagcaacaacaattagtcgttatgcaacaacCCGA 623
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 516 GCAACAACAAACTCATCACCAACAACAGCAACAACAATTAGTCGTTATGCCACAACCCGA 575
Query 624 ATACTCCAACAACTCCTCCGCCTCCACCACTCTCGCCGGAGCCGCCATGAACAGCTTCAC 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 ATACTCCAACAACTCCTCCGCCTCCACCACTCTCGCCGGAGCCGCCATGAACAGCTTCAC 635
Query 684 CATGACGGCAGATGCAGCAGCCGTCAGCTATGACGTCATGGCTCCGACTAACTTAGAACA 743
| || |||| || | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 636 CGTGGCGGCGGAGGTAGCAGCGGTCAGCTATGACGTCATGGCTCCGACTAACTTAGAACA 695
Query 744 TTCGTTGCAGCCAATGCCACCGCATCAGCAAAGGAGAGGAGATTATCAGCATGAGGATGA 803
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 696 TTCATTGCAGCCAATGCCACCGCATCAGCAAAGGAGAGGAGAT---CAGCATGAGGATGA 752
Query 804 GGAAGAGAGCGGTGCTGATTTTTCGGTGGCTGTTGGATCGACGGCGGTGGCTTC-GAAGG 862
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||
Sbjct 753 GGAAGAGAGCGGTGCTGATTTTTCGGTGGCTGTTGGATCGGCGGCGGTAGCTTCAGA-GG 811
Query 863 TTATATTTCCGGCGGA-GGATTTTCACCGGAGATGA 897
||||||||||| || || || |||||||||||||
Sbjct 812 CAATATTTCCGGCTGATGG-TTATCACCGGAGATGA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39380973261
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5