BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03776.1

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg340541 jgi|Araly1|340541|fgenesh1_pg.C_scaffold_3000304           340    5e-93


> Ahg340541 jgi|Araly1|340541|fgenesh1_pg.C_scaffold_3000304
Length=537

 Score =  340 bits (184),  Expect = 5e-93
 Identities = 214/229 (93%), Gaps = 0/229 (0%)
 Strand=Plus/Plus

Query  53   ATGTGAGTTTCATGATCGACAAGCAAAGCAAAACAGTATATCTATCGGGAAAAGTCGACC  112
            |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||| |
Sbjct  101  ATGTGAGTTTCATGATTGACAAGCAAAGCAAAACGGTATATCTATCTGGAAAAATCGATC  160

Query  113  CACAAATAATACTTGAAAAGATTACAAAAGCAGGCAAAAAAGCGGTTATATTATGGAGCA  172
            ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  161  CACAAGTAATACTTGAAAAGATTACAAAAGCAGGCAAAAAAGCAGTTATAGTATGGAGCA  220

Query  173  ATAACGGACAGAGTAAGCAGCCGGAAAATCGGAAAGACCATTTGATGGAACAACGTTATG  232
            |||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  221  ATAATGGACAGAGTAAGCAGCCGGAAAATCGAAAAGACCATTTGATGGAACAATGTTATG  280

Query  233  CGTCGGGACACATAAATGTTCCTGATGGTTTCTCAAACTATCATCCGCC  281
            |||||||| |||| ||||||||| |||||||||||||||||| ||||||
Sbjct  281  CGTCGGGATACATGAATGTTCCTAATGGTTTCTCAAACTATCCTCCGCC  329


 Score =  287 bits (155),  Expect = 6e-77
 Identities = 226/258 (88%), Gaps = 13/258 (5%)
 Strand=Plus/Plus

Query  282  ATACATGAATGGTCCTAATGGTTTCTCAAACTATCATCTGCCGGATTATTGGATGAATCA  341
            ||||||||||| ||||||||||||||||||||||| || |||  ||||||||||||||||
Sbjct  288  ATACATGAATGTTCCTAATGGTTTCTCAAACTATCCTCCGCCTAATTATTGGATGAATCA  347

Query  342  ACCTCAACTATACAATCC-CACTATATGTCCCccaccaccaccaccgtatccacgtcagg  400
            ||| |||| |||||| || |||| |||||   || |||||||||   ||| |||| ||| 
Sbjct  348  ACCGCAACCATACAA-CCACACTTTATGT---CCTCCACCACCA---TATACACGGCAGC  400

Query  401  tccatccgcagccaccagcaccaccaccGTACAAATTCCATCAGAAAGAACCGGTGGCTA  460
            ||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||
Sbjct  401  TCCATCCGCAGCCACCACCACCACCACCGTACGAATTCCACCAGAAAGAACCGGTGGCTA  460

Query  461  AGAGTTTCCCGCCTACACCAGCTCCGCCTAAAAACTTTACGATGGGAGATTTG-CAACTA  519
            ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct  461  AGAGTTTTCCGCCTACACCAGTTCCGCCTAAAAACTTTACGATGGGAGATTTGACA-CTA  519

Query  520  --T-GCCGGATAATGTGA  534
              | ||  ||||||||||
Sbjct  520  GGTTGCATGATAATGTGA  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19459350390


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5