BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03790.3
Length=3932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477631 jgi|Araly1|477631|fgenesh2_kg.3__332__AT3G03790.2 5144 0.0
Ahg952171 jgi|Araly1|952171|scaffold_43500001.1 145 3e-33
> Ahg477631 jgi|Araly1|477631|fgenesh2_kg.3__332__AT3G03790.2
Length=3895
Score = 5144 bits (2785), Expect = 0.0
Identities = 3113/3272 (95%), Gaps = 20/3272 (1%)
Strand=Plus/Plus
Query 458 AACAAGGTTTTAGTGGGAATTCTTACCGTCTAGAAATATGGAATTGTCAGTCTCTCCTCA 517
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 331 AACAAGGTTTTAGTGGGAATTCTTGCCGTCTGGAAATATGGAATTGTCAGTCTCTCCTCA 390
Query 518 AACCCAAAAGATGAACCTGCAAACTCCTCGTAAAAGCTCACTTTCAGGATCTAGGAAAGA 577
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 391 AACCCAAAAGATGAACCTGCAAACTCCTCGCAAAAGCTCACTTTCAGGATCTAGGAAAGA 450
Query 578 TTTGTGGTTTGCTATACGGGAAGGTTCGTTGGTTGATGTGGATTCAGCACTTAGCATACT 637
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 451 TTTGTGGTTTGCTATACGGGAAGGGTCATTGGTTGATGTGGATTCAGCACTGAGCATACT 510
Query 638 CAAGAAGACTGGTGGCAATATAAATTTAAGGAATG-CCTATGGTCTCACTCCTCTGCATA 696
||||||| |||||||||||||||||||||||||| || ||||||| |||||||||||||
Sbjct 511 GAAGAAGAATGGTGGCAATATAAATTTAAGGAATGTCC-ATGGTCTGACTCCTCTGCATA 569
Query 697 TTGCTGTATGGAGAAATCACATTCCTATTGTTAGGAGACTGCTTGCTGCTGGCGCTGATC 756
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 570 TTGCTGTATGGAGAAATCACATTCCTATTGTTAGGAGACTGCTTGCAGCTGGCGCCGATC 629
Query 757 CAGATGCTAGGGATGGAGAATCTGGTTGGAGTAGTCTTCACCGAGCTTTGCATTTTGGCC 816
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 630 CAGATGCTAGGGATGGAGAATCTGGGTGGAGTAGTCTTCACCGAGCTTTGCATTTTGGCC 689
Query 817 ATCTCGCGGTAGCTAGCGTATTGATTGACTCAGGTGCTTCTTTTACTCTAGAAGACATAA 876
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 690 ATCTCGCGGTAGCTAGCGTACTAATTGACTCAGGTGCTTCTTTTACTCTAGAAGACATAA 749
Query 877 AACTGCGAACACCGGTTGATTTGGTCTCAGGTCCAGTGGCTCAGGTTATTGGCGAGCAAC 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 AACTGCGAACACCGGTTGATTTGGTCTCAGGTCCAGTGGCTCAGGTTATTGGCGAGCAAC 809
Query 937 AAAGTTCGGTGGCTACAGAGGTTTTCAGCTGGGGAAATGGTGCAAACTACCAACTTGGAA 996
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 AGAGTTCGGTCGCTACAGAGGTTTTCAGCTGGGGAAATGGTGCAAACTACCAACTTGGAA 869
Query 997 CTGGCAATCAACATGTTCAGAAGGTACCAGGGAGAGTTGATTCACTGCATGGTTGTTTTA 1056
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 870 CTGGCAATCAACATGTTCAGAAGGTACCCGGCAGAGTTGATTCACTGCATGGTTGTTTTA 929
Query 1057 TTAAGTTGGTCTCCGCTGCAAAGTTTCATAGTGTTGCCATTAGTACTCATGGAGAAGTCT 1116
||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 930 TTAAGTTGGTCTCTGCTGCAAAGTTCCATAGTGTTGCCATTAGTTCTCATGGAGAAGTCT 989
Query 1117 ACACGTGGGGATTTGGAAGGGGTGGCCGCCTTGGACATCCTGAATTTGACATTCATAGTG 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 990 ACACGTGGGGATTTGGAAGGGGTGGCCGCCTTGGACATCCTGAATTTGACATTCACAGTG 1049
Query 1177 GTCAAGCTGCAGTGATTACTCCCCGCCAGGTGATATCTGGTTTAGGATCTCGCCGTGTAA 1236
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GTCAAGCTGCTGTTATTACTCCCCGCCAGGTGATATCTGGTTTAGGATCTCGCCGTGTAA 1109
Query 1237 AAGCAGTTGCGGCAGCTAAGCACCACACTGTTATTGCTACAGAAGGCGGGGATGTGTACA 1296
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1110 AGGCAGTTGCGGCAGCTAAGCACCACACTGTTATTGCTACGGAAGGCGGGGATGTATACA 1169
Query 1297 CATGGGGTTCCAATAGAGAGGGTCAGCTTGGTTATACCTCTGTGGATACTCAGGCAACAC 1356
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1170 CATGGGGTTCCAATAGAGAGGGTCAGCTTGGTTATACCTCCGTGGATACTCAGGCAACTC 1229
Query 1357 CCCGCAAAGTGACTTCATTGAAGGCGAAGATTGTAGCTGTTTCTGCAGCAAACAAACACA 1416
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1230 CCCGAAAAGTGACTTCATTGAAGGCGAAGATTGTAGCTGTTTCTGCAGCAAACAAACATA 1289
Query 1417 CCGCCGTAGTTTCTGACTGCGGTGAAGTTTTCACTTGGGGATGCAACAAGGAAGGTCAGC 1476
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 CCGCCGTAGTTTCTGAGTGCGGTGAAGTTTTCACTTGGGGATGCAACAAGGAAGGTCAGC 1349
Query 1477 TTGGTTATGGAACCTCCAACTCAGCATCAAACTACTCTCCCAGATTGGTTGATTACTTGA 1536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1350 TTGGTTATGGAACCTCCAACTCAGCATCAAACTATTCTCCCAGATTGGTTGATTACTTGA 1409
Query 1537 AAGGAAAAGTGTTCACGGCTATTGCATCTTCAAAATATCACACTCTAGTGCTGCGAAATG 1596
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1410 AAGGAAAAGTTTTCACGGCTATTGCATCTTCAAAATATCACACTCTAGTGTTGCGAAACG 1469
Query 1597 ATGGAGAGGTGTACACCTGGGGTCATCGGCTGGTGACTCCAAGACGTGTTATCATTTCCC 1656
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1470 ATGGAGAGGTGTACACCTGGGGTCATCGGCTGGTGACTCCAAGACGTATTATCATTTCCC 1529
Query 1657 GGAATTTAAAGAAAGCTGGGAACACACTATTGAATTTTCATCGAAGGAGACCTCTTCGAT 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 GGAATTTAAAGAAAGCTGGGAACACACTATTGAATTTTCATCGAAGGAGACCTCTTCGAT 1589
Query 1717 TGACTGCAATAGCTGCGGGAATGGTACACAGCTTGGCTCTAGCAGAAGATGGTGCATTCT 1776
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1590 TGACTGCAATAGCTGCGGGAATGGTACACAGTTTGGCTCTAGCAGAAGATGGTGCATTGT 1649
Query 1777 TTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAGTTGCATTCGCTGCACGGTA 1836
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1650 TTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAGTTGCATTCGCTTCACGGTA 1709
Query 1837 AAACAGTTGTGAGCATTTCAGCGGGTAAATACTGGGCATCTGCTGTTACTAGTACAGGTG 1896
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 AAACAGTAGTGAGCATTTCAGCGGGTAAATACTGGGCATCTGCTGTTACTAGTACAGGTG 1769
Query 1897 AAGTTTACATGTGGGATGGGAAGAATGGTAAAGATATTGC-ACCATCTCTTTCTCGCCTC 1955
||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||
Sbjct 1770 AAGTTTACATGTGGGATGGGAAGGATGGTAAAGATAT-GCCACCGTCTCTTTCTCGCCTC 1828
Query 1956 CACAACTTGAAAAGGGCAACCACAGTTGCTGTTGGCGAAACTCATCTTCTGGTTGTTGGT 2015
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1829 CACAACTTGAAAAGGGGAACCACAGTTGCTGTTGGCGAAACACATCTTCTGGTTGTGGGT 1888
Query 2016 TCTCTGTATCATCCTGCATATGCTCCTATTGTGCTTAAGAAGTCTCAGACACTGCAAGCT 2075
||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 1889 TCTCTGTATCATCCTGCCTATGCTCCTACTGTGCTTAAGAAGTCTCAGACTGTGCAAGCG 1948
Query 2076 GAT-AAATGTAGGGAAGAAGAAAATGAAGAACTGGATGAGGGTTTTATGTTTGACGATGT 2134
||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1949 GATGAAA-GTAGGGAAGAAGAAAATGAAGAACTGGATGAGGGTTTTATGTTTGATGATGT 2007
Query 2135 GGAATCCGTGAACGTGTTGCAATCCGTGCAATACGATAATCCTAAGGAGAGGATAGTGCC 2194
|||||| ||||| || || |||||||||||| |||||||||| |||||||||| ||| ||
Sbjct 2008 GGAATCTGTGAATGTATTACAATCCGTGCAACACGATAATCCAAAGGAGAGGACAGTACC 2067
Query 2195 TAGCTTGAAAAGTTTATGCGAGAAGGTGGCCGCGGAGTGTATTGTAGAGCCACGAAATGC 2254
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2068 CAGCTTAAAAAGTTTATGCGAGAAGGTGGCAGCGGAGTGTATTGTAGAGCCACGAAATGC 2127
Query 2255 TATTCAATTGCTTGAAATTGCGGATTCGCTTGGAGCAGAGGATCTTAAGAAGTACTGTGA 2314
||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2128 TATTCAACTGCTTGAAATTGCGGATTCGCTTGGAGCAGAGGACCTCAAGAAGTACTGTGA 2187
Query 2315 GGACATTGTGATTCGAAACCTTGACTTTATTTTGACATTTTCTCCCCAATCTATTGCAAA 2374
|||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 2188 GGACATTGTGATCCGAAACCTTGACTTTATTTTGACGGTTTCTCCCCAATCAATTGCAAA 2247
Query 2375 TACATCACCTGATGTTCTTGCCAATCTTGAGAAATTACTGGATGACAGATCATCTGAAAC 2434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2248 TACATCACCTGATGTTCTTGCCAATCTTGAGAAATTACTGGATGACAGATCATCTGAAGC 2307
Query 2435 ATGGAGCTCCCGACCACTTCCAACCCCAACAGCCACATTTCCTGTTGTTATTGACAGTGA 2494
|||||||||||||||||||||||| ||||||||||||||||| ||||| || || |||||
Sbjct 2308 ATGGAGCTCCCGACCACTTCCAACACCAACAGCCACATTTCCAGTTGTGATAGATAGTGA 2367
Query 2495 AGAGGAGGAAAGTGAGAGCGACATTCTAAGAACTCGTGACAGCCATGTGAAACACTTTTC 2554
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2368 AGAGGAGGAAAGTGAGAGCGACATTCTAAGAACTCGTGACAACCATGTGAAACCCTTTTC 2427
Query 2555 CAGTATTGGTG--G----TACTCGAATGGATTCATTCTTGCAACCAGAAGATGAGCTGAC 2608
|||||||| || | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2428 CAGTATTGCTGACGGAAGTACTCGAATGGATTCATTCTTGCAACCAGAAGATGAGCTCAC 2487
Query 2609 TCAACACAATTCCAAAGAAGTCCGAGCTTTGAGGAAAAAGTTGCAACAAATTGAGATACT 2668
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2488 TTTACGCAATTCCAAAGAAGTCCGAGCTTTGAGGAAAAAGTTGCAACAAATTGAGATCCT 2547
Query 2669 TGAAGCAAAACAATCGAGAGGACAACTTCTTGATGGTCAGCAAATAGCAAAACTTCAAAA 2728
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2548 TGAAGCAAAACAATCCAGAGGACAACATCTTGATGGTCAGCAAATAGCAAAACTTCAAAA 2607
Query 2729 GAAACTAGATATCGAAAGTTCACTGGTAGAACTTGGTATTCCTGTGGAAGAGTTTCCAGA 2788
||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 2608 GAAACTAGATATCGAAAGTTCACTGGTAGAACTTGGTATTCCTTTTGAAGAGTCTCCAGA 2667
Query 2789 GGCAAAAGCAACAACAGCTTTACCGCTagaaggaaaggccaacaagaagggaaaaaagaa 2848
||||||| || ||||||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 2668 GGCAAAATCATCAACAGCTTTACCACTAGATGGAAAAGCCAACAAGAATGGAAAAAAGAA 2727
Query 2849 gaaaaaggGTAATCAGAGATTTGTACAAGTTGAGACATTCCCTGAATTTGGTGAAGTTAA 2908
|| |||||| || ||||||||| |||| |||||||||| |||||| ||||||||||||||
Sbjct 2728 GAGAAAGGGGAAACAGAGATTTTTACAGGTTGAGACATACCCTGATTTTGGTGAAGTTAA 2787
Query 2909 AGTGGAAATAGATACGATGCAAGACAAAGAAATTGAAGAAATCTGTGAAGCTATCAAGCC 2968
||||||||||||||| ||||| || ||||||||||| ||||| | |||||||||||||||
Sbjct 2788 AGTGGAAATAGATACAATGCAGGATAAAGAAATTGAGGAAATTTCTGAAGCTATCAAGCC 2847
Query 2969 AAAGGGTGGCAAAACCATGTTGGATACGACGATGATTAGTGGGTTCCCCAAAGAATCAGA 3028
||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 2848 AAAGGATGGCAAAACCATGCTGGATATGACGATGATTAGTGGGTTCCCCAAAGAATCAGA 2907
Query 3029 CTTTGTCTCACTCTCGCAAAAGAAAGATAATCCACCCGATTCGCCGAGAAGCAAGAAACT 3088
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 2908 CTTTGTCTCACTCTCGCAGAAGAAAGATAATCCACCCAATTCGCCGAGAAGCAAGAAACT 2967
Query 3089 TGCAACGGCAGCAAACAAGAAGAAGAACAGAAAGGGTGGGCTTTCCATGTTCTTGACTGG 3148
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2968 TGCAACGGCAGCTAACAAGAAGAAGAACAGAAAGGGTGGGCTTTCCATGTTCTTGACTGG 3027
Query 3149 TGCTCTTGATGATGTCCCTAAACCTGTTGTTGCTCCTCCACCAAGGCCTAAGATTGAAGG 3208
||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3028 TGCTCTTGATGATATTCCTAAACCTGTTGTTGCTCCTCCACCAAAACCTAAGATTGAAGG 3087
Query 3209 TCCTGTGTGGGGTGGGGCTAAGATTTCTAAAGGATTATCTTCCCTGCGGGATATTCAAGA 3268
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 3088 TCCTGTGTGGGGTGGAGCTAAGGTTTCTAAAGGATTATCTTCCCTCCGGGATATTCAAGA 3147
Query 3269 TGAACAAAGCAAGACCC-GCTCTCATGAACCTGTTAGGACTACTAAAAATCAGTCAGGGG 3327
||||||||||||||||| || |||||||||||||||||||||||| |||||| |
Sbjct 3148 TGAACAAAGCAAGACCCAGC-CTCATGAACCTGTTAGGACTACTAG------GTCAGGCG 3200
Query 3328 ATGATTCTCCTGGTAAAAGTGAAGGAAAGATATTACTGAGTTCCTTCTTGACTTCGAAGC 3387
|||||||| ||||||||| |||||| ||||||||||| |||||||||||||| |||||||
Sbjct 3201 ATGATTCTTCTGGTAAAACTGAAGGCAAGATATTACTTAGTTCCTTCTTGACATCGAAGC 3260
Query 3388 CGATTCCGATGGAACCAGCCAAAAGTTTGCAGCAATCTGATGTGGAAAAAGGAACTCCTC 3447
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3261 CGATTCCAATGGAACCAGCCAAAAGTTTGCAGCAGTCTGATGTGGAAAAAGGAACTCCTC 3320
Query 3448 CTTGGGCTTCCTCTGAAACTCCGCGTAAACTGTCTCGACCTTCTCTCAGAGATATCCAGA 3507
|||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 3321 CTTGGGCTTCCTCTGAAACTCCTCGTAACCTGTCCCGACCTTCTCTTAGAGATATCCAGA 3380
Query 3508 TGCAGGAGGTGAAGAAGCAACAGTCTCTGTCCCACAGTCCAAAGACAAAAACATCAGGCT 3567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3381 TGCAGGAGGTGAAGAAGCAACAGTCTCTGTCCCACAGTCCAAAGACAAAAACATCAGGCT 3440
Query 3568 TCACAGTCGCAACCGGGCAAGGATCTCCATCAGATTCGCCTGGAACTAATCGCTGGTTCA 3627
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3441 TCACAGTCGCAACCGGGCAAGGATCTCCATCAGATTCGCCTGGAACAAATCGCTGGTTCA 3500
Query 3628 AACCAGAGATAGATGCTCCATCAGCAATCCGATCAATCCAGATAGAAGAAAAAGCCATGA 3687
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3501 AACCAGAGATAGATGCTCCATCAGCAATACGATCAATCCAGATAGAAGAAAAAGCCATGA 3560
Query 3688 AGGATCTCCGCCGCTTCTACAGTAGCGTGAAG 3719
||||||| || ||||||||||| |||||||||
Sbjct 3561 AGGATCTGCGACGCTTCTACAGCAGCGTGAAG 3592
Score = 313 bits (169), Expect = 8e-84
Identities = 197/210 (94%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 3718 AGATGATGTCTCCACTGTTCATTGGGTCTCCTCTTAACTGGTCAGCCAttttttttCTCT 3777
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |
Sbjct 3689 AGATGATGTCTCCACTGTACATTGGGTCTCCTCTTACCTGGTCAGCCATTTTTTTT-T-T 3746
Query 3778 TTCTTTCAATGTGTTAGTCTTTGGTAGTAGCTGTCAAAGTAATACTCATGCTTATGTACA 3837
|||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 3747 TTCTTTCAATTTGTTAGTCTTTGGTAGTAGCTGTCAAAGGAATACCCATGCTTATGTACA 3806
Query 3838 TCACTGGTGTACATGAAGCTCTTTAGTAGTCTTCACAAA-CCATTTTAGATGTATATATT 3896
||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 3807 TCACTGGTGTACACGAAGCTCTTTAGTAGTCTTCA-AAAGCCATTTTAGATGTACATATT 3865
Query 3897 TCGTAATAATAAGAAAAAGCTTATATGATT 3926
||||||||||||||||| ||||| ||||||
Sbjct 3866 TCGTAATAATAAGAAAACGCTTAGATGATT 3895
Score = 300 bits (162), Expect = 6e-80
Identities = 212/234 (91%), Gaps = 12/234 (5%)
Strand=Plus/Plus
Query 13 CAGAAACTTTTTTATACGCCTCTGTTTCTTATGGGGAAGAGGGTATATTCTCTGTTTTGA 72
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1 CAGAAACTTTTTTATACGCCTCTGTTTCTCAT--GG-AGAGGGTATATTCTCTGTTTTGA 57
Query 73 TTCGCTTCTGTCTTAACACATTGAAATTTTCCATAGAAGATTCCATTGTGctcttttaat 132
||||||||| | | ||||||||||| ||||||||||||||||||||||||||| | | ||
Sbjct 58 TTCGCTTCT-TATGAACACATTGAATTTTTCCATAGAAGATTCCATTGTGCTCATAT-AT 115
Query 133 cctcttctctttctctctgttttaaatacctgtctttaatcgcttctctctatctctctc 192
| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 116 -C-C-TCTCTTTCTCTCTGTTTTAAATACCTGTCTTTAATCGCTTCTCTCT--CTCTCTC 170
Query 193 tcttGTTAAATCTCATCGGAGTTCAATTTCAGGACTCTCGGCGCTCTTATGAAG 246
| | ||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 171 T-T-GTTAAATATCATCGGAGTTCAATTTCAGTTCTCTCGGCTCTCTTATGAAG 222
> Ahg952171 jgi|Araly1|952171|scaffold_43500001.1
Length=1105
Score = 145 bits (78), Expect = 3e-33
Identities = 88/93 (95%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 3423 TCTGATGTGGAAAAAGGAACTCCTCCTTGGGCTTCCTCTGAAACTCCGCGTAAACTGTCT 3482
|||||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 116 TCTGATGTGGGAAAACGAACTCCTCCTTGGGCTTCCTCTGAAACTCCTCGTAACCTGTCT 175
Query 3483 CGACCTTCTCTCAGAGATATCCAGATGCAGGAG 3515
||||||||||| |||||||||||||||||||||
Sbjct 176 CGACCTTCTCTTAGAGATATCCAGATGCAGGAG 208
Score = 134 bits (72), Expect = 6e-30
Identities = 82/87 (94%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 3633 GAGATAGATGCTCCATCAGCAATCCGATCAATCCAGATAGAAGAAAAAGCCATGAAGGAT 3692
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 206 GAGATAGATGCTCCATCAGCAATACGATCAATCCAGATAGAAGAAAAAGCCATGAAGGAT 265
Query 3693 CTCCGCCGCTTCTACAGTAGCGTGAAG 3719
|| ||||| ||||||| |||||||||
Sbjct 266 CTGTGCCGCATCTACAGCAGCGTGAAG 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148614822565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5