BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G03800.1 Length=1035 Score E Sequences producing significant alignments: (Bits) Value Ahg317260 jgi|Araly1|317260|fgenesh1_pm.C_scaffold_3000276 1607 0.0 > Ahg317260 jgi|Araly1|317260|fgenesh1_pm.C_scaffold_3000276 Length=921 Score = 1607 bits (870), Expect = 0.0 Identities = 904/921 (98%), Gaps = 0/921 (0%) Strand=Plus/Plus Query 115 ATGAACGACCTCTTAAAGGGTTCGTTAGAGTTCTCCAGGGATCGCTCTAATAGAAGCGAT 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAACGACCTCTTAAAGGGTTCGTTAGAGTTCTCCAGGGATCGCTCTAATAGAAGCGAT 60 Query 175 ATTGAGTCAGGACATGGCCCTGGTAACTCTGGAGATCTCGGGCTCTCTGGTTTCTTCAAA 234 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTGAGTCAGGACATGGCCCAGGTAACTCTGGAGATCTCGGGCTCTCTGGTTTCTTCAAA 120 Query 235 AAGGTCCAGGAAATCGAAAAGCAATATGAGAAGCTTGACAAGCATCTCAACAAGCTTCAG 294 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 AAGGTCCAAGAAATCGAAAAGCAATATGAGAAGCTTGATAAGCATCTCAACAAGCTTCAG 180 Query 295 GGGGCACATGAGGAGACTAAAGCCGTCACCAAGGCTCCTGCAATGAAATCAATCAAGCAA 354 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || Sbjct 181 GGGGCACATGAGGAGACTAAAGCCGTCACTAAGGCTCCTGCGATGAAATCAATCAAACAG 240 Query 355 AGGATGGAGAGAGATGTTGATGAAGTGGGAAGAATTTCTCGTTTCATCAAAGGAAAGATC 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGGATGGAGAGAGATGTTGATGAAGTGGGAAGAATTTCTCGTTTCATCAAAGGAAAGATC 300 Query 415 GAGGAACTGGACCGAGAGAATCTGGAGAACCGGACTAAACCGGGTTGTGGGAAAGGAACA 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GAGGAACTGGACCGAGAGAATCTGGAGAACCGGACTAAACCGGGTTGTGGGAAAGGAACA 360 Query 475 GGTGTAGACAGAACAAGAACAGCCACAACTATTGCGGTGAAGAAGAAATTTAAGGACAAG 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GGTGTAGACAGAACAAGAACAGCCACAACTATTGCGGTGAAGAAGAAATTTAAGGACAAG 420 Query 535 ATATCTGAATTCCAAACTCTAAGACAAAACATTCAACAAGAATACAGAGAAGTTGTAGAG 594 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 421 ATATCTGAATTCCAAACTCTAAGACAGAACATTCAACAAGAATACAGAGAAGTTGTAGAG 480 Query 595 AGGCGTGTGTTTACAGTGACTGGCCAACGAGCTGATGAAGAGGCAATTGATAGATTGATT 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGGCGTGTGTTTACAGTGACTGGCCAACGAGCTGATGAAGAGGCAATTGATAGATTGATT 540 Query 655 GAAACTGGAGACAGTGAGCAAATTTTCCAGAAAGCAATCAGGGAGCAAGGACGAGGACAG 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GAAACTGGAGACAGTGAGCAAATTTTCCAGAAAGCAATCAGGGAGCAAGGACGAGGACAG 600 Query 715 ATAATGGACACACTGGCTGAGATTCAGGAACGCCATGACGCTGTCAGAGATTTAGAGAAG 774 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 601 ATAATGGATACACTGGCTGAGATACAGGAACGCCATGACGCTGTCAGAGATTTAGAGAAG 660 Query 775 AAACTCCTTGACCTGCAACAGGTGTTTCTCGATATGGCCGTGCTGGTGGATGCACAGGGA 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AAACTCCTTGACCTGCAACAGGTGTTTCTCGATATGGCCGTGCTGGTGGATGCACAGGGA 720 Query 835 GAGATGTTAGACAACATAGAGAATATGGTCTCAAGTGCTGTGGATCATGTTCAATCCGGA 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 721 GAGATGTTAGACAACATAGAGAATATGGTCTCAAGTGCTGTGGATCATGTTCAATCTGGA 780 Query 895 AACAATCAACTAACAAAGGCAGTAAAAAGCCAGAAAAGTTCAAGGAAATGGATGTGCATT 954 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AACAATCACCTAACAAAGGCAGTAAAAAGCCAGAAAAGTTCAAGGAAATGGATGTGCATT 840 Query 955 GCCATCCTTATCCTTCTTATCATTATTATCATTACTGTCATCTCTGTTCTCAAACCATGG 1014 |||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 841 GCCATCCTTATCCTACTTATCATCATCATCATTACTGTTATCTCTGTTCTCAAACCATGG 900 Query 1015 ACACAGAAAAATGGTGCCTAA 1035 ||||||||||||||||||||| Sbjct 901 ACACAGAAAAATGGTGCCTAA 921 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38504146170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5