BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03800.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317260 jgi|Araly1|317260|fgenesh1_pm.C_scaffold_3000276 1607 0.0
> Ahg317260 jgi|Araly1|317260|fgenesh1_pm.C_scaffold_3000276
Length=921
Score = 1607 bits (870), Expect = 0.0
Identities = 904/921 (98%), Gaps = 0/921 (0%)
Strand=Plus/Plus
Query 115 ATGAACGACCTCTTAAAGGGTTCGTTAGAGTTCTCCAGGGATCGCTCTAATAGAAGCGAT 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACGACCTCTTAAAGGGTTCGTTAGAGTTCTCCAGGGATCGCTCTAATAGAAGCGAT 60
Query 175 ATTGAGTCAGGACATGGCCCTGGTAACTCTGGAGATCTCGGGCTCTCTGGTTTCTTCAAA 234
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGAGTCAGGACATGGCCCAGGTAACTCTGGAGATCTCGGGCTCTCTGGTTTCTTCAAA 120
Query 235 AAGGTCCAGGAAATCGAAAAGCAATATGAGAAGCTTGACAAGCATCTCAACAAGCTTCAG 294
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AAGGTCCAAGAAATCGAAAAGCAATATGAGAAGCTTGATAAGCATCTCAACAAGCTTCAG 180
Query 295 GGGGCACATGAGGAGACTAAAGCCGTCACCAAGGCTCCTGCAATGAAATCAATCAAGCAA 354
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 181 GGGGCACATGAGGAGACTAAAGCCGTCACTAAGGCTCCTGCGATGAAATCAATCAAACAG 240
Query 355 AGGATGGAGAGAGATGTTGATGAAGTGGGAAGAATTTCTCGTTTCATCAAAGGAAAGATC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGATGGAGAGAGATGTTGATGAAGTGGGAAGAATTTCTCGTTTCATCAAAGGAAAGATC 300
Query 415 GAGGAACTGGACCGAGAGAATCTGGAGAACCGGACTAAACCGGGTTGTGGGAAAGGAACA 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGGAACTGGACCGAGAGAATCTGGAGAACCGGACTAAACCGGGTTGTGGGAAAGGAACA 360
Query 475 GGTGTAGACAGAACAAGAACAGCCACAACTATTGCGGTGAAGAAGAAATTTAAGGACAAG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGTGTAGACAGAACAAGAACAGCCACAACTATTGCGGTGAAGAAGAAATTTAAGGACAAG 420
Query 535 ATATCTGAATTCCAAACTCTAAGACAAAACATTCAACAAGAATACAGAGAAGTTGTAGAG 594
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 ATATCTGAATTCCAAACTCTAAGACAGAACATTCAACAAGAATACAGAGAAGTTGTAGAG 480
Query 595 AGGCGTGTGTTTACAGTGACTGGCCAACGAGCTGATGAAGAGGCAATTGATAGATTGATT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGCGTGTGTTTACAGTGACTGGCCAACGAGCTGATGAAGAGGCAATTGATAGATTGATT 540
Query 655 GAAACTGGAGACAGTGAGCAAATTTTCCAGAAAGCAATCAGGGAGCAAGGACGAGGACAG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAACTGGAGACAGTGAGCAAATTTTCCAGAAAGCAATCAGGGAGCAAGGACGAGGACAG 600
Query 715 ATAATGGACACACTGGCTGAGATTCAGGAACGCCATGACGCTGTCAGAGATTTAGAGAAG 774
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 ATAATGGATACACTGGCTGAGATACAGGAACGCCATGACGCTGTCAGAGATTTAGAGAAG 660
Query 775 AAACTCCTTGACCTGCAACAGGTGTTTCTCGATATGGCCGTGCTGGTGGATGCACAGGGA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAACTCCTTGACCTGCAACAGGTGTTTCTCGATATGGCCGTGCTGGTGGATGCACAGGGA 720
Query 835 GAGATGTTAGACAACATAGAGAATATGGTCTCAAGTGCTGTGGATCATGTTCAATCCGGA 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GAGATGTTAGACAACATAGAGAATATGGTCTCAAGTGCTGTGGATCATGTTCAATCTGGA 780
Query 895 AACAATCAACTAACAAAGGCAGTAAAAAGCCAGAAAAGTTCAAGGAAATGGATGTGCATT 954
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AACAATCACCTAACAAAGGCAGTAAAAAGCCAGAAAAGTTCAAGGAAATGGATGTGCATT 840
Query 955 GCCATCCTTATCCTTCTTATCATTATTATCATTACTGTCATCTCTGTTCTCAAACCATGG 1014
|||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 841 GCCATCCTTATCCTACTTATCATCATCATCATTACTGTTATCTCTGTTCTCAAACCATGG 900
Query 1015 ACACAGAAAAATGGTGCCTAA 1035
|||||||||||||||||||||
Sbjct 901 ACACAGAAAAATGGTGCCTAA 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5