BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03820.1
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927913 jgi|Araly1|927913|scaffold_300370.1 466 4e-131
Ahg477637 jgi|Araly1|477637|fgenesh2_kg.3__338__AT3G03840.1 318 1e-86
Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1 195 2e-49
Ahg941320 jgi|Araly1|941320|scaffold_601864.1 158 3e-38
> Ahg927913 jgi|Araly1|927913|scaffold_300370.1
Length=336
Score = 466 bits (252), Expect = 4e-131
Identities = 278/291 (96%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGATTCTTGGTGGCTCAGTAGCAGGA 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 21 ATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGATTATTGGTGGCTCAGTAGCAGGA 80
Query 61 ACGAGGAAAGAAACTTCAGCACCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCAG 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 81 GCGAGGAAAGAAACTTCAGCGCCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCAG 140
Query 121 AGGAAGAAGCAGAGACACCTTGTGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAGCT 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 141 AAGAAGAAGCAGAGACACCTTGTGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAGAT 200
Query 181 CTACTCATCAAAGCTGAAGAAGAGTTCGGATTCAATCATCCGATGGGCGGCTTGACGATC 240
|| ||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 201 CTTCTCATTAAGGCTGAAGAAGAGTTCGGATTCAACCATCCGATGGGCGGTTTGACGATC 260
Query 241 CCTTGTCCTGAAGATACTTTCCTCACTGTAACGTCTCAGATCCAAGGATGA 291
||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 261 CCTTGTCCTGAAGATACCTTCCTCACTGTAACTTCTCAGATCCAAGGGTGA 311
> Ahg477637 jgi|Araly1|477637|fgenesh2_kg.3__338__AT3G03840.1
Length=596
Score = 318 bits (172), Expect = 1e-86
Identities = 256/295 (87%), Gaps = 11/295 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGAT-TCTTGGTGGCTCAGTAGCAGG 59
||||||||||| ||| ||||| | | |||||||||||| | |||| |||||| |||| ||
Sbjct 151 ATGGCTTTGGTGAGAAGTTTCTTTGTTGCAAAGAAGATAT-TTGGAGGCTCATTAGCCGG 209
Query 60 AACGAGGAAAGAAACTTCAGCACCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCA 119
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 210 AACGAGGAAAGAAACTTCAGCACCAAAAGGGTTTCTTGCAGTATACGTAGGGGAGAGCCA 269
Query 120 GAGGAAGAAGCAGAGACACCTT-GTGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAG 178
||||||| | | ||| || || ||||| ||||||||||||| ||||| ||||||||||
Sbjct 270 GAGGAAGCA--A-AGATAC-TTAGTGCCAGTCTCATACTTGAGGCAGCCATTGTTTCAAG 325
Query 179 CTCTACTCA-TCAAAGCTGAAGAAGAGTTCGGAT-TCAATCATCCGATGGGCGGCTTGAC 236
||| |||| | ||| | || ||||||||||||| | | |||||||||||||||||||||
Sbjct 326 ATCTTCTCAGT-AAATCCGAGGAAGAGTTCGGATATGA-TCATCCGATGGGCGGCTTGAC 383
Query 237 GATCCCTTGTCCTGAAGATACTTTCCTCACTGTAACGTCTCAGATCCAAGGATGA 291
|||||| |||||||||||||| |||||||| ||||| |||| |||||||||||||
Sbjct 384 GATCCCGTGTCCTGAAGATACCTTCCTCACAGTAACTTCTCGGATCCAAGGATGA 438
> Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1
Length=420
Score = 195 bits (105), Expect = 2e-49
Identities = 180/215 (84%), Gaps = 10/215 (5%)
Strand=Plus/Plus
Query 79 GCACCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCAGAGGAAGAAGCAGAGACAC 138
||||||||||||||||||||||||||||| || |||||||||| | |||| ||| |
Sbjct 74 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGA--A-GAAG-AGATAT-- 127
Query 139 CTTG-TGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAGCTCTACTCA-TCAAAGCTG 196
||| ||||| |||||||||||| ||| |||| ||||||||||| |||| | ||| | |
Sbjct 128 -TTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGT-AAATCCG 185
Query 197 AAGAAGAGTTCGGATTCAATCATCCGATGGGCGGCTTGACGATCCCTTGTCCTGAAGATA 256
| |||||||| |||||| ||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 186 AGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGATA 245
Query 257 CTTTCCTCACTGTAACGTCTCAGATCCAAGGATGA 291
| ||| ||||||| || |||| | ||||| |||||
Sbjct 246 CCTTCATCACTGTGACTTCTCGGCTCCAATGATGA 280
> Ahg941320 jgi|Araly1|941320|scaffold_601864.1
Length=314
Score = 158 bits (85), Expect = 3e-38
Identities = 172/213 (81%), Gaps = 10/213 (5%)
Strand=Plus/Plus
Query 79 GCACCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCAGAGGAAGAAGCAGAGACAC 138
||||||||||||||||||||||||||||| || ||||||| || | |||| ||| |
Sbjct 91 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGA--A-GAAG-AGATAT-- 144
Query 139 CTTG-TGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAGCTCTACTCA-TCAAAGCTG 196
||| |||| ||||||| || ||||| || | ||| |||||||| |||| | ||| | |
Sbjct 145 -TTGGTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGT-AAATCCG 202
Query 197 AAGAAGAGTTCGGATTCAATCATCCGATGGGCGGCTTGACGATCCCTTGTCCTGAAGATA 256
| |||||||| || ||| ||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 203 AGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGATA 262
Query 257 CTTTCCTCACTGTAACGTCTCAGATCCAAGGAT 289
| ||| ||| ||| || |||| | ||||| |||
Sbjct 263 CCTTCATCAATGTGACTTCTCGGCTCCAATGAT 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10187542263
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5