BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03826.1

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927914 jgi|Araly1|927914|scaffold_300371.1                        296    4e-80


> Ahg927914 jgi|Araly1|927914|scaffold_300371.1
Length=305

 Score =  296 bits (160),  Expect = 4e-80
 Identities = 190/204 (93%), Gaps = 3/204 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGTGTGCTTTCCTTATCATTTTAGTTGTTATATCCGTGATGAGTATCGTAACAATT  60
            |||||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct  37   ATGAAGCGTGCTTTCCTTATCTTTTTAGTTGTTATATCCGCGATGGGTATCGTAACAATT  96

Query  61   CAAAATGTTGAGGCAAAACGTTTATTACGTGAAGAAACTCCGCAAATTATGTTGCATCAT  120
            |||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||
Sbjct  97   CAAAATGTTGAGGCAAAACGTTTATTACATGAAGAAATTCCTCAAATGATGTTGCATCAT  156

Query  121  GAAGTTTCAACGCAAGTTATTAGACCACAAAGT-TT-T-CACTGCGAAAAAAGGTGTGGT  177
            ||||||||||||||||||||||||||||||||| || | |||||||||||| ||||| ||
Sbjct  157  GAAGTTTCAACGCAAGTTATTAGACCACAAAGTCTTCTTCACTGCGAAAAAGGGTGTCGT  216

Query  178  GTGAAATGTGTTCCAAATCCATTT  201
            |||||||||||||| |||||||||
Sbjct  217  GTGAAATGTGTTCCCAATCCATTT  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7828593505


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5