BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03828.1
Length=431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317262 jgi|Araly1|317262|fgenesh1_pm.C_scaffold_3000278 300 6e-81
> Ahg317262 jgi|Araly1|317262|fgenesh1_pm.C_scaffold_3000278
Length=243
Score = 300 bits (162), Expect = 6e-81
Identities = 222/249 (89%), Gaps = 12/249 (5%)
Strand=Plus/Plus
Query 67 GGTGAAAAATGTCAATGAAGTTTGTTTTCGTTCTGTTCTTAGCTGTTACATCAGTGATGA 126
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3 GGTG-AAGATGTCAATGAAGTTTGTTTTCGTTCTTTTCTTAGCTGTTACATCAGTGATGA 61
Query 127 ATATTGTAACAGTTCAAAATGTTGAAGGGAAACGTTTATTACCTGAAGAAACTTCTCAAT 186
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 ATATTGGAACAGTTCAAAATGTTGAAGGGAAACGTTTATTACCTGAAGAAACTTCTCAAT 121
Query 187 TATCTGTGTTGGATCATGAAGCTTCACCATCAGTT-GTCATACCACAAGG--TCAACAAT 243
| | |||||||||||||||||||||||||| ||| |||||||||||||| || || |
Sbjct 122 T-T--GTGTTGGATCATGAAGCTTCACCATC-GTTTGTCATACCACAAGGAATCCAC--T 175
Query 244 GCCCGAAACCGTGTCATGTGCAATGTTATTTTCGCGAGATCGG-GTCTTTTTGTGTTTGT 302
|| |||| ||||||||| ||||||||| ||||||||| || || | ||||||||||
Sbjct 176 GCGAGAAAAAGTGTCATGTCCAATGTTATATTCGCGAGAG-GGCGTATGGTTGTGTTTGT 234
Query 303 CTATGCTAA 311
||||||||
Sbjct 235 TTATGCTAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15529324723
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5