BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G03830.1

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477636 jgi|Araly1|477636|fgenesh2_kg.3__337__AT3G03830.1          357    4e-98


> Ahg477636 jgi|Araly1|477636|fgenesh2_kg.3__337__AT3G03830.1
Length=425

 Score =  357 bits (193),  Expect = 4e-98
 Identities = 249/273 (91%), Gaps = 15/273 (5%)
 Strand=Plus/Plus

Query  1    ATCATCAACCACAAGCAATCC--A----GAA---CTTTAGTCCTTCCTTTGATCCCATAC  51
            |||||||||||||||||||||  |    |||   ||||||||||||||||| || |||||
Sbjct  1    ATCATCAACCACAAGCAATCCAGATCTTGAATCTCTTTAGTCCTTCCTTTGCTCTCATAC  60

Query  52   ATATTCAGAAGCTTCGAGAATCAAACTTCT--AGACAAGAAAATGGCTTTGGTGAGAAGT  109
            ||||||||||||||| |||||||||  |||  ||| |||||||||||||| |||||||||
Sbjct  61   ATATTCAGAAGCTTCAAGAATCAAA--TCTGGAGATAAGAAAATGGCTTTAGTGAGAAGT  118

Query  110  ATCTTCAGTGCAAAGAAGATTCTTGGCGGCTCCTTAGCAAGAACGAGCAAAGCACCAAAA  169
            |||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct  119  ATCTTCAGTGCAAAGAAGATTCTTGGTGGCTCTTTAGCAAGTACAAGCAAAGCACCAAAA  178

Query  170  GGTTTTCTTGCGGTGTACGTCGGTGAGAACCAAGAGAAGAAGCAGAGATACTTTGTACCA  229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  GGTTTTCTTGCGGTGTACGTCGGTGAGAACCAAGAGAAGAAGCAGAGATACTTTGTACCA  238

Query  230  GTCTCATACTTGAAGC-AGCCTTCATTTCAGGC  261
            ||||||||||||| || ||||||||||||||||
Sbjct  239  GTCTCATACTTGA-GCCAGCCTTCATTTCAGGC  270


 Score =  217 bits (117),  Expect = 8e-56
 Identities = 134/142 (94%), Gaps = 2/142 (1%)
 Strand=Plus/Plus

Query  350  ATAACTTCTAGGATCCAATGATGATCATCAGTAGGAAAAACAATAA-TTTTCTTGTAAAT  408
            ||||||||| |||||||||||||| | |||||||||||||||| || |||||||||||||
Sbjct  284  ATAACTTCTCGGATCCAATGATGACCGTCAGTAGGAAAAACAACAATTTTTCTTGTAAAT  343

Query  409  AGATTGACAAATTTTCATCTTATTAACCAAAAGATTTGTTCCAAAC-ATATGAAAGCCAG  467
            |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct  344  AGATTGACAAATTTTCATCTTATTAACCAAAAGATTTGTTCCAAAGGATATGAAAGCCAG  403

Query  468  TTTTGTGTAAGAAACAATGCTA  489
            ||||||||||||||| ||||||
Sbjct  404  TTTTGTGTAAGAAACGATGCTA  425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18352838309


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5