BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03840.1
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477637 jgi|Araly1|477637|fgenesh2_kg.3__338__AT3G03840.1 573 6e-163
Ahg927913 jgi|Araly1|927913|scaffold_300370.1 351 3e-96
Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1 261 5e-69
Ahg941320 jgi|Araly1|941320|scaffold_601864.1 224 7e-58
> Ahg477637 jgi|Araly1|477637|fgenesh2_kg.3__338__AT3G03840.1
Length=596
Score = 573 bits (310), Expect = 6e-163
Identities = 382/416 (92%), Gaps = 8/416 (2%)
Strand=Plus/Plus
Query 98 GACCCAAAACAGAACAACATCTTCAT-ACCTATTAACAATAAGCAATCTAAGAACTCTAA 156
|||||||||||||||||||| ||||| ||| || ||||||||||||||||| ||||||||
Sbjct 60 GACCCAAAACAGAACAACATTTTCATAACC-ATCAACAATAAGCAATCTAAAAACTCTAA 118
Query 157 GCTTC--AAAAGATCAAGACTTATAAACAAAAATGGCTTTGGTGAGAAGTCTCTTTGTTT 214
||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 119 GCTTCAAAAAAAATCAGGACTTATAAACAAAAATGGCTTTGGTGAGAAGTTTCTTTGTTG 178
Query 215 CAAACAAGATACTTGGAGGCTCATTAGCAGGAATGAGAAAATCAACTTCAGCACCAAAAG 274
|||| |||||| |||||||||||||||| |||| ||| ||| |||||||||||||||||
Sbjct 179 CAAAGAAGATATTTGGAGGCTCATTAGCCGGAACGAGGAAAGAAACTTCAGCACCAAAAG 238
Query 275 GGTTTCTTGCAGTGTACGTAGGGGAGAGCCAGAAGAAGCAGAGATACTTAGTGCTAGTCT 334
||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 239 GGTTTCTTGCAGTATACGTAGGGGAGAGCCAGAGGAAGCAAAGATACTTAGTGCCAGTCT 298
Query 335 CATACTTGAGCCAGCCATTGTTTCAAGATCTTCTCAGTAAATCCGAGGAAGAGTTCGGAT 394
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CATACTTGAGGCAGCCATTGTTTCAAGATCTTCTCAGTAAATCCGAGGAAGAGTTCGGAT 358
Query 395 TTGATCATCCGATGGGGGGCTTGACGATCCCTTGTCCTGAAGATACCTTCCTCACTGTAA 454
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 359 ATGATCATCCGATGGGCGGCTTGACGATCCCGTGTCCTGAAGATACCTTCCTCACAGTAA 418
Query 455 CTTCTCGGATCCAAGGATGATCATCATCTGAAG-AAAAA--CTTAACActtttctt 507
||||||||||||||||||||| ||||| | ||| ||||| || ||||||||||||
Sbjct 419 CTTCTCGGATCCAAGGATGATGATCAT-TAAAGGAAAAAAACTAAACACTTTTCTT 473
Score = 126 bits (68), Expect = 2e-28
Identities = 76/80 (95%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 640 TATGGAATCAAACAAAAGATCCAGACAGATTTCTAAGTTCTGTTTATATGATGTGTTTAT 699
||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct 516 TATGGAATCAAACAAAAGATCCAGAGAGATTTCTAACTTTTGTTTATATGATGTGTTTAT 575
Query 700 CAACAGTTATATACTATAAA 719
|||||||||||||||| |||
Sbjct 576 CAACAGTTATATACTAAAAA 595
Score = 104 bits (56), Expect = 9e-22
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGCAGACAGAAGCATGTGAAACTCTCAATTCATATACGTCCCCACAGTTTTCAAATATC 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 GGCAGACAGAAGCATGTGAAACTCTCAATTCATATACGTCCCCACAGTTTTCAACTATC 59
> Ahg927913 jgi|Araly1|927913|scaffold_300370.1
Length=336
Score = 351 bits (190), Expect = 3e-96
Identities = 280/323 (87%), Gaps = 8/323 (2%)
Strand=Plus/Plus
Query 179 AAACAAAAATGGCTTTGGTGAGAAGTCTCTTTGTTTCAAACAAGA-TACTTGGAGGCTCA 237
||||||||||||||||||| ||| || || | | | |||| |||| || |||| ||||||
Sbjct 13 AAACAAAAATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGATTA-TTGGTGGCTCA 71
Query 238 TTAGCAGGAATGAGAAAATCAACTTCAGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGG 297
|||||||| ||| ||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 72 GTAGCAGGAGCGAGGAAAGAAACTTCAGCGCCAAAAGGGTTTCTTGCAGTGTACGTCGGT 131
Query 298 GAGAGCC---AGAAGAAGCAGAGATA-CTTAGTGCTAGTCTCATACTTGAGCCAGCCATT 353
||||||| |||||||||||||| | ||| |||| ||||||||||||| |||||| ||
Sbjct 132 GAGAGCCAGAAGAAGAAGCAGAGACACCTT-GTGCCGGTCTCATACTTGAACCAGCCTTT 190
Query 354 GTTTCAAGATCTTCTCAGTAAATCCGAGGAAGAGTTCGGATTTGATCATCCGATGGGGGG 413
||||||||||||||||| ||| | || |||||||||||||| | ||||||||||| ||
Sbjct 191 GTTTCAAGATCTTCTCATTAAGGCTGAAGAAGAGTTCGGATTCAACCATCCGATGGGCGG 250
Query 414 CTTGACGATCCCTTGTCCTGAAGATACCTTCCTCACTGTAACTTCTCGGATCCAAGGATG 473
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 251 TTTGACGATCCCTTGTCCTGAAGATACCTTCCTCACTGTAACTTCTCAGATCCAAGGGTG 310
Query 474 ATCATCATCTGAAGAAAAA-CTT 495
||||||||||||||||||| |||
Sbjct 311 ATCATCATCTGAAGAAAAAGCTT 333
> Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1
Length=420
Score = 261 bits (141), Expect = 5e-69
Identities = 193/217 (89%), Gaps = 7/217 (3%)
Strand=Plus/Plus
Query 265 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGGGAGAGCCAGAAGAAGCAGAGATACTTA 324
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||
Sbjct 74 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAG-A--AGAGATATTTG 130
Query 325 GTGCTAG-TCTCATACTTGAGCCAGCCATT-GTTTCAAGATCTTCTCAGTAAATCCGAGG 382
|||| | |||||||||||||||| || || ||||||| ||||||||||||||||||||
Sbjct 131 GTGC-CGCTCTCATACTTGAGCCAACC-TTCATTTCAAGCTCTTCTCAGTAAATCCGAGG 188
Query 383 AAGAGTTCGGATTTGATCATCCGATGGGGGGCTTGACGATCCCTTGTCCTGAAGATACCT 442
||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 189 AAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGATACCT 248
Query 443 TCCTCACTGTAACTTCTCGGATCCAAGGATGATCATC 479
|| ||||||| ||||||||| ||||| |||||| |||
Sbjct 249 TCATCACTGTGACTTCTCGGCTCCAATGATGATTATC 285
> Ahg941320 jgi|Araly1|941320|scaffold_601864.1
Length=314
Score = 224 bits (121), Expect = 7e-58
Identities = 183/213 (86%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 265 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGGGAGAGCCAGAAGAAGCAGAGATACTTA 324
|||||||||||||||||||||||||||||||| ||||||| ||||||| ||| || ||
Sbjct 91 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGAAGAAG-AGATAT--TTG 147
Query 325 GTGCTAGTCTCATACTTGAGCCAGCCATTGTTTCAAGATCTTCTCAGTAAATCCGAGGAA 384
|||| | ||||||| || | ||| || | ||| |||| ||| ||||||||||||||||||
Sbjct 148 GTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGTAAATCCGAGGAA 207
Query 385 GAGTTCGGATTTGATCATCCGATGGGGGGCTTGACGATCCCTTGTCCTGAAGATACCTTC 444
||||| || || |||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 208 GAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGATACCTTC 267
Query 445 CTCACTGTAACTTCTCGGATCCAAGGAT-GATC 476
||| ||| ||||||||| ||||| ||| ||||
Sbjct 268 ATCAATGTGACTTCTCGGCTCCAATGATTGATC 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26762287734
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5