BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03860.1
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477638 jgi|Araly1|477638|fgenesh2_kg.3__339__AT3G03860.1 1797 0.0
Ahg941333 jgi|Araly1|941333|scaffold_601877.1 460 1e-128
Ahg925874 jgi|Araly1|925874|scaffold_201435.1 278 1e-73
Ahg922044 jgi|Araly1|922044|scaffold_103325.1 198 9e-50
> Ahg477638 jgi|Araly1|477638|fgenesh2_kg.3__339__AT3G03860.1
Length=1387
Score = 1797 bits (973), Expect = 0.0
Identities = 1107/1170 (95%), Gaps = 15/1170 (1%)
Strand=Plus/Plus
Query 332 AGTTTCATGGATTCTCGAGTTTCGATTCTCTTCGTCTGTGCAATAGCCGTGTCATGCTTT 391
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 222 AGTTTCATGGATTCTCGAGTTTCGATTCTCTTCGTCTGTGCGATAGCTGTGTCATGCTTT 281
Query 392 ACGTCTGGGTCTGCTTCATCACC-AGTGGACTTTTCCGTTTGCAATTACGAATTCGAGCT 450
||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 282 ACGTCCGGGTCCGCTTCATC-CCGAGTGGACTTTTCCGTTTGCAATTACGAATTCGAGGT 340
Query 451 GTTTCGATTCGATTTAGAGGCCAAATGTCCTCCTTCTCTGTATCCAACTCCTCCTATTGA 510
||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||
Sbjct 341 CTTTCGATTCGATTTAGAAGCCAAATGTCCTCCTTCTCTCTATCCAAGTCCTCCTATTGA 400
Query 511 GGTAGATGGAGACTCACTAGACAGGCTAATGGCTTCACAA-CATGGAAATGCTTATATGT 569
||||||||||| ||| || |||||| |||||| |||| || |||||||||||||||||||
Sbjct 401 GGTAGATGGAGGCTCTCTGGACAGGGTAATGGATTCA-AATCATGGAAATGCTTATATGT 459
Query 570 CTGTACTCTTTTATGCTTCCTGGTGCCCATTCTCACGTGCTGTGCGCCCTAAGTTTGATA 629
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 460 CAGTACTCTTTTATGCTTCCTGGTGCCCATTCTCACGTGCTGTGCGCCCTAAGTTCGATA 519
Query 630 TGTTGAGTTCCATGTTTCCTCAAATACAACACCTAGCTGTGGAGCATTCTCAAGCACTGC 689
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 520 TGTTGAGTTCGATGTTTCCTCAAATACAGCACCTAGCTGTGGAGCATTCTCAAGCACTGC 579
Query 690 CATCTGTCTTTTCTAGGTATGGTATCCATAGCTTACCTTCAATCCTGATGGTAAATCAAA 749
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 580 CATCTATCTTTTCTAGCTATGGTATCCATAGCTTACCTTCAATCCTGATGGTGAATCAAA 639
Query 750 CTTTAAATGCTCGGTACCATGGTCGAAAGGATCTTATATCCCTGATTGAGTTTTATGAAG 809
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 640 CTTTAAAGGCTCGGTACCATGGTCGAAAGGATCTTACATCCCTGATTGAGTTTTATGAAG 699
Query 810 AGGCAACAGGCCTCCAACCTGTCCAGTATGTGGCTGAAGGGGAACCAACAGGCTTAAATG 869
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 700 AGGCAACAGGTCTCCAACCTGTCCAGTATGTGGCTGAAGGGGAACCAACAGGCTTAGACG 759
Query 870 CCGGTGATGGTAACTTGATCACATGGTTGCGCAAGGGGACATCTATTAGAGAAATATTCA 929
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 760 CCGGCGATGGTAACTTGATCACATGGTTGCGCAACGGGACATCTATCAGAGAAATATTCA 819
Query 930 AACAAGATCCGTTCTTGGTACTATCTCTGCTGTTTATCTGTTTACAAATGGCAATCCTTG 989
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 820 AACAAGATCCGTTCTTGGTACTATCTCTGCTGTTTATCTGTTTACAAATGGCAATCCTCG 879
Query 990 TCTTCCCCATAGCTGAATCCCGCATGAGAGCGTTATGGGCTTCTTACGTTGCCAATTTGA 1049
||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||
Sbjct 880 TCTTCCCCATAGCTGAATCCCGCATGAAAGCGTTATGGGCTTCTTATGTTCCCAATCTGA 939
Query 1050 ACTTGGGAAGATTTGGAGAGATAAGCCAACTGTTCAACCGTGGTATTCACATGGTCGATG 1109
|| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 940 ACCTGGAAAGATTTGGAGAGATAAGCCACCTGTTCAGCCGTGGTATTCACATGGTCGATG 999
Query 1110 TGAGGAGGTTATGGTTGAAACTAAGTCTCGTCAAAACAAGAAACTTCCATGAAAGGGCAA 1169
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 1000 TGAGGAGGTTATGGTTGAAACTAAGCCTCGTCAAAACAAGGAACTTCCATGAAAGAGCAA 1059
Query 1170 AGAACGCACAAGCTTGGGCTTCATCGCTGGCATCTGTCTCTCTAGGCCAAACTTCATCAG 1229
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AGAACGCACAAGCCTGGGCTTCATCGCTGGCATCTGTCTCTCTAGGCCAAACTTCATCAG 1119
Query 1230 ACCAATCCTGATCTCAAGGGTAAGATCATGTCAGTATTGGGAAGAGATGAGCTTTTAAGT 1289
|||||||||||||| |||||||||||| |||||| |||||||||||||||||||| ||||
Sbjct 1120 ACCAATCCTGATCTTAAGGGTAAGATCCTGTCAGCATTGGGAAGAGATGAGCTTT-AAGT 1178
Query 1290 GTGTGCTGGAAATCTGAGAGTTCCTTTAATGAA-----TGTTATATGACTTATTTGAGTT 1344
|||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1179 GTGTTCTGGAAATCTGAGAGTTCCTTTAATGAAACCCCTGTTATATGACTTTTTTGAGTT 1238
Query 1345 TGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGCTTCTGTTTGTGAATAT 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGCTTCTGTTTGTGAATAT 1298
Query 1405 CT-T-T--CTCCCTTTTTTGTTCTATAAATTTGAGATGTCTGTTTTTGGCCTCATTTCTT 1460
|| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1299 CTATCTTTCTCCCTTTTTTGTTCTATAAATTTGAGATGTCTGTTTT-GGCCTCATTTCTT 1357
Query 1461 TTACTGAATAATTTGATTGAGTCAGGTAAA 1490
||||||||||||||||||||||||| ||||
Sbjct 1358 TTACTGAATAATTTGATTGAGTCAGCTAAA 1387
Score = 206 bits (111), Expect = 5e-52
Identities = 193/230 (84%), Gaps = 16/230 (7%)
Strand=Plus/Plus
Query 1 GTGCTCCAGAAT-TTGTAAGATCGGGTGGTGCTATTTAAATCCAATATCAGAAACACGTC 59
|||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GTGCTCCAGAATATT-AAAGATCGGGTGGTGCTATTTAAATCCAATATCAGAAACACATG 59
Query 60 GAACGAGACCAATAGAGCTAGCTTCTGA-TACA-TTTCGAC-TTTGGCGTTTCTCGATCT 116
||||||||| ||| ||||| ||||||| || | |||| || |||||||||| |||||||
Sbjct 60 GAACGAGACGAAT--AGCTACCTTCTGATTAAATTTTCAACTTTTGGCGTTTTTCGATCT 117
Query 117 GTTGTTTCTGCTCCCaaataaaaa-taaaaaaaaaTCGGATCGGGGATTTCCCCAAATCG 175
||||||||||| ||| ||||| || || ||||||||| ||||||||||||| |
Sbjct 118 GTTGTTTCTGC-AAAAAAAAAAAATTAGTGAATTTTCGGATCGGAGATTTCCCCAAATTG 176
Query 176 TAAAATTAGGTTTTGTTCTTCA--T--T--T-CTAGCCCTAGCTTAGTTT 218
||||||||||||||||||||| | | | ||||||||||||||||||
Sbjct 177 TAAAATTAGGTTTTGTTCTTCGCCTCCTCGTTCTAGCCCTAGCTTAGTTT 226
> Ahg941333 jgi|Araly1|941333|scaffold_601877.1
Length=919
Score = 460 bits (249), Expect = 1e-128
Identities = 606/773 (78%), Gaps = 45/773 (6%)
Strand=Plus/Plus
Query 427 CGTTTGCAATTACGAATTCGAGCTGTTTCGATTCGATTTAGAGGCCAA-ATGTCCTCCTT 485
|||||||||| |||| |||||| ||||||||| ||| | || || || |||||||| ||
Sbjct 105 CGTTTGCAATCACGATTTCGAGGTGTTTCGATGCGAGATCGA-GCAAATATGTCCTCGTT 163
Query 486 CTCTGTATCC-AACTCCTCCTATTGAGGTAGATGGAGACTCACTAGACAGGCTAATGGCT 544
||| ||||| | | |||||||| |||||||||||||||| ||||||| || |||| |
Sbjct 164 TTCTCTATCCGAGC-CCTCCTATCGAGGTAGATGGAGACTTGCTAGACAAACTCATGGAT 222
Query 545 TCACAAC-ATGGAAATGCTTATATGTCTGTACTCTTTTATGCTTC-CTGGTGCCCATTCT 602
|| ||| ||||||||||||||| || |||| |||||||| || | ||||||| || |
Sbjct 223 GCA-AACAATGGAAATGCTTATACATCCATACTATTTTATGCCTCAC-GGTGCCCGTTTT 280
Query 603 CACGTGCTGTGCGCCCTAAGTTTGATATGT-TGAGTTCCATGTTTCCTCAAATACA-ACA 660
||||||| || ||||| ||||||||| | | ||||||| ||||||||||| ||| | ||
Sbjct 281 CACGTGCAGTACGCCCAAAGTTTGATGT-TCTGAGTTCAATGTTTCCTCACATA-AGGCA 338
Query 661 CCTAG-CTGTGGAGCATTCTCAAGCACTGCCATCTGTCTTTTCTAGGTATGGTATCCATA 719
||| | ||| ||||| ||||| || | |||||||||||||||||||||||||||||||
Sbjct 339 CCT-GATTGTTGAGCAATCTCAGGCTTTACCATCTGTCTTTTCTAGGTATGGTATCCATA 397
Query 720 GCTTACCTTCAATCCTGATGGTAAATCAAACTTT-AA-ATGCTCGGTACCATGGTCGAAA 777
|||| ||||||||||||||||| |||||||| | || |||| | |||||||||| |||
Sbjct 398 GCTTGCCTTCAATCCTGATGGTGAATCAAACAATGAAGATGC--GATACCATGGTCAAAA 455
Query 778 GGATCTTATATCCCTGATTGAGTTTTATGAAG-AGGCAACAGGCCTCCAACCTGTCCAGT 836
||||||| |||||| || ||||||| ||| | ||||||| || ||||||| ||||
Sbjct 456 GGATCTTGCATCCCTTATCCAGTTTTAC-AAGGAAACAACAGGTCTTAAACCTGTTCAGT 514
Query 837 ATGTGGCTGAAGGGGAACCAACAGGCTTAAATGCCGGTGATGGTAACTTGATCACATGGT 896
|||||| ||| | ||||||||| |||| | | |||||||||| |||||||||||
Sbjct 515 ATGTGGATGATGTTGAACCAACAAGCTTGGACAC---TGATGGTAACCTGATCACATGGC 571
Query 897 TGCGCAAGGGGACATCTATTAGAGAAATATTCA-AACA-AGATCCGT-TCTTGGTACTAT 953
| | ||| ||| ||||||| |||||| || || || | ||| || | | | |||||| |
Sbjct 572 TACACAACGGGTCATCTATCAGAGAAGTAG-CAGAA-AGAGAGCCATATAT-GGTACT-T 627
Query 954 -C-TCTGCTGTTTATCTGTTTACAAA-TGGCAATCCTTG-TCTTCCCCAT-A-GCTGAAT 1007
| | || ||||| | | ||| ||| ||||||| ||| |||||||||| | | || |
Sbjct 628 GCGT-TGATGTTTCTGTCTTTG-AAACTGGCAATT-TTGATCTTCCCCATCATGG-GA-T 682
Query 1008 CCCGCATGAGAGCGTTATGGGC-TTCTTACGTTGC-CAATTTGAACTTGGGAAGATTTGG 1065
| ||| ||| | |||||||||| || | | ||| | || | ||| ||||| | | | ||
Sbjct 683 CACGCTTGAAAACGTTATGGGCATTGT-ATGTTCCGCA-TCTGAGCTTGGCTATACTCGG 740
Query 1066 AGAGATAAGCCAACTGTTCAACCGTGGTATTCACATGGTCGATGTGAGGAGGTTATGGTT 1125
|||| ||||||||| || ||||| | |||||| ||||||||||||| ||||| |
Sbjct 741 TGAGACAAGCCAACTCTTTGGCCGTGCCCTGCACATGATCGATGTGAGGAGACTATGGAT 800
Query 1126 GAAACTAAGTCTCGTCAAAACAAGAAACTTCCATGAAAGGGCAAAGAACGCAC 1178
|||||| || ||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 801 GAAACTGAGACTCACCAAAACAAGGAACTTCCAAGAAAGGGCAAAGAACGCAC 853
> Ahg925874 jgi|Araly1|925874|scaffold_201435.1
Length=218
Score = 278 bits (150), Expect = 1e-73
Identities = 191/208 (92%), Gaps = 14/208 (7%)
Strand=Plus/Minus
Query 1279 AGC-TTTTAAGTGTGTGCTGGAAATCTGAGAG----TTCCTTTAATG-AA----TGTTAT 1328
||| |||||||||||| ||||||||||||||| ||||||||||| || ||||||
Sbjct 204 AGCTTTTTAAGTGTGTTCTGGAAATCTGAGAGTTCCTTCCTTTAATGAAACCCCTGTTAT 145
Query 1329 ATGACTTATTTGAGTTTGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGC 1388
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 ATGACTTTTTTGAGTTTGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGC 85
Query 1389 TTCTGTTTGTGAATATCTTTCTCCCTTTTTTGTTCTATAAATTTGAGATGTCTGTTTTTG 1448
||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
Sbjct 84 TTCTGTTTGTGAATATCTTTCTCTCTTTTTTGTTCTATAAATTTGAG-T--CTGTTTT-G 29
Query 1449 GCCTCATTTCTTTTACTGAATAATTTGA 1476
||||||||||||||||||||||||||||
Sbjct 28 GCCTCATTTCTTTTACTGAATAATTTGA 1
> Ahg922044 jgi|Araly1|922044|scaffold_103325.1
Length=1429
Score = 198 bits (107), Expect = 9e-50
Identities = 140/154 (91%), Gaps = 10/154 (6%)
Strand=Plus/Minus
Query 1279 AGC-TTTTAAGTGTGTGCTGGAAATCTGAGAG----TTCCTTTAATG-AA----TGTTAT 1328
||| |||||||||||| ||||||||||||||| ||||||||||| || ||||||
Sbjct 1407 AGCTTTTTAAGTGTGTTCTGGAAATCTGAGAGTTCCTTCCTTTAATGAAACCCCTGTTAT 1348
Query 1329 ATGACTTATTTGAGTTTGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGC 1388
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 ATGACTTTTTTGAGATTGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGC 1288
Query 1389 TTCTGTTTGTGAATATCTTTCTCCCTTTTTTGTT 1422
||||||||||||||||||||||| ||||||||||
Sbjct 1287 TTCTGTTTGTGAATATCTTTCTCTCTTTTTTGTT 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5