BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03880.1
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477641 jgi|Araly1|477641|fgenesh2_kg.3__342__AT3G03880.1 1170 0.0
> Ahg477641 jgi|Araly1|477641|fgenesh2_kg.3__342__AT3G03880.1
Length=941
Score = 1170 bits (633), Expect = 0.0
Identities = 804/881 (91%), Gaps = 34/881 (4%)
Strand=Plus/Plus
Query 140 TCTGTGTTTGCCAATCAGATTCACCGGAACTTCTAGTTAGGACGATTG--TGAAAAATGT 197
|||| |||||||| |||||||||||||||||||| | || || ||| | | ||||||||
Sbjct 75 TCTGCGTTTGCCAGTCAGATTCACCGGAACTTCTGGATA-GA-GATAGCTTCAAAAATGT 132
Query 198 CGTCATCGTTAGAACAAGAAATCTTCTTACAGTGGGGAAACAAGAAGAGATTGAGATGTC 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 CGTCATCGTTAGAACAAGAAATCTTCTTACAGTGGGGAAACAAGAAGAGATTGAGATGTC 192
Query 258 TTAGAGCCAAAGCCAAAAAGATCTCTCGTTCTAAAAACTCTTCTCGCTTTCTAGGTCAAG 317
|||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 193 TTAGAGCCAAAGACAAAAAGATCTCTCGCAGTAAAAACTCTTCTCGGTTTCTAGGTCAAG 252
Query 318 ATACCGTCCTCCTTCAATCCTCTAGATTCTCCAGAGGATCAGAAGGAGCAATCCTCAGAT 377
||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 253 ATACCTTCCTCCTTCAATCCACTAGATTCTCCAGAGGATCAGAAGGGGCAATCCTCAGAT 312
Query 378 CTGGACTACCAGATCGCCGGAGACCGTCTCCGGAGAAAGAGGAGAGGTATTATACTACGA 437
|||||||||||||||||| | | ||||||||||| |||||||||||||| ||||
Sbjct 313 CTGGACTACCAGATCGCC---G---G---CCGGAGAAAGAAGAGAGGTATTATACGACGA 363
Query 438 GAGGTGTAGTGGATAACATTGGGAAAGATTGTTTAGATGGAAAC-AT--CAATGGAGAAG 494
|||||||||| |||| ||||||||||| ||||||||||| |||| || ||||||||||
Sbjct 364 GAGGTGTAGTTGATAGCATTGGGAAAGTTTGTTTAGATGAAAACAATAATAATGGAGAAG 423
Query 495 ATAGCAACAACAAGGAAGAGAGTATGTGGCCTAAGCTCTTTATAACATTATCAAACAAAG 554
|| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 424 ATGGCAACAACAAGGAAGAGAGTATGTGGCCTAAGCTGTTTGTAACATTATCAAACAAAG 483
Query 555 AGAAAGAAGAAGATTTCATGGCTATGAAAGGTTGCAAACCTTCTCATAGGCCTAAGAAGA 614
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 AGAAGGAAGAAGATTTCATGGCTATGAAAGGTTGCAAACCTTCTCATAGGCCTAAGAAGA 543
Query 615 GAGCTAAACTCATCCAAAGAAGCTTACTTTTGGTGAGTCCTGGAACATGGTTGGCTGATT 674
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GAGCCAAACTCATCCAAAGAAGCTTACTTTTGGTGAGTCCTGGAACATGGTTGGCTGATT 603
Query 675 TGTGCCCTGATAGATACGATGTTAGGGTGAAGAAGAGCTCTAAGAAGAGGCGAGCAAGAG 734
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TGTGCCCAGATAGATATGATGTTAGGGTGAAGAAGAGCTCTAAGAAGAGGCGAGCAAGAG 663
Query 735 GGCTAAAAGCCATGGGAAACATGGAGACTGATTCAGATTGACAAGTTTTAAGATTAGTTT 794
|||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||
Sbjct 664 GGCTAAAAGCTATGGGAAATATGGAGACTGATTCAGATTGAGATGTTTTAAGATTAGTTT 723
Query 795 ACTA----GAAATGTTTGCGTATTGATTTAAGCTAACTTTCGTGGGTTT-CCTTAAGCAA 849
| || ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 724 ATTAATTAGAAATGTTTGCGTATTGATCTAAGCTAACTTTCGTGGGTTTACCT-AAGCAA 782
Query 850 TCTTTAAGAATGTATTTTAGATGAAATTATTCGGTTGAGCACTTTGAA--------CACA 901
|||| ||||| |||||||||||||||||||||||||||||| |||||| ||||
Sbjct 783 TCTTAAAGAA-GTATTTTAGATGAAATTATTCGGTTGAGCATTTTGAATTATAATTCACA 841
Query 902 AGGATATATCATTTCTTT-GTGACAATGTATGTACCTGTTGTAACTTGTAACCCTATCCT 960
|||| ||||||||||||| |||||||||||||| | |||||||||||||||| |||||
Sbjct 842 AGGAAATATCATTTCTTTTGTGACAATGTATGTTCTTGTTGTAACTTGTAACTCTATCAA 901
Query 961 AATCTATTGTTTCAGATAATGTACT-TTAGTCCTATTTGGC 1000
||||||||||||| ||||||||||| || ||||||||||||
Sbjct 902 AATCTATTGTTTCTGATAATGTACTGTT-GTCCTATTTGGC 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37436704494
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5