BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03890.1
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477642 jgi|Araly1|477642|fgenesh2_kg.3__343__AT3G03890.1 1504 0.0
> Ahg477642 jgi|Araly1|477642|fgenesh2_kg.3__343__AT3G03890.1
Length=1473
Score = 1504 bits (814), Expect = 0.0
Identities = 1010/1101 (92%), Gaps = 27/1101 (2%)
Strand=Plus/Plus
Query 438 AGAGACGTGTAAACCAAAGAACAACGAAGGTTTCGTTTCGTGGGGAAGAAGATGAAGTCG 497
||||||||||||| ||||||||| |||| | |||||||| ||||||||||||||||
Sbjct 334 AGAGACGTGTAAATCAAAGAACATCGAA-G----GTTTCGTGAGGAAGAAGATGAAGTCA 388
Query 498 CTTGTGGCTCATTTCTCAACGCCTTTAATCACCG-CTAGATTAGTT-CCTAGATGTATCA 555
|||||||| |||||||||||||||||||||| || ||||||| ||| |||| |||| | |
Sbjct 389 CTTGTGGCCCATTTCTCAACGCCTTTAATCA-CGTCTAGATT-GTTCCCTACATGTCTTA 446
Query 556 TCCATCGAGCTTCAATCTCCGCCGTCTCTTTTTCCACCGTCCGCCGTCGATTTTCTCCTC 615
| |||||| ||||||||||||||||| |||| ||||||||||||| |||| ||||||||
Sbjct 447 TTCATCGACCTTCAATCTCCGCCGTCAATTTTCCCACCGTCCGCCGCCGATATTCTCCTC 506
Query 616 TCACCATGGCCTCAGCAGCTCAGTCTTCTTCTCAGGCTGTGTCTTA-C-GGGAGTGGCAA 673
|||||||||||||||||||||||||||||||||||||||| || | | ||||||| |||
Sbjct 507 TCACCATGGCCTCAGCAGCTCAGTCTTCTTCTCAGGCTGTATC--ACCTGGGAGTGTCAA 564
Query 674 CAGTGATACAGATGTTTTTAAATTGATTCAAGCTCACGAGGAGAAGGCTGCTCGTCTTTC 733
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 565 CAGTGATACAGATGTTTTCAAATTGATTCAAGCTCACGAGGAGAAGGCTGCTCGTCTTTC 624
Query 734 CCCAGTCGAAGAAATCCGAACTGTGCTTAATGGTAGCATATGCGGTATGCTTTCCACTTT 793
||||| || |||||||| ||||| ||||||||||| | || |||||||||||||||||
Sbjct 625 TCCAGTTGACGAAATCCGGACTGTTCTTAATGGTAGTGTTTGTGGTATGCTTTCCACTTT 684
Query 794 TTCTCAGAAGTATGAGGGTTATCCTTCAGGGTCAATGGTTGATTTTGCATGTGATGCTGA 853
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TTCTCAGAAATATGACGGTTATCCTTCAGGGTCAATGGTTGATTTTGCATGTGATGCTGA 744
Query 854 TGGTTCTCCGATTCTGGCAGTTAGTAGCTTGGCAGTTCATACAAAGGATCTCTTAGCTAA 913
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 745 TGGTTCTCCGATTCTGGCAGTTAGTAGCTTGGCAGTTCATACAAAGGATCTGTTAGCTAA 804
Query 914 TCCAAAATGCTCATTACTAATTGCTAGAGACCCAGAGGATAGGACTGGTTTGAGGATCAC 973
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 805 TCCAAAATGCTCATTACTAATTGCTAGAGACCCAGAGGATAGGACCGGTTTGAGGATCAC 864
Query 974 CTTACATGGTGATGCAGTGTTGGTTTCTGAAAAAGATCAAGCAGCTGTTCGATCTGCCTA 1033
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 865 CCTACATGGTGATGCAGTGTTGGTTTCTGAAAAAGATCAAGCGGCTGTTCGATCTGCCTA 924
Query 1034 TTTAGCCAAGCATCCCAAAGCTTTCTGGGTTGATTTTGGGGACTTCAGCTTTATGCGAAT 1093
||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 925 TTTAGCCAAGCATCCCAGTGCTTTCTGGGTTGATTTCGGGGACTTCAGTTTTATGCGAAT 984
Query 1094 TGAACCGAAAGTGGTCAGATATGTTTCAGGGGTTGCAACTGCTTTTCTTGGATCTGGAGA 1153
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 985 CGAACCGAAAGTGGTCAGATATGTTTCAGGGATTGCAACTGCTTTTCTAGGATCTGGAGA 1044
Query 1154 ATTTAGCAAAGAGGAGTACCAAGCAGCCAAAGTCGATCCTATAGCTCAGTATGCAAAACC 1213
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1045 ATTCAGCAAAGAGAAGTACCAAGCAGCCAAAGTCGATCCTATAGCTCAGTATGCAAAGCC 1104
Query 1214 TGTAACGTCTCACATGAATAAAGACCATGAAGAGGATACCAAAGCCATTGTACATAATAT 1273
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 1105 TGTAACGTCTCACATGAATAAAGACCATGAAGAGGATACCAAAGCCATAGTACACAATGT 1164
Query 1274 AACATCCATACCTGTGGAAAGCGCCTTGATGCTGGATTTGGATAGCCTTGGTTTCAATGT 1333
|| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1165 GACGTCCATACCTGTGGAGAGCGCCTTGATGCTTGATTTGGACAGCCTTGGTTTCAACGT 1224
Query 1334 TAAGGCTACTCTTCAAGGGAACACCTTCAAACTCCGAGTTCCGTTTCCAAGACGCGCACA 1393
|||||||| |||||||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct 1225 TAAGGCTAGTCTTCAAGGGAATACCTTCAAGCTCCGAGTTCCATTCCCAAGACGCGCACA 1284
Query 1394 AGACAGAAAGGATGTAAAGACATTGATTGTGGAAATGCTTCAAGCTGCCAAG--T---CC 1448
||||||||||||||| |||||| | || |||||||||||||||||||| ||| | ||
Sbjct 1285 AGACAGAAAGGATGTGAAGACACTAATAGTGGAAATGCTTCAAGCTGCTAAGCCTATTCC 1344
Query 1449 -AATTAGTT-GCTAAAATAAA-GATGGAAAAGCTCT-TC--C-ATCTGAATCCTGCTACA 1501
|||||||| ||||||| ||| |||||||||||||| || | ||||||| |||||||||
Sbjct 1345 CAATTAGTTTGCTAAAAAAAAAGATGGAAAAGCTCTCTCTACCATCTGAAACCTGCTACA 1404
Query 1502 ACAAGAA-AAGCTTCCTCCAA 1521
|||| || |||||||||||||
Sbjct 1405 ACAA-AAGAAGCTTCCTCCAA 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62010918860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5