BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03900.1
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927923 jgi|Araly1|927923|scaffold_300380.1 1020 0.0
> Ahg927923 jgi|Araly1|927923|scaffold_300380.1
Length=670
Score = 1020 bits (552), Expect = 0.0
Identities = 603/628 (96%), Gaps = 2/628 (0%)
Strand=Plus/Plus
Query 1 ATGTCGACAGTGGGAAATTCAACGAACATATTTTGGCAAGAATCCCCCATTGGGAAAACT 60
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 21 ATGTCGACAGTGGGAAATTCGACGAACATATTTTGGCAAGAATCACCCATTGGGAAAACT 80
Query 61 GAAAGGCAGAAGTTGTTAAATCAGAAGGGTTGTGTGGTGTGGATCACAGGGCTCAGTGGC 120
||||||||||||||| |||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 81 GAAAGGCAGAAGTTGCTAAACCAAAAGGGTTGTGTGGTGTGGATCACAGGGTTCAGTGGC 140
Query 121 TCAGGGAAAAGCACGTTAGCTTGCTCGCTTAGTAGAGAGCTGAACAACCGGGGAAAGCTA 180
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 141 TCAGGGAAAAGCACGCTAGCTTGCTCGCTGAGTAGAGAGCTGAACAACCGGGGAAAGCTA 200
Query 181 TCATATATTCTTGATGGTGACAATCTTCGTCATGGTTTGAACAAAGATCTTGGTTTCAAG 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCATATATTCTTGATGGGGACAATCTTCGTCATGGTTTGAACAAAGATCTTGGTTTCAAG 260
Query 241 GCAGAGGATAGAGTGGAAAATATACGCAGGGTCGGAGAAGTAGCCAAACTCTTTGCGGAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 261 GCAGAGGATAGAGTGGAAAATATACGCAGGGTCGGAGAAGTAGCCAAACTCTTTGCAGAT 320
Query 301 GCTGGTTTAATCTGTATTGCCAGCCTCATATCCCCGTATAGAAAAGACCGTGACGCCTGC 360
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 321 GCTGGTTTGATCTGTATTGCCAGCCTCATATCGCCGTATAGAAAAGACCGTGACGCCTGC 380
Query 361 AGGGAAATGATACAGAATTCATCTTTTATTGAGGTTTTCATGAACATGTCTCTGCAATTG 420
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AGGGAAATGATGCAGGATTCATCTTTTATTGAGGTTTTCATGAACATGTCTCTGCAATTG 440
Query 421 TGTGAAGCAAGGGACCCTAAAGGCCTATACAAGCTTGCACGTGCAGGAAAGATCAAAGGT 480
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 441 TGTGAAGCAAGAGACCCTAAAGGCCTGTACAAGCTTGCACGTGCAGGGAAGATCAAAGGT 500
Query 481 TTCACAGGAATAGATGATCCGTATGAGTCTCCCTTGAACTGTGAGATAGAGTTGAAAGAG 540
||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 501 TTCACTGGAATAGATGATCCGTATGAATCTCCCTTGAATTGTGAGATAGAGCTGAAAGAG 560
Query 541 AAAGAGGGAGAGTGTCCTTCCCCTGTAGCTATGGCTGAGGAAGT-GATCTCTTATCTAGA 599
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 561 AAAGAGGGAGAGTGTCCTTCCCCTGTAGCTATGGCTGAGGAAGTCG-TCTCTTATTTAGA 619
Query 600 AGACAAAGGTTTCCTTCAAAACGAGTAA 627
||||||||| ||||||||||||||||||
Sbjct 620 AGACAAAGGCTTCCTTCAAAACGAGTAA 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22949996034
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5