BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03910.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927924 jgi|Araly1|927924|scaffold_300381.1 1982 0.0
Ahg488683 jgi|Araly1|488683|fgenesh2_kg.6__1817__AT5G18170.1 1334 0.0
> Ahg927924 jgi|Araly1|927924|scaffold_300381.1
Length=1276
Score = 1982 bits (1073), Expect = 0.0
Identities = 1200/1263 (95%), Gaps = 2/1263 (0%)
Strand=Plus/Plus
Query 52 AAAGAAGAGAGAAGAAAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAGCTTG 111
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAAAAAGAGAGAAGAGAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAGCTAG 60
Query 112 CTTCTAGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCCTTCAGAG 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTAGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCCTTCAGAG 120
Query 172 AGATCAAGGTGGAATGTACCATACCAAAAGACGATGGAACTCTAGCATCCTTTGTTGGAT 231
||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct 121 AGATCAAGGTGGAATGTACCATACCGAAAGATGATGGAACTCTTGCATCATTTGTTGGAT 180
Query 232 TCAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAG 240
Query 292 AGGTTGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGG 351
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGTCGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGG 300
Query 352 CTAAGATACCTTATGGAGGAGCCAAAGGAGGAATCGGTTGTGACCCGAGCGAGCTAAGTC 411
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 CTAAGATACCTTACGGAGGAGCCAAAGGAGGAATCGGTTGTGACCCGAGCCAGCTAAGTA 360
Query 412 TCTCAGAGCTCGAACGTTTGACTCGAGTTTTCACTCAGAAGATTCACGATCTTATTGGGA 471
|||||||||| |||||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 361 TCTCAGAGCTGGAACGTTTGACTCGAGTTTTCACTCAGAAGATCCATGATCTCATCGGGA 420
Query 472 TTCATACTGATGTTCCAGCTCCTGATATGGGAACCGGTCCTCAGACAATGGCTTGGATTC 531
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCATACCGATGTTCCAGCTCCTGATATGGGAACCGGTCCTCAGACAATGGCTTGGATTC 480
Query 532 TTGATGAATACTCAAAATTCCATGGACATTCTCCTGCTGTTGTCACTGGAAAACCCATTG 591
||||||||||||||||||||||||| || || |||||||| || || |||||||||||||
Sbjct 481 TTGATGAATACTCAAAATTCCATGGGCACTCGCCTGCTGTGGTGACCGGAAAACCCATTG 540
Query 592 ATCTTGGTGGATCTCTTGGGAGAGATGCTGCTACAGGAAGAGGAGTGTTGTTTGCAACAG 651
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 ATCTCGGTGGATCTCTTGGAAGAGATGCTGCTACAGGAAGAGGAGTGTTATTTGCAACAG 600
Query 652 AAGCTTTACTCAACGAACATGGAAAGACCATATCTGGACAGCGATTCGCCATCCAGGGCT 711
||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 601 AAGCTTTACTCAATGAACATGGAAAGAGCATATCTGGACAGCGATTCGCTATCCAGGGTT 660
Query 712 TTGGAAATGTGGGTTCTTGGGCAGCGAAGTTGATAAGTGACAAAGGTGGTAAGATTGTGG 771
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 661 TTGGAAATGTGGGTTCTTGGGCAGCGAGGTTGATAAGTGAAAAAGGTGGTAAGATTGTGG 720
Query 772 CGGTGAGTGATGTCACAGGAGCAATCAAGAACAATAATGGAATTGACATCTTGAGTTTGC 831
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 CGGTGAGTGATGTCACAGGAGCAATCAAGAACAAGAATGGAATTGACATCTTGAGTTTGC 780
Query 832 TCGAGCATGCTGAAGAAAACAGAGGAATCAAAGGGTTTGATGGTGCTGATTCAATCGATC 891
| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 781 TGGAGCATGCCGAAGAAAACAGAGGAATCAAAGGGTTTGATGGTGCTGATTCAACCGATC 840
Query 892 CTGATTCGATTCTTGTCGAAGATTGTGATATTCTTGTCCCTGCAGCTCTAGGGGGAGTCA 951
||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 841 CTGATACGATTCTTGTCGAAGATTGTGATATTCTTGTCCCCGCAGCTCTAGGCGGTGTCA 900
Query 952 TCAACAGGGAAAATGCAAACGAAATAAAAGCCAAATTCATCATTGAAGGTGCTAATCACC 1011
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 901 TCAACAGGGAAAATGCAAACGAAATCAAAGCGAAATTCATCATTGAAGGTGCTAATCACC 960
Query 1012 CAACTGATCCTGAGGCTGACGAGATCTTGAAGAAGAAAGGTGTTATGATCCTCCCAGATA 1071
||||||||||||||||||| |||||||||| ||||||||||||| | |||||||||||||
Sbjct 961 CAACTGATCCTGAGGCTGATGAGATCTTGAGGAAGAAAGGTGTTGTAATCCTCCCAGATA 1020
Query 1072 TATACGCAAACTCAGGAGGAGTCACTGTAAGTTACTTCGAGTGGGTTCAGAACATACAAG 1131
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1021 TATACGCAAACTCGGGAGGAGTTACTGTAAGTTACTTCGAGTGGGTTCAGAACATACAAG 1080
Query 1132 GATTCATGTGGGATGAGGAAAAGGTGAATAGGGAGCTAAAGACCTACATGACTCGCGGGT 1191
| |||||||||||||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct 1081 GGTTCATGTGGGATGAGGAAAAGGTGAATAAGGAGCTAAAGACATATATGACTCGCGGGT 1140
Query 1192 TCAAAGACTTGAAAGAAATGTGTCA-GACGCACTCATGTGATCTCCGTATGGGAGCTTTC 1250
|||||||||| ||||| |||||| | ||| |||||||||||||| |||||||||||||||
Sbjct 1141 TCAAAGACTTAAAAGAGATGTGT-ATGACTCACTCATGTGATCTTCGTATGGGAGCTTTC 1199
Query 1251 ACCCTCGGTATTAATCGTGTCGCTCAAGCTACCACTATCAGAGGCTGGGGTTCTTGATAc 1310
|| || |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1200 ACTCTTGGTATTAACCGTGTCGCTCAAGCTACCATTATCAGAGGCTGGGGTTCTTGAAAC 1259
Query 1311 ccc 1313
|||
Sbjct 1260 CCC 1262
> Ahg488683 jgi|Araly1|488683|fgenesh2_kg.6__1817__AT5G18170.1
Length=1501
Score = 1334 bits (722), Expect = 0.0
Identities = 1080/1255 (86%), Gaps = 16/1255 (1%)
Strand=Plus/Plus
Query 53 AAGAAGAGAGAAGAAAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAGCTT-G 111
||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 100 AAGAAGA-AGAAG-AAGCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAG-TTAG 156
Query 112 CTTCTAGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCCTTCAGAG 171
|| |||||||||||||||| || || ||||||||||||||||||||||| |||||| |||
Sbjct 157 CTGCTAGGCTTCTTGGTTTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAG 216
Query 172 AGATCAAGGTGGAATGTACCATACCAAAAGACGATGGAACTCTAGCATCCTTTGTTGGAT 231
| ||||||||||||||||||||||| ||||||||||| || |||||||| || ||||| |
Sbjct 217 AAATCAAGGTGGAATGTACCATACCGAAAGACGATGGGACACTAGCATCATTCGTTGGGT 276
Query 232 TCAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAG 291
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 277 TTAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGCGGAATCAGATATCATCCCG 336
Query 292 AGGTTGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGG 351
||||||| ||||||||||| ||||| ||||||| || ||||||||||||||||||||||
Sbjct 337 AGGTTGATCCGGATGAAGTGAACGCACTGGCTCAGCTCATGACATGGAAAACAGCAGTGG 396
Query 352 CTAAGATACCTTATGGAGGAGCCAAAGGAGGAATCGGTTGTGACCCGAGCGAGCTAAGTC 411
||||||| || || ||||||||||||||||| || |||||||| |||||| |||| |||
Sbjct 397 CTAAGATTCCATACGGAGGAGCCAAAGGAGGGATTGGTTGTGATCCGAGCAAGCTCAGTA 456
Query 412 TCTCAGAGCTCGAACGTTTGACTCGAGTTTTCACTCAGAAGATTCACGATCTTATTGGGA 471
| || |||||||| || |||||||||||||||||||||||||| || ||||| |||||||
Sbjct 457 TATCCGAGCTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATCCATGATCTCATTGGGA 516
Query 472 TTCATACTGATGTTCCAGCTCCTGATATGGGAACCGGTCCTCAGACAATGGCTTGGATTC 531
|||| ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||
Sbjct 517 TTCAGACTGATGTTCCTGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTC 576
Query 532 TTGATGAATACTCAAAATTCCATGGACATTCTCCTGCTGTTGTCACTGGAAAACCCATTG 591
||||||| ||||| || ||||||||| |||| ||||| ||||| ||||||||||||||||
Sbjct 577 TTGATGAGTACTCTAAGTTCCATGGATATTCGCCTGCAGTTGTGACTGGAAAACCCATTG 636
Query 592 ATCTTGGTGGATCTCTTGGGAGAGATGCTGCTACAGGAAGAGGAGTGTTGTTTGCAACAG 651
||||||||||||| || |||||||| || ||||| |||||||||||| |||||| ||| |
Sbjct 637 ATCTTGGTGGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGAACCG 696
Query 652 AAGCTTTACTCAACGAACATGGAAAGACCATATCTGGACAGCGATTCGCCATCCAGGGCT 711
||||||| || ||||| || || |||| |||||| || ||||| || | ||||||||| |
Sbjct 697 AAGCTTTGCTTAACGAGCACGGCAAGAGCATATCGGGGCAGCGTTTTGTCATCCAGGGAT 756
Query 712 TTGGAAATGTGGGTTCTTGGGCAGCGAAGTTGATAAGTGACAAAGG-TGGTAAGATTGTG 770
|||| ||||||||||||||||| || ||| |||||||||| ||||| ||| ||||||||
Sbjct 757 TTGGGAATGTGGGTTCTTGGGCGGCAAAGCTGATAAGTGA-AAAGGGTGGGAAGATTGTT 815
Query 771 GCGGTGAGTGATGTCACAGGAGCAATCAAGAACAATAATGGAATTGACATCTTGAGT-TT 829
||||||||||| | || |||||||||||||| || |||| || || ||| | | ||
Sbjct 816 GCGGTGAGTGACATTACCGGAGCAATCAAGAATAAGGATGGTATCGATATCCCG-GCCTT 874
Query 830 GCTCGAGCATGCTGAAGAAAACAGAGGAATCAAAGGGTTTGATGGTGCTGATTCAATCGA 889
|||| ||||| || ||||| ||||||| ||||||||||||| ||||| ||||| |||||
Sbjct 875 GCTCAAGCATACTAAAGAACACAGAGGTGTCAAAGGGTTTGACGGTGCAGATTCGATCGA 934
Query 890 TCCTGATTCGATTCTTGTCGAAGATTGTGATATTCTTGTCCCTGCAGCTCTAGGGGGAGT 949
||| | || || || ||||| ||||| ||||| || ||||||||||| || || || ||
Sbjct 935 TCCAAACTCCATACTGGTCGAGGATTGCGATATCCTCGTCCCTGCAGCACTTGGCGGTGT 994
Query 950 CATCAACAGGGAAAATGCAAACGAAATAAAAGCCAAA-TTCATCATTGAAGGTGCTAATC 1008
|||||||||||||||||| || || || ||||| ||| |||||||| |||| ||||||||
Sbjct 995 CATCAACAGGGAAAATGCGAATGAGATTAAAGC-AAAGTTCATCATAGAAGCTGCTAATC 1053
Query 1009 ACCCAACTGATCCTGAGGCTGACGAGATCTTGAAG-AAGAAAGGTGTTATGATCCTCCCA 1067
| ||||||||||| || || || |||||||||| | ||||||||||| | || ||||||
Sbjct 1054 ATCCAACTGATCCGGACGCGGATGAGATCTTGA-GTAAGAAAGGTGTGGTAATTCTCCCA 1112
Query 1068 GATATATACGCAAACTCAGGAGGAGTCACTGTAAGTTACTTCGAGTGGGTTCAGAACATA 1127
|| ||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1113 GACATATATGCAAACTCTGGAGGAGTCACTGTCAGTTACTTCGAATGGGTCCAGAACATT 1172
Query 1128 CAAGGATTCATGTGGGATGAGGAAAAGGTGAAT-AGGGAGCTAAAGACCTACATGACTCG 1186
||||| || |||||||| || || |||||||| ||| |||||||||| |||||||||||
Sbjct 1173 CAAGGGTTTATGTGGGAGGAAGAGAAGGTGAACGAGG-AGCTAAAGACTTACATGACTCG 1231
Query 1187 CGGGTTCAAAGACTTGAAAGAAATGTGTCAGA-CGCACTCATGTGATCTCCGTATGGGAG 1245
| ||||| ||||||||||| ||||| || | | ||||| || |||||||| |||||||
Sbjct 1232 CTCATTCAAGGACTTGAAAGAGATGTG-CAAAACTCACTCCTGCGATCTCCGGATGGGAG 1290
Query 1246 CTTTCACCCTCGGTATTAATCGTGTCGCTCAAGCTACCACTATCAGAGGCTGGGG 1300
||||||| || ||| |||||||||| ||||| ||||||| | |||||||||||||
Sbjct 1291 CTTTCACACTAGGTGTTAATCGTGTGGCTCAGGCTACCATTCTCAGAGGCTGGGG 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5