BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03920.1
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477645 jgi|Araly1|477645|fgenesh2_kg.3__346__AT3G03920.1 1297 0.0
> Ahg477645 jgi|Araly1|477645|fgenesh2_kg.3__346__AT3G03920.1
Length=829
Score = 1297 bits (702), Expect = 0.0
Identities = 792/834 (95%), Gaps = 12/834 (1%)
Strand=Plus/Plus
Query 8 GTCGTCGCTCTCAATTAAACCCTAAAACCCTCCTCAGAAGAGAGGCAGAGAG--a-aaaa 64
||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||
Sbjct 2 GTCGTCGCTCTCAATTAAACCCTAAAACCCTCCACTGAAGAGAGGCAGAGAGAAAGAAAA 61
Query 65 aaaCGCAGTCTTTGCGGAATCTGTGAAAGGAGAAAAGATGAGACCACCAATGAGAGGCGG 124
|||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 62 AAACGCAGTCTTTGAGGAATCTGAGAAAGGAGAAAAGATGAGACCACCGATGAGAGGCGG 121
Query 125 CGGGGGTTTCCGTGGAAGGGGAGGACGAGACGGTGGTGGTGGCGGTAGGTTCGGTGGAGG 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 122 CGGGGGTTTCCGTGGAAGGGGAGGACGAGACGGTGGTGGTGGCGGTAGATTCGGTGGAGG 181
Query 185 AGGCGGTAGATTCGGTGGAGGAGGAGGACGCTTTGGTGGTGGAGGCGGTCGCTTTGGTGG 244
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TGGCGGTCGATTCGGTGGAGGAGGAGGACGCTTTGGTGGTGGAGGCGGTCGCTTTGGTGG 241
Query 245 TTTTAGAGACGAAGGTCCTCCTAGCGAAGTCGTGGAGGTTGCAACTTTCGTTCATGCTTG 304
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 242 TTTCAGAGACGAAGGTCCTCCTAGCGAAGTCGTGGAGGTCGCAACTTTCGTTCATGCTTG 301
Query 305 CGAGGGAGATGCTGTGACCAAACTCTC-ACAGGAGAAGATTCCTCATTTTAACGCT-CCG 362
|||||||||||||||||| |||||||| | | |||||||||||||||||||| ||| ||
Sbjct 302 CGAGGGAGATGCTGTGACTAAACTCTCTA-ATGAGAAGATTCCTCATTTTAATGCTGCC- 359
Query 363 ATCTACCTAGAGAACAAGACTCAGATTGGGAAAGTAGATGAAATCTTTGGCCCAATTAAT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 ATCTACCTAGAGAACAAGACTCAGATTGGGAAAGTAGATGAAATCTTTGGCCCTATTAAT 419
Query 423 GAATCTTTGTTTTCTATCAAAATGATGGAAGGTATTGTAGCCACCTCGTATTCTCCAGGA 482
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 GAATCTTTGTTTTCTATCAAAATGATGGAAGGTATTGTAGCCACCTCCTATTCTCCAGGA 479
Query 483 GATAAGTTCTTCATCGACCCTTACAAGCTTTTGCCACTCGCTCGATTCCTTCCTCAGCCA 542
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 480 GATAAGTTCTTCATCGACCCTTACAAGCTTTTGCCTCTCTCTCGATTCCTTCCCCAGCCA 539
Query 543 AAGGGTCAGTCAACGGGTGGACGTGGAGGTGCAGGTCGTGGAAGAGGTGATAGTAGAGGT 602
||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 540 AAGGGCCAGTCAACGGGTGGACGTGGAGGTGCAGGTCGTGGAAGGGGTGATGGTAGAGGT 599
Query 603 CGTGGAAGAGGTGGATCATTTAGTAGAGGTAGAGGTGCTCCAAGAGGTGGTAGATTTCCA 662
||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 600 CGTGGAAGAGGTGGATC-TTT--TAGAGGTAGAGGCGCTCCAAGAGGTGGTAGATTTCCA 656
Query 663 CCACGCGGTGGCTCTCGTGGAAGCTTTAGAGGCCGAGGAAGATTTTAGGTTCTTCTCCTG 722
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 657 CCACGCGGTGGCTCTCGTGGAAGCTTTAGAGGCCGGGGAAGATTTTAGATTCTTCTCCTA 716
Query 723 CTTTATAAGCCTTATCCAAACTTGTACCCTTTGTTTTATGAATGACTATCGTTCTCCC-G 781
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 717 CTTTATAAGCCTTATCCAAACTTGTACCCTTTGTTTTATCAATGACTATCGTTTTCCCAG 776
Query 782 TATTCTCAATTTTCAAGACTTTGGTTTTATCTATGGAGTAAAAATATTTGCATC 835
||||||||||||||||||||| |||| |||||||||||||||| |||||||||
Sbjct 777 -ATTCTCAATTTTCAAGACTTTTGTTTAATCTATGGAGTAAAAAAATTTGCATC 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30993931521
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5