BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03930.1
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340552 jgi|Araly1|340552|fgenesh1_pg.C_scaffold_3000315 1253 0.0
Ahg927930 jgi|Araly1|927930|scaffold_300387.1 856 0.0
Ahg340491 jgi|Araly1|340491|fgenesh1_pg.C_scaffold_3000254 706 0.0
Ahg488686 jgi|Araly1|488686|fgenesh2_kg.6__1820__AT5G18190.2 566 1e-160
> Ahg340552 jgi|Araly1|340552|fgenesh1_pg.C_scaffold_3000315
Length=867
Score = 1253 bits (678), Expect = 0.0
Identities = 809/872 (93%), Gaps = 10/872 (1%)
Strand=Plus/Plus
Query 1 ATGAGACCACCGATTAGCAGCGGAAGAATTGGTGATGGCGGACTTGATTCATGCCCTGAG 60
|||||||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1 ATGAGACCACCGATGGGCAGCGGAAGAACTGGTGGTGGCGGACGTGATTCATGCCCTGAG 60
Query 61 AAGAAAGAGGAAGAGAAAGACTCAACAAGTAGACTTTGTTCGGATTTGAGTGATTTACGA 120
||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| |
Sbjct 61 AAGAAAGAGAAAGAGAAAGACCCAACAAGTAGACTTTGCTCGGATTTGAGTGATTTACAA 120
Query 121 ATAGAAAGAATCGGAAGTACTCCTGCGTTCCAATGGATTTCAGTCTATACCAAACGTCCT 180
||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 121 ATAGAAAAAATCGCAAGTACTCCTACGTTCCAATGGATTTCAGTCTATAACAAACGTCCT 180
Query 181 CCTATGAAACAGAGATTTCACCACAACATTGCAAATTCAAGGTTGTC-GCATCATGCAGA 239
|||||||||||||||||||| |||||| | ||||||||||||||| | ||||||| |||
Sbjct 181 CCTATGAAACAGAGATTTCATCACAACGTAGCAAATTCAAGGTTG-CACCATCATGTAGA 239
Query 240 AAAAGGTAA-AAGGGATGGCCTTTTCATAAGCTGTGTAGCATCAGAAGCTAATCTCTGGG 298
|||| ||| || ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 240 GAAAGCTAACAA-TGATGGCCTTTTTATAAGCTGTGTAGCATCAGAAGCTAATCTATGGG 298
Query 299 CCTTAGTCATGGATGCTGGAACTGGTTTCACTTCTCAAGTTTATA-AATTTTCTTCTA-C 356
| || ||| ||||| || ||||||||||||||||||||||||| | || || || | |
Sbjct 299 CATTCGTCGTGGATAAAGGGACTGGTTTCACTTCTCAAGTTTATACAGTTATC-TC-AGC 356
Query 357 CTTCCTCCCCAAGGACTGGATTATGAAACAATGGGAGAAGAACTACTATATCAGTTCCAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTTCCTCCCCAAGGACTGGATTATGAAACAATGGGAGAAGAACTACTATATCAGTTCCAT 416
Query 417 AGCTGGTGCAAATAATGGGAGCTCATTGGTCGTTATGTCAAAAGGAACTCGTTATATCCA 476
||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||
Sbjct 417 AGCTGGTGCAAATAATGGGGGCTCGTTGGTCGTTATGTCAAAAGGAACTCTTTATA-CCA 475
Query 477 -GCAATCATACAAAACCGGTGACTCAATTCCATTAAAGTGGATGGATAAAAAGTGGAAAG 535
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGCAATCATACAAAACCAGCCACTCAATTCCATTAAAGTGGATGGATAAAAAGTGGAAAG 535
Query 536 AAGGTTTTCATGTAACATCCATGACCACGGGTGGGAGCCGTTGGGGTGTAGTAATGTCCA 595
|||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 536 AAGGTTTTCATGTAACATCCATGACCACTGCTGGGAGTGGTTGGGGTGTAGTAATGTCCA 595
Query 596 GGAACTCAGGCTTCTCTGAACAGGTGATGGAGGTTGACTTTTTGAACCCAAGTGAAGATA 655
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 596 GGAACTCAGGCTTCTCTGAACAGGTGATGGAGCTTGACTTCTTGAACCCAAGTGAAGATA 655
Query 656 TAAATCGAAGGTTGGAAAGTGGATACATGATAACATCAATGGCTGCAACAGCTGATCAAG 715
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 TAAATCGAAGGTTGGAGAGTGGATACAGGATAACATCAATGGCTGCAACAGCTGATCAAG 715
Query 716 CAGCTCTTATATTGAGTATACCTAGACGTAAAATAACCGATGAAATCCAAGAGACTTTAC 775
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 716 CAGCTCTTATATTGAGTATACCCAAACGAAAAATAACCGATGAAATCCAAGAGACTTTAC 775
Query 776 GCACTTCTTCCTTCCCTAGCTCCTATGTCAAGGACAAATGGGGGAAAAATATGTTCATAA 835
| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 776 GTACTTCTTCCTTCCCTAGCTCCTATATCAAGGACAAATGGGAGAAAAATATGTTCATAA 835
Query 836 CATCAATATGTTATGGTCGGACAGTTTGATAA 867
|||||||||||||||||||||||||||| |||
Sbjct 836 CATCAATATGTTATGGTCGGACAGTTTGCTAA 867
> Ahg927930 jgi|Araly1|927930|scaffold_300387.1
Length=2149
Score = 856 bits (463), Expect = 0.0
Identities = 647/736 (88%), Gaps = 12/736 (2%)
Strand=Plus/Plus
Query 154 TGGATTTCAGTCTATACCAAACGTCC-TCCTATGAAACAGAGATTTCACCACAACATTGC 212
|||||||||||||||| ||| || ||||||||||||||||| ||| |||| ||||
Sbjct 1416 TGGATTTCAGTCTATAATGCACG-CCGTCCTATGAAACAGAGATATCATTACAATGTTGC 1474
Query 213 AAATTCAAG-GTTGTCGCATCATGCAGAAAAAGGTAAAAG-GGATGGCCTTTTCATAAGC 270
| | ||||| ||| | || |||| || |||||| || | |||||||||||||||||||
Sbjct 1475 AGACTCAAGACTTG-CACAGCATGTTGAGAAAGGT-AACGAGGATGGCCTTTTCATAAGC 1532
Query 271 TGTGTAGCATCAGAAGCTAATCTCTGGGCC-TTAGTCATGGATGCTGGAACTGGTTTCAC 329
||||||||||||| |||||||||||||||| | | ||||||||||||| ||||||||||
Sbjct 1533 TGTGTAGCATCAGCAGCTAATCTCTGGGCCATCA-TCATGGATGCTGGGACTGGTTTCAG 1591
Query 330 TTCTCAAGTTTATAAATTTTCTTCTACCTTCCTCCCCAAGGACTGGATTATGAAACAATG 389
||||||||||||| || | || || |||||| | |||||||||||||||| |||||||
Sbjct 1592 TTCTCAAGTTTATGAACTGTCCTCGGTCTTCCTGCACAAGGACTGGATTATGGAACAATG 1651
Query 390 GGAGAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGAGCTCATTGGTCGT 449
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1652 GGAAAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGAGCTCGTTGGTTGT 1711
Query 450 TATGTCAAAAGGAACTCGTTATATCCAGCAATCATACAAAACCGGTGACTCAATTCCATT 509
|||| | |||||||||| ||||| |||||||||||||||| | | |||||| |||||||
Sbjct 1712 TATGGCTAAAGGAACTCCTTATACCCAGCAATCATACAAAGTCAGCGACTCATTTCCATT 1771
Query 510 AAAGTGGATGGATAAAAAGTGGAAAGAAGGTTTTCATGTAACATCCATGACCACGGGTGG 569
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1772 CAAGTGGATAAATAAAAAGTGGAAAGAAGGTTTTCATGTAACATCCATGACCACCGCTGG 1831
Query 570 GAGCCGTTGGGGTGTAGTAATGTCCAGGAACTCAGGCTTCTCTGAACAGGTGATGGAGGT 629
||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |
Sbjct 1832 GAGTCGTTGGGGTGTAGTAATGTCCAGGAACTCGGGCTACTCTGAACAGGTGGTGGAGCT 1891
Query 630 TGACTTTTTGAACCCAAGTGAA-GATATAAATCGAAGGTTGGAAAGTGGATACATGATAA 688
|||||||||| ||||||||||| || ||| ||||||||| |||||||||||||| |||||
Sbjct 1892 TGACTTTTTGTACCCAAGTGAAGGA-ATACATCGAAGGTGGGAAAGTGGATACAGGATAA 1950
Query 689 CATCAATGGCTGCAACAGCTGATCAAGCAGCTCTTATATTGAGTATACCTAGACGTAAAA 748
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1951 CATCAATGGCTGCAACAGCTGATCAAGCAGCTCTTATATTGAGTATACCTAAACGAAAAA 2010
Query 749 TAACCGATGAAATCCAAGAGACTTTACGCACTTCTTCCTTCCCTAGCT-CCTATGTCAAG 807
|||||||||||| |||||||||| | ||||||||| ||||||| || | || ||||||||
Sbjct 2011 TAACCGATGAAACCCAAGAGACTCTCCGCACTTCTGCCTTCCCAAG-TACCCATGTCAAG 2069
Query 808 GACAAATGGGGGAAAAATATGTTCATAACATCAATATGTTATGGTCGGACAGTTTGATAA 867
|| ||||||| |||||| ||| ||| |||||||||| ||||||||||||||||| | |
Sbjct 2070 GAGAAATGGGCAAAAAATCTGTACATTGCATCAATATGCTATGGTCGGACAGTTTGCTGA 2129
Query 868 TGAAACATGGAGCATA 883
|||||||||||| |||
Sbjct 2130 TGAAACATGGAGTATA 2145
> Ahg340491 jgi|Araly1|340491|fgenesh1_pg.C_scaffold_3000254
Length=798
Score = 706 bits (382), Expect = 0.0
Identities = 586/682 (86%), Gaps = 23/682 (3%)
Strand=Plus/Plus
Query 203 ACAACATTGCAAATTCAAG-GTTGTCGCATCATGCAGAAAAAGGTAAAAG-GGATGGCCT 260
||||| ||||| | ||||| ||| | || |||| || |||||| || | |||||||||
Sbjct 98 ACAACGTTGCAGACTCAAGACTTG-CACAGCATGTTGAGAAAGGT-AATGAGGATGGCCT 155
Query 261 TTTCATAAGCTGTGTAGCATCAGAAGCTAATCTCTGGG-CCTTAGTCATGGATGCTGGAA 319
|||| |||||||||||||||||| |||||||||||||| ||| | ||||||||||||| |
Sbjct 156 TTTCGTAAGCTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCA-TCATGGATGCTGGGA 214
Query 320 CTGGTTTCACTTCTCAAGTTTATAAATTTTCTTCTACCTTCCTCCCCAAGGACTGGATTA 379
||||||||| ||||||||||||| || | || || |||||| | ||||||||||||||
Sbjct 215 CTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCGGTCTTCCTGCACAAGGACTGGATTA 274
Query 380 TGA-AACAATGGGAGAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGAGC 438
| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 T-AGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGAGC 333
Query 439 TCATTGGTCGTTATGTCAAAAGGAACTCGTTATATCCAGCAATCATACAAAACCGGTGAC 498
|| ||||| |||||| | |||||||||| ||||| |||||||||||||||| | | ||
Sbjct 334 TCGTTGGTTGTTATGGCTAAAGGAACTCCTTATACCCAGCAATCATACAAAGTCAGCAAC 393
Query 499 TCAATTCCATTAAAGTGGATGGATAAAAAGTGGAAAGAAGGTTTTCATGTAACATCCATG 558
||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 394 TCATTTCCATTCAAGTGGATAAATAAAAAGTGGAAAGAAGGTTTTCATGTAACATCCATG 453
Query 559 ACCACGGGTGGGAGCCGTTGGGGTGTAGTAATGTCCAGGAACTCAGGCTTCTCTGAACAG 618
||||| | |||||| ||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 454 ACCACCGCTGGGAGTCGTTGGGAAGTAGTAATGTCCAGGAACTCAGGCTACTCTGAACAG 513
Query 619 GTGATGGAGGTTGACTTTTTGAACCCAAGTGAAG-ATATAAATCGAAGGTTGGAAAGTGG 677
||| ||||| ||||||||||| |||| ||||||| | ||| ||||||| | |||||||||
Sbjct 514 GTGGTGGAGCTTGACTTTTTGTACCCCAGTGAAGGA-ATACATCGAAGATGGGAAAGTGG 572
Query 678 ATACATGATAACATCAATGGCTGCAACAGCTGATCAAGCAGCTCTTATATTGAGTATACC 737
||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 573 ATACAGGATAACATCAATGGCTGCAACAGCCGATCAAACAGCTTTTATATTGAGTATACC 632
Query 738 TAGACGTAAAA-TAACCGATGAAATCCAAGAGACTT-TACGCACTTCTTCCTTCCCTAGC 795
|| ||| |||| |||||||||||| |||||||| || | ||||||||| ||||||| ||
Sbjct 633 TAAACG-AAAAGTAACCGATGAAACCCAAGAGA-TTCTCCGCACTTCTGCCTTCCCAAG- 689
Query 796 T-CCTATGTCAAGGACAAATGGGGGAAAAATATGTTCATAACATCAATATGTTATGGTCG 854
| || ||||||||| || |||||| ||| ||| |||||||||| ||||||||
Sbjct 690 TACCCATGTCAAGG------GGCA-AAAAATCTGTACATTGCATCAATATGCTATGGTCG 742
Query 855 GACAGTTTGATAATGAAACATG 876
||||||||| | | ||||||||
Sbjct 743 GACAGTTTGCTGAGGAAACATG 764
> Ahg488686 jgi|Araly1|488686|fgenesh2_kg.6__1820__AT5G18190.2
Length=2632
Score = 566 bits (306), Expect = 1e-160
Identities = 600/739 (81%), Gaps = 32/739 (4%)
Strand=Plus/Plus
Query 141 TCCTGCGTT-CCAATGGATTTCAGTCTATACCAAACGTCCTCCTATGAAACAGAGATTTC 199
|||||| || || ||||| |||||||||| |||| ||| ||||||||||||| ||
Sbjct 1678 TCCTGC-TTGTCAGTGGATCTCAGTCTATAATGCTCGTCGTCCCATGAAACAGAGATATC 1736
Query 200 ACCACAACATTGCAAATTCAAGGTTGTC-GCATCATGCAGAAAAAGGTAAAAG-GGATGG 257
|| ||||| ||||| | |||||| || | || |||| | | || ||| || | ||||||
Sbjct 1737 ACTACAACGTTGCAGACTCAAGGCTG-CACCAGCATGTACAGAAGGGT-AATGAGGATGG 1794
Query 258 CCTTTTCATAAGCTGTGTAGCATCAGAAGCTAATCTCTGGG-CCTTAGTCATGGATGCTG 316
|||||| || |||||||||||||||| |||||||||||||| ||| | | |||||||| |
Sbjct 1795 CCTTTTAATTAGCTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCA-TAATGGATGCCG 1853
Query 317 GAACTGGTTTCA-CTTCTCAAGTTTATAAATTTTCTTCTACCTTCCTCCCCAAGGACTGG 375
| ||||| |||| | |||||||||||| |||| || | |||||| | ||||||||||
Sbjct 1854 GGACTGGATTCAGC-TCTCAAGTTTATGAATTGTCGGCGGTCTTCCTTCACAAGGACTGG 1912
Query 376 ATTATGAAACAATGGGAGAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGG 435
|||||| |||||||||| ||||||||||||||||||||||||||||||| | |||| |||
Sbjct 1913 ATTATGGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTGGAGATAACGGG 1972
Query 436 AGCTCATTGGTCGTTATGTCAAAAGGAAC-TCGTTATA-TCCAGCAATCATACAAAACCG 493
||||| || || ||||||||||||||||| || ||||| || ||||||| |||||| |
Sbjct 1973 AGCTCGTTAGTTGTTATGTCAAAAGGAACGTC-TTATACTC-AGCAATCTTACAAAGTCA 2030
Query 494 GTGACTCAATTCCATTA-AAGTGGATGGATAA-AAAGTGGAAAGAAGGTTTTCATGTAAC 551
| |||||| |||| || |||||||| |||| ||| |||||||||| ||||||||| ||
Sbjct 2031 GCGACTCA-TTCCCTTTCAAGTGGATAAATAAGAAA-TGGAAAGAAGATTTTCATGTGAC 2088
Query 552 ATCCATGACCACGGGTGGGAGCCGTTGGGGTGTAGTAATGTCCAGGAACTCAGGCTTCTC 611
|||||||| || | ||||| |||||||||||||||||||| ||||| || ||||||||
Sbjct 2089 CTCCATGACAACTGCTGGGAATCGTTGGGGTGTAGTAATGTCGAGGAATTCTGGCTTCTC 2148
Query 612 TGAACAGGT-GATGGAGGTTGACTTTTTGAACCCAAGTGAAG-ATATAAATCGAAGGTTG 669
||| ||||| | ||||| | ||||||||| ||||||| || | | ||| || | |||| |
Sbjct 2149 TGATCAGGTCG-TGGAGCTCGACTTTTTGTACCCAAGCGATGGA-ATACATAGGAGGTGG 2206
Query 670 GAAAGTGGATACATGATAACATCAATGGCTGCAACAGCTGATCAAGCAGCTCTT-ATATT 728
|||||||| || | ||||||||||||||| ||||| || |||||||||||| || |||||
Sbjct 2207 GAAAGTGGGTATAGGATAACATCAATGGCAGCAACTGCAGATCAAGCAGCT-TTCATATT 2265
Query 729 GAGTATACCTAGACGTAAAATAACCGATGAAA-TCCAAGAGACT-TTACGCACTTCTTCC 786
|| |||| | ||||||||| | ||||||| || ||||||| || ||||| || ||
Sbjct 2266 AAGCGTACCAAAACGTAAAATGATGGATGAAACTC-AAGAGACCCTT-CGCACCACTGCC 2323
Query 787 TTCCCTAGCTC-CTATGTCAAGGACAAATGGGGGAAAAATATGTTCATAACATCAATATG 845
|| || ||| | | |||||||||| ||||||| ||||||| ||| ||| ||||||||||
Sbjct 2324 TTTCCAAGCACTC-ATGTCAAGGAGAAATGGGCGAAAAATCTGTACATTGCATCAATATG 2382
Query 846 -TTATGGTCGGACAGTTTG 863
|| ||| ||||||||||
Sbjct 2383 CTT-TGGGAGGACAGTTTG 2400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32900077371
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5