BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03950.3
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477648 jgi|Araly1|477648|fgenesh2_kg.3__349__AT3G03950.3 2479 0.0
> Ahg477648 jgi|Araly1|477648|fgenesh2_kg.3__349__AT3G03950.3
Length=1678
Score = 2479 bits (1342), Expect = 0.0
Identities = 1590/1704 (93%), Gaps = 40/1704 (2%)
Strand=Plus/Plus
Query 49 AAAGATCACCGCCTTACGTTAAAGGGGAAGGAAGACGAAGAAAACAAAAAAGAACGGAAC 108
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1 AAAGATCACCGCCTTACGTTAAA---G-AGGAAGACGAAGAAAACAAAAAAGAACGGAAC 56
Query 109 TTTCTAAAACCCCCCACACACCAAAAGCGctctctctctctGGGTTTTTCGAGGTTGCGT 168
||||||||| | | |||| | |||||||||||||||||||||||||||||||
Sbjct 57 TTTCTAAAA-----C-C-CACC---A---CTCTCTCTCTCTGGGTTTTTCGAGGTTGCGT 103
Query 169 TTGCTTTCATCTGCCCAACCTTC-TAG-GGTTTTCCT--TCTCTTAAAGCTTATCCCttt 224
|||||||| | ||||||| |||| || ||||| || | |||||||||||||| ||
Sbjct 104 TTGCTTTCGTTTGCCCAA-CTTCACAGACGTTTT-CTAGGGT-TTAAAGCTTATCCC-TT 159
Query 225 tttttGCCTTCTCTCGATATGGCTGGAGCCGCTTCTTCTGATCGTCTCGTCACTAGCTTC 284
||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 160 TTTTTGCCTTCTCTCGACATGTCTGGAGCCGCTTCTTCTGATCGTCTCGCCACTAGCTTC 219
Query 285 CCTCTTCTGGATACAGCAGATTTGTTTCAGGACTTGTCTTTAGGTTCAGATGCAAATGAA 344
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 220 CCTCTTCTGGAGACAGCAGATTTGTTTCAGGAGTTGTCTTTAGGTTCAGATGCAAATGAA 279
Query 345 GTTCCTATGAACTTTACTAAGGGTTCTTTTCAGCATCCGTATGGTCATGCACCTTATGGT 404
||||||| |||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 280 GTTCCTAGGAACCGTAATAAGGGTTCTTTTCAGCATCAGTATGGTCATGCACCTTATGGC 339
Query 405 GCATCTTCTCATGGAAGTGAAAGAAGGCCAAACATGAATGCTGGCAATCTGCTAAATGGT 464
||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||
Sbjct 340 GCATCTTCTCATGGAAGTGAACGAAGGCCAAATATGAATGTTGGCAATCTGCTAAATGGT 399
Query 465 GGAGACTCGATTGGTTCATACCCGTGGGGTTACATCCCAGCAAACTATCCTTCTGGTGGC 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GGAGACTCGATTGGTTCATACCCGTGGGGTTACATCCCAGCAAACTATCCTTCTGGTGGC 459
Query 525 TACCCTGATCCGAGGTTTGGTTATGACCGCAACAGCAATCACAGTTCCTTTTCACATCTC 584
||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 460 TACCCGGATCCGATGTTTGGTTATGACCGCAACAGCAATCACAATTCCTTTTCACATCTC 519
Query 585 ATGAATCCACACAGCTCACAAGAAGTACCAAGTTTTGACCAATTGGGATATAATGATCAT 644
||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 520 ATGAATCCACACAGCTCACAAGAAGCACTGAGTTTTGACCAATTTGGATATAATGATCAT 579
Query 645 TTGTATTCCAACCATGGATTGTATGGACTTTACGGGAATGTAATTGACTCTGGTCATGCA 704
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 580 TTGTATTCCAACCATGGATTGTACGGACTTTACGGGAATGTAATTGACTCTGGTCATGCA 639
Query 705 TATGGAACTTTTGGTTATGATTCCTGGAAACTTGGGCGAGGATGGTATCCCGTTGATGGT 764
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 640 TATGGAACTTTTGGCTATGATTCCTGGAAACTTGGGCGAGGATGGTATCCTGTTGATGGT 699
Query 765 TATAGAAAGACCAGAAGCTTCAATCATGGGCGTGGTTACAGTGATGAGAAAGCAGATAGG 824
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 700 TATAGAAAGACCAGAAGCTTCAATCAAGGGCGTGGGTATAGTGATGAGAAAGCAGATAGG 759
Query 825 CTTAATGAGCTATGTCGAGGACCAAGGAGTAGTGATTTCAAGAATCCACAAGTTCTTAAC 884
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 760 CTTAATGAGCTTTGTCGAGGACCAAGGAGTAGTGATTTCAAGAGTCCACAAGTTCTTAAC 819
Query 885 TCTTCAATGCTAGATGCAATGAAGCAAGACGTTTCAGCAGTAGATCTCCAGCGCTACAAT 944
|||||||||||||| |||||||||||||| |||||||| | |||||| ||||| |||||
Sbjct 820 TCTTCAATGCTAGAGGCAATGAAGCAAGATGTTTCAGCGGCAGATCTTCAGCGTTACAAC 879
Query 945 GGGGAGAATTTCCCTGAATCATTTGTGAAAGCAAAATTCTTTGTGATCAAGTCATACAGC 1004
|||||||||||||||||| |||| |||||||| |||||||||||||||||||| |||||
Sbjct 880 GGGGAGAATTTCCCTGAAACATTCGTGAAAGCTAAATTCTTTGTGATCAAGTCTTACAGT 939
Query 1005 GAAGATGATGTTCATAACTGTATTAAGTATGGTGCATGGTCGAGCACACCAACTGGCAAC 1064
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GAAGATGATGTTCATAACAGTATTAAGTATGGTGCATGGTCGAGCACACCAACTGGCAAC 999
Query 1065 AAGAAGTTGAATGCTGCATATTATGAAGCCAAAGAAAACT-CCCAAGAATGCCCTGTGTA 1123
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1000 AAGAAGTTGCATGCTGCATATTATGAAGCCAAAGAAAA-TGCCCAAGAATGCCCTGTGTA 1058
Query 1124 TCTTCTGTTCTCGGTGAATGCAAGTGGGCAATTTGTTGGTCTTGCGGAGATGGTAGGCCC 1183
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1059 TCTTCTGTTCTCGGTGAATGCAAGTGGGCAATTTGTCGGTCTTGCAGAGATGGTAGGCCC 1118
Query 1184 TGTTGATTTCAACAAGACAATGGAGTATTGGCAGCAAGATAAATGGATTGGTTGTTTCCC 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 TGTTGATTTCAACAAGACAATGGAGTATTGGCAGCAAGATAAATGGATTGGTTGTTTCCC 1178
Query 1244 TGTGAAGTGGCATATCATCAAAGACATACCAAACAGTCTCTTAAGACACATTACCCTGGC 1303
|||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 1179 TGTGAAGTGGCATATCATCAAAGACATACCAAACAGTCTCTTGAGACACATAACACTTGC 1238
Query 1304 GAATAACGAGAACAAGCCTGTCACTAATAGCAGAGACACTCAAGAGGTGAATCTGGAGCA 1363
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1239 GAATAATGAGAACAAGCCAGTCACTAATAGCAGAGACACTCAAGAGGTTAATCTGGAGCA 1298
Query 1364 TGGGACCAAGATCATAAAGATCTTCAAGGAGTATATGAGCAAGACATGTATACTTGATGA 1423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 TGGGACTAAGATCATAAAGATCTTCAAGGAGTATATGAGCAAGACATGTATACTTGATGA 1358
Query 1424 TTACAAGTTCTATGAGACAAGGCAGAAGATCATCAGAGACAAGAAGATCAAGCAAAAGAA 1483
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1359 TTACAAGTTCTATGAGACAAGGCAAAAGATCATCAGAGATAAGAAGATCAAGCAAAAGAA 1418
Query 1484 ACAGGCCCTTGATGGAGCTTCGGGGGAAACAATTAACTTGAGTTGAAAGATGGAATCAAT 1543
||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| ||
Sbjct 1419 ACAGGCCCTTGATGGAGCTTCCGGGGAAACAATTAACTTGTGTTGAAAGCTGGAATCGAT 1478
Query 1544 GCAAGGAAAGAAGAAGATGACTTAATTAAAAGAACTTAGTTTT-GAATTATGTTTTTTCT 1602
|||||||||||||| |||||||||||||||||||||||||| | || ||||||| ||
Sbjct 1479 GCAAGGAAAGAAGA---TGACTTAATTAAAAGAACTTAGTTTTTGGATCATGTTTTCCCT 1535
Query 1603 TCAGGGTTGGGATTTCTAAAAACCTAATACACA--TCTTTAATCTGTGTGTT-T-TCT-C 1657
|||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||| |
Sbjct 1536 TCAGGGTTTGGATTTCTAAAAACCTAATACACACATCTTTAATCTGTGTGTTCTCTCTGC 1595
Query 1658 TGCT--T-ATCTAAACAAAACTTACATTGTCTTTTGTTCCTCTTAAGGGGACGCACATCT 1714
|||| | |||||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 1596 TGCTGCTTATCTAAACAAAACTGACATTGTCTTTTGTTCCTTTTAAGGG-ACGCACATCT 1654
Query 1715 GATAAAACAAAAACTCAGGCTTTC 1738
||||||| ||||||||| ||||||
Sbjct 1655 GATAAAATAAAAACTCATGCTTTC 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66467477525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5