BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03970.1
Length=1946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340556 jgi|Araly1|340556|fgenesh1_pg.C_scaffold_3000319 2573 0.0
Ahg474709 jgi|Araly1|474709|fgenesh2_kg.1__4663__AT1G54385.2 58.4 2e-07
> Ahg340556 jgi|Araly1|340556|fgenesh1_pg.C_scaffold_3000319
Length=1668
Score = 2573 bits (1393), Expect = 0.0
Identities = 1581/1672 (95%), Gaps = 11/1672 (1%)
Strand=Plus/Plus
Query 135 ATGGGAAGAAATCTTGGTTCGGCATTTAGACAAGAGTTGGCTAATCTTGACAAAGATCCA 194
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAGAAATCTTGGTTCGGCATTTAGACAAGAGTTGGCTAATCTTGACAAAGATCCT 60
Query 195 GATTCCCACAAGACTGCAATGAGCAATTTGAGATCGATTGTGAAAGATTTGGATGCAAAG 254
|||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 61 GATTCCCACAAGGCTGCAATGAGAAATTTGAGATCGATTGTTAAAGATTTGGATGCAAAT 120
Query 255 GTGGTTCATGTTTTTGTTGCTCAACTTTCTGATGTCAAAGAGATTGGGTT-GGAGTCTGG 313
||| ||||||| |||||| |||| |||||||| |||||||||||| |||| ||||||||
Sbjct 121 GTGATTCATGTGTTTGTTTCTCAGCTTTCTGAAGTCAAAGAGATT-GGTTCTGAGTCTGG 179
Query 314 TGGTTACACTGTATCTCTCTTTGAAGACCTTGCTCGTGCTCATGGAG-TCAAGATTGCTC 372
||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 180 TGGTTACACAGTTTCTCTCTTTGAAGACCTTGCTCGTGCTCATGGAGTTCAA-ATTGCTC 238
Query 373 CTCATATAGACATTATCATGCCGGCGATTATAAGAACATTGAGCTCCAGTGAAGGGTCTT 432
|||| |||||||||||||| ||||||| ||||| |||||||| |||||||||||||||
Sbjct 239 CTCACGTAGACATTATCATGTCGGCGATCATAAGGACATTGAGTTCCAGTGAAGGGTCTC 298
Query 433 TACGTGTTCAACAGGCTTGCTCAAGGGCAGTAGCTGCTATGGCTAGATATGGAATTGATC 492
||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 299 TACGTATTCAACAGGCTTGCTCAAAGGCGGTAGCTGCTATGGCTAGATATGGAATTGATC 358
Query 493 CTACAACACCAGAAGATAAGAAAACGAATGTGATTCATTCTCTTTGCAAGCCACTCTCTG 552
|||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 359 CTACAACACCGGAAGATAAGAAAATGAATGTGGTTCATTCTCTTTGTAAGCCACTCTCTG 418
Query 553 ATTCTCTTATAGATTCGCAACATCAACAGCATCTTGCTTTGGGATCTGCTCTTTGCTTGA 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATTCTCTTATAGATTCGCAACATCAACAGCATCTTGCTTTGGGATCTGCTCTTTGCTTGA 478
Query 613 AGTCACTTGTGGATTGCGATAATTGGCGATCTGCTTCTAGTGAAATGGTTAATAATGTTT 672
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 AGTCACTTGTGGATTGCGATAATTGGCGATCTGCTTCTCGTGAAATGGTTAATAATGTTT 538
Query 673 GTCAAAGCTTAGCTGTTGCTCTTGAAGCTACTTCAAGTGAAGCTAAGTCTCATATGGCAC 732
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 GTCAAAGCTTAGCTGTTGCTCTTGAAGCCACTTCAAGTGAAGCTAAGTCTCATATGGCAC 598
Query 733 TTGTTATGGCACTTTCCAAGCACAATCCTTTTACTGTCGAGGCATATGCAAGGCTTTTTG 792
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 599 TTGTCATGGCACTTTCCAAGCACAACCCTTTTACTGTCGAAGCATATGCAAGGCTTTTTG 658
Query 793 TGAAGTCGGGTCTGAGGATTCTGGATTTAGGTGTTGTTGAGGGAGATTCTCAGAAACGGC 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAAGTCGGGTCTGAGGATTCTGGATTTAGGTGTTGTTGAGGGAGATTCTCAGAAACGGC 718
Query 853 TTTTAGCTATACAGATGCTCAACTTTCTGATGAAGAATCTGAATCCCAAGAGTATTTCTT 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 TTTTAGCTATACAGATGCTCAACTTTCTGATGAAGAATCTGAATCCCAAGAGTATTTGTT 778
Query 913 CTGAGTTAGAGCTTATATATCAAGAGATGGAGAAATACCAAAAAGATCAG---CATTATG 969
||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 779 CTGAGTTGGAGCTTATATATCAAGAGATGGAGAAACACCAAAAAGATCAGATGCATTATG 838
Query 970 TCAAAATGGCAGCTCATGAAACCATGAGACAAGCAGAGAGATTAATATGTGAGGCAGATC 1029
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 TCAAAATGGCAGCTCATGAAACCATGAGACAAGCAGAGAGATTAATAGGTGAGGCAGATC 898
Query 1030 CGATGTTTGATGCAGAGAACTGCAAGCCCCGAAA-CTCGCTCAGCGGATCAGTCAAGTCT 1088
| |||||||| ||||||||||||||||||| ||| |||| ||||||||||| ||||||||
Sbjct 899 CAATGTTTGACGCAGAGAACTGCAAGCCCC-AAATCTCGTTCAGCGGATCAATCAAGTCT 957
Query 1089 ACATCAAGTCTGCGAGAACATGATGGGAGTGTCTATAGTAGACAAGATAGGAGTTATGTA 1148
||| |||||||||||| | |||||| |||||| ||||| ||| ||| |||||||||||
Sbjct 958 ACACCAAGTCTGCGAGCAGATGATGAGAGTGTTTATAGGAGAGGTGATGGGAGTTATGTA 1017
Query 1149 AACGATCAAGACGAGTATGATGTTTTGTTTTCTGGTGTAGCCAGTGGAAGAACTCTTGTC 1208
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1018 AATGATCAAGACGAGTATGATGCTTTGTTTTCTGGTGTAGCCAGTGGAAGAACTCTTGTC 1077
Query 1209 TCAGGCTCTCCTCTGGTGACTTTCGGAGACAATAACCAAGAAACTGGTTTTGTTATCGAG 1268
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 1078 TCAGGCTCTCCTCTGGTGACTTTCGGAGACAATAACCAAGAAACTGATGTTGTGATCGAG 1137
Query 1269 AGTCCAAGAATTGGAGATCAGATTCAATGTTCTGGTGTTGAAAATGGCAACATTGAGTCA 1328
|||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 1138 AGTCCAAGAATTGGAGATCAGATTCAATGTTCTGGTGTTGAAGATGACAAGATTGAGTCA 1197
Query 1329 GTTTGGTTCCATCAGCGGAACAGAAGCTCCGAGTTTAATGAATCTGTGTGCTCTAGGACC 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTTTGGTTCCATCAGCGGAACAGAAGCTCCGAGTTTAATGAATCTGTGTGCTCTAGGACC 1257
Query 1389 AACCGCTCAAGAAGTTCAAGACGAAACACCAAGAAGAGACAATCAGGAGACATTTGTTCA 1448
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1258 AATCGCTCAAGAAGTTCAAGACGAAACACCAAGAAGAGACAATCAGGTGACATCTGTTCA 1317
Query 1449 AAACATCACAGGCATGGTTTCGCACAAGATCCATTCACTGAGTTACTAGATAACAGACAG 1508
||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1318 AAACACCACAGGCATGGTTTCACACAGGATCCATTCACTGAGTTACTAGATAACAGACAG 1377
Query 1509 CAGCTGCTACAGTACAGTGAAACCTCGTCATCATCATCAATATATGATACCTCTGGTACT 1568
||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1378 CAGCTGCAACAGTACAGTGAAAGCTCATCATCATCATCAATATATGATACCTCTGGTACT 1437
Query 1569 ACAACTCCAACCAACACAACAGAAGATATCTGTGAGAAACCAAAAACAGATTTGGATTCT 1628
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1438 ACTACTCCAACCAACACAACAGAAGATATCTGTGAGAAACCAAAGTCAGATTTGGATTCT 1497
Query 1629 GAGGCCAAACTTAAGACAGTGGAGACTGAACTAGACCCACGTC-TGGGACGGAGCAAGGG 1687
||||| |||||||||||| |||||||||| |||||||||||| ||| |||||||||| |
Sbjct 1498 AAGGCCGAACTTAAGACAGGGGAGACTGAAATAGACCCACGTCATGG-ACGGAGCAAGCG 1556
Query 1688 TGTGTTAAAATTGGGATTGAGTGTCTTCTCTATTGCAGTTGCAGGGTTTGCTTCTTTCAT 1747
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TGTGTTAAAATTGGGATTGTGTGTCTTCTCTATTGCAGTTGCAGGGTTTGCTTCTTTCAT 1616
Query 1748 GTGGATGTATCTCCAGGATGATATGATGCCTCCTCATCTTGTTCCGACTTAA 1799
||||||| ||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1617 GTGGATGCATCTCCAGGATGATATGATGCTTCCTCACCTTGTTCCGACTTAA 1668
> Ahg474709 jgi|Araly1|474709|fgenesh2_kg.1__4663__AT1G54385.2
Length=1991
Score = 58.4 bits (31), Expect = 2e-07
Identities = 298/420 (71%), Gaps = 45/420 (11%)
Strand=Plus/Plus
Query 163 GACAAGAGTTGGCTAATCTTGACAAAGATC-CAGAT--TCCCACAAGACTGCAATGA--G 217
|||||||||||||||||||||||||||| | |||| || | || | ||||||| |
Sbjct 251 GACAAGAGTTGGCTAATCTTGACAAAGA-CACAGAGAGTCGTA-AAT-CAGCAATGAAAG 307
Query 218 CAATTTGAGATCG-ATTGTGAAAGATTTGGATGCAAAGG-TGGTTCATGTTTTTGTTGCT 275
| || | ||| || ||||| || |||||| |||||| | ||| || |||| | |||
Sbjct 308 CTCTTA-A-ATCTTAT-GTGAAGGACTTGGATTCAAAGGCTA-TTCCTGGTTTTCTAGCT 363
Query 276 CAACTTT-CTGATGTC-AAAGAGATTGGGT-TGGAGTCTGGTGGTTACACTGTATCTCTC 332
||| ||| | || | | ||||| | | | ||| |||| ||||| | || || |
Sbjct 364 CAAGTTTTC-GA-GACTAAAGAAACCAACTCTTT-GTCCGGTGAATACAC-G-ATTTCGC 418
Query 333 TTT--GAAG-ACCTTGCTCGTGCTCATGGAG-TCAAGATTGCTCCTCATATAGACATTAT 388
||| ||| || ||||||||| ||||||| | || |||| |||||| || || | ||
Sbjct 419 TTTATGAAATAC-TTGCTCGTGTTCATGGACCT-AACATTGTTCCTCAGATTGATACAAT 476
Query 389 CATG-CCGGCGATTAT-AAGAACATTGAGCTCCA-GTGAAGGGTCTTTACGTGTTCAACA 445
|||| || | ||| | |||| | ||| ||| || ||| || ||||| | | |||||||
Sbjct 477 CATGTCCA-CTATTGTCAAGA-CTTTG-GCTTCAAGTGCTGGTTCTTTCCCTCTTCAACA 533
Query 446 GGCTTGCTC-AAGGGCAGTAGCTGCTATGGCTAGATATGGAATTGATCCTACAAC-ACCA 503
||||| || || | | | | || || ||| ||||||| || ||||| ||||| | |
Sbjct 534 AGCTTGTTCGAAAGTTATTC-CGGCAATTGCTCGATATGGGATCGATCCGACAACTAA-A 591
Query 504 GAAGATAAGAAAACGAATG-TGATTCATTCTCTT-TGCAAGCCACTCT--CTGATTCTCT 559
|| || |||||| ||| | | || || ||| || || |||||| ||| | ||||||||
Sbjct 592 GACGACAAGAAA-CGAGTTATAATCCACTCT-TTGTGTAAGCCA-TCTTACGGATTCTCT 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73133270400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5