BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03980.1
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927934 jgi|Araly1|927934|scaffold_300391.1 1327 0.0
Ahg317277 jgi|Araly1|317277|fgenesh1_pm.C_scaffold_3000293 231 5e-60
> Ahg927934 jgi|Araly1|927934|scaffold_300391.1
Length=853
Score = 1327 bits (718), Expect = 0.0
Identities = 811/856 (95%), Gaps = 6/856 (1%)
Strand=Plus/Plus
Query 25 CTCATTGAATTCAAATCGTTATGTCTACACATTCATCAATCTCGCAACCGCCGCTTCCTC 84
|||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||| |
Sbjct 1 CTCATTGAATTCGAATCGTTATGGCTACACAGTCATCAATTTCGCAACCGCCGCTTCCAC 60
Query 85 TCGCCGGAAGAGTCGCCATTGTCACCGGCTCTTCCCGTGGTATTGGCCGAGCGATAGCGA 144
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 61 TCGCCGGAAGAGTCGCCATTGTCACCGGCTCTTCTCGTGGTATTGGTCGAGCGATAGCGA 120
Query 145 TCCACTTAGCTGAACTCGGTGCGAGGATTGTTATCAACTACACCTCTAAAGCCGCAGACG 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCACTTAGCTGAACTCGGTGCGAGGATTGTTATCAACTACACCTCTAAAGCCGCAGACG 180
Query 205 CCGAGCGTGTCGCGTCGGAGATCAATGATTTTCCAGTTAGGGAAGAAATCACTGGAAAGG 264
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 CCGAGCGTGTCGCGTCGGAGATCAATGATTTTCCAGTTAGGGAAGAAATCACTGGAAAAG 240
Query 265 GACCAAGAGCTATTGTGGTTCAGGCCAATGTCTCTGAGCCAAGCCAGGTTAAATCAATGT 324
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||
Sbjct 241 GACCAAGAGCTATTGTGGTTCAGGCCAATGTCTCCGAGCCAAGTCAGGTGAAATCGATGT 300
Query 325 TTGATGCGGCGGAGAGTGCCTTTGAAGCGCCGGTTCACATTCTGGTTAACTCTGCTGGGA 384
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 TTGATGCGGCGGAGCGTGCCTTTGAAGCGCCGGTTCACATTCTGGTTAACTCTGCTGGAA 360
Query 385 TTCTCGATCCAAAGTACCCTACGATCGCAGACACATCAGTCGAAGATTTCGATCATACGT 444
| |||||||| ||||||||| |||| |||||||||||||||||||||||||||| || |
Sbjct 361 TCCTCGATCCTAAGTACCCTGCGATTGCAGACACATCAGTCGAAGATTTCGATCGCACCT 420
Query 445 TCAGTGTCAACACAAAAGGAGCGTTCCTGTGTAGCAAGGAAGCTGCCAATAGGCTAAAAC 504
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 TCAGTGTCAATACAAAAGGAGCGTTTCTGTGTAGCAAGGAAGCTGCCAATAGGCTAAAAC 480
Query 505 AAGGAGGTGGTGGTCGGATCATACTTCTGACATCTTCC-CAGACTCGATCTTTAAAGCCA 563
||||||||||||||||||||||||| |||||||||||| | ||| ||||| || | | ||
Sbjct 481 AAGGAGGTGGTGGTCGGATCATACTCCTGACATCTTCCAC-GACCCGATCCTTGA-GACA 538
Query 564 GGG-TTTGGTGCCTATGCCGCATCAAAGGCAGCTGTGGAAACTATGGTCAAGATTCTTGC 622
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 539 GGGCTTTGGTGCCTATGCAGCATCAAAAGCAGCTGTGGAAACTATGGTCAAGATTCTTGC 598
Query 623 AAAAGAGCTCAAAGGAACAGGAATCACTGCAAACTGTGTTGCTCCAGGACCCATCGCCAC 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAAAGAGCTCAAAGGAACAGGAATCACTGCAAACTGTGTTGCTCCAGGACCCATCGCCAC 658
Query 683 TGAGATGTTCTTTGATGGAAAGACCCCAGAGTTGGTGGAAAAGATAGCCGCAGAGTCTCC 742
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 659 TGAGATGTTCTTTGATGGAAAAACCCCGGAGTTGGTGGAAAAGATAGCCGCAGAGTCCCC 718
Query 743 CTTTGGGAGGGTCGGCGAAGCCAAAGACGTGGTGCCTCTTGTTGGATTCTTGGCTGGTGA 802
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 719 CTTTGGGAGGGTCGGTGAAGCCAGAGACGTGGTGCCTCTTGTTGGATTCTTGGCTGGTGA 778
Query 803 CGGTGGTGAATGGGTCAATGGTCAAATCATTCCTGTTAATGGTGGATATGTATAAAAGAG 862
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 779 TGGTGGTGAATGGGTGAATGGTCAAATCATTCCTGTTAATGGTGGATATGTGTAAAAG-G 837
Query 863 TTCG-TCTTGAGAGGA 877
|| | |||||||||||
Sbjct 838 TTTGGTCTTGAGAGGA 853
> Ahg317277 jgi|Araly1|317277|fgenesh1_pm.C_scaffold_3000293
Length=825
Score = 231 bits (125), Expect = 5e-60
Identities = 441/590 (75%), Gaps = 36/590 (6%)
Strand=Plus/Plus
Query 276 ATTGTGGTTCAGGCCAATGTCTCTGAGCCAAGCCAGGTTAAA-TCAATGTTT-GATGCGG 333
|||||||| |||| || |||| ||||| ||||||| |||| | | ||| |||| ||
Sbjct 241 ATTGTGGTGAAGGCTGATATCTCGGAGCCGAGCCAGG-TAAAGTTGCT-TTTCGATGAGG 298
Query 334 CGGAGAGTGCCTTTGAAG-CGCCGGTTCACATTC-TGGTTAACTCTGCTGGGAT-TCTCG 390
| ||| | | ||| | || | |||||||| | || |||||||||| || | || | ||
Sbjct 299 CAGAGCGAGTCTTCG-AGTCACCGGTTCATA-TCTTGGTTAACTCAGCCGCTATAGC-CG 355
Query 391 ATCCAAAGTA-CCCTACGATCGCAGACACATCAGTCGAAGATTTCGATCATACGT-TCAG 448
|||| || | || || ||| |||| | |||||| ||| ||| |||| | | ||||
Sbjct 356 ATCCTAACCATTCC-ACTATCTCAGATATATCAGTAGAACTTTTTGATCGCA-TTATCAG 413
Query 449 TGTCAACACAAAAGGAGCGTTCCTGTGTAGCAAG-GAAGCTGCCAATAGGCTAAAACAAG 507
||||||||||| ||| ||||| || ||| || || |||||||| || |||||||||| |
Sbjct 414 TGTCAACACAAGAGGTGCGTTTCTTTGT-GCTAGAGAAGCTGCGAACAGGCTAAAACGTG 472
Query 508 GAGGTGGTGGTCGGATCATACTTCTGACATCTTCCCAGACTCGATCTTTAAAGCCAGGGT 567
|||| ||||| ||||| || || || || |||| | | || ||||||||| ||| |
Sbjct 473 GAGGCGGTGGCCGGATAATTCTCCTCTCAACTTCACTGGTTCAATCTTTAAATCCA-TAT 531
Query 568 T-TGG-TGCCTATGCCGCATCAAAGGCAGCTGTGGAAACTATGGTCAAGATTCTTGCAAA 625
| ||| | | || | || ||||||| ||| || ||| |||||| |||||||||||||||
Sbjct 532 TATGGCT-CATACACGGCTTCAAAGGGAGCCGTAGAAGCTATGGCCAAGATTCTTGCAAA 590
Query 626 AGAGCTCAAAGGAACAGGAATCACTGCAAACTGTGTTGCTCCAGGACCCATCGCCACTGA 685
||||||||||||||||| |||||| | ||| |||||| |||| |||||| ||||||| ||
Sbjct 591 AGAGCTCAAAGGAACAGAAATCACAGTAAATTGTGTTTCTCCCGGACCCGTCGCCACAGA 650
Query 686 GATGTTCTTTG-ATGGA--AAGACCCCAGAG-TTGGTGGA-AAAG-ATAGCCGCAGAGTC 739
|||||| ||| | ||| ||| | ||| ||| | || |||| | || | |||| |
Sbjct 651 GATGTTTTTTACA-GGATTAAG-CAAT-GAGGTTG-TAGAGAAAGTAAAGTCACAGAA-C 705
Query 740 TCCCTTTGGGAGGGTCGGCGA-AGCCAAAGACGTGGTGCCTCTTGTTGGATTCTTGGCTG 798
| ||||| ||| |||| || | |||||||| | | ||| ||||||| ||||| ||
Sbjct 706 TTA-TTTGGTAGGATCGGTGAGA-CCAAAGACATCGCACCTGTTGTTGGGTTCTTAGCCA 763
Query 799 GTGACGGTGGTGAATGGGTCAATGGTCAAATCATTCCT-GTTAATGGTGG 847
|||| | ||| |||||| |||| |||||| |||| | | | |||||||||
Sbjct 764 GTGATGCTGGCGAATGGATCAACGGTCAAGTCAT-CATTGCTAATGGTGG 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36521754486
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5