BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03990.1
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477656 jgi|Araly1|477656|fgenesh2_kg.3__357__AT3G03990.1 1389 0.0
> Ahg477656 jgi|Araly1|477656|fgenesh2_kg.3__357__AT3G03990.1
Length=1096
Score = 1389 bits (752), Expect = 0.0
Identities = 796/818 (97%), Gaps = 0/818 (0%)
Strand=Plus/Plus
Query 17 aaaaaTGAGTCAACACAACATCTTAGAAGCTCTAAATGTCCGGGTCGTGGGTACGGGTGA 76
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATGAGTCAACACAACATCTTAGATGCTCTAAATGTCCGGGTCGTGGGTACGGGTGA 60
Query 77 TCGGATCCTGTTTTTGGCCCATGGATTCGGTACTGACCAATCAGCTTGGCACTTGATCCT 136
||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TCGGATCCTGTTTCTAGCCCATGGATTCGGTACTGACCAATCAGCTTGGCACTTAATCCT 120
Query 137 TCCTTACTTCACTCAAAACTACAGAGTCGTCCTCTATGACCTAGTTTGCGCCGGCAGTGT 196
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCTTACTTCACCCAAAACTACAGAGTCGTCCTCTATGACCTAGTTTGCGCCGGCAGTGT 180
Query 197 CAACCCCGATTACTTCGATTTCAATCGTTACACAACTCTCGATCCTTACGTCGATGATCT 256
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAATCCCGATTACTTCGATTTCAATCGTTACACAACTCTCGATCCTTACGTCGATGATCT 240
Query 257 TCTCAACATCGTTGATTCACTCGGAATCCAAAACTGTGCTTACGTTGGTCACTCTGTTTC 316
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTCGACATCGTCGATTCACTCGGAATCCAAAACTGTGCTTACGTTGGTCACTCTGTTTC 300
Query 317 CGCTATGATCGGAATCATCGCTTCGATTCGTCGGCCGGAGCTTTTCTCCAAGCTTATCTT 376
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 CGCTATGATCGGAATCATCGCTTCGATTCGTCGGCCGGAGCTTTTCTCGAAGCTTATCTT 360
Query 377 GATCGGATTTTCGCCTAGGTTTCTCAACGACGAGGATTATCATGGAGGATTCGAAGAAGG 436
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 361 GATCGGATTTTCACCTAGGTTTCTCAACGACGAGGATTACCACGGAGGATTCGAAGAAGG 420
Query 437 TGAGATTGAGAAAGTTTTCTCAGCTATGGAAGCTAATTACGAAGCTTGGGTTCATGGATT 496
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGAGATCGAGAAGGTTTTCTCAGCTATGGAAGCTAATTACGAAGCTTGGGTTCATGGATT 480
Query 497 TGCTCCGCTTGCTGTTGGAGCTGATGTTCCGGCGGCGGTTAGAGAATTTAGCCGGACTTT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGCTCCGCTTGCTGTTGGAGCTGATGTTCCGGCGGCGGTTAGAGAATTTAGCCGGACTTT 540
Query 557 GTTTAATATGCGTCCGGATATATCTCTGTTTGTTTCGAGGACGGTTTTCAACAGCGATCT 616
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTTAATATGCGTCCGGATATTTCTCTGTTTGTTTCGAGGACGGTTTTCAACAGCGATCT 600
Query 617 GAGAGGTGTGCTTGGGTTAGTTAGAGTTCCGACGTGTGTGATTCAGACGGCGAAGGATGT 676
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 GAGAGGTGTGCTCGGGTTAGTTAGAGCTCCGACGTGTGTGATTCAGACGGCGAAGGATGT 660
Query 677 TTCTGTGCCGGCTTCGGTGGCGGAGTATCTTAGGTCTCATCTCGGTGGAGATACTACTGT 736
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTCGGTGCCGGCTTCGGTGGCGGAGTATCTTAGGTCTCATCTCGGTGGAGATACTACTGT 720
Query 737 GGAGACTCTTAAAACTGAAGGACATTTGCCGCAGCTTAGTGCTCCGGCGCAGCTTGCTCA 796
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 GGAGACGCTTAAAACTGAAGGACATTTGCCGCATCTTAGTGCTCCGGCGCAGCTTGCTCA 780
Query 797 GTTTCTCCGGCGAGCTCTTCCTCGGTGACttttttttA 834
|||||||||||||||||||||||||||||| |||||||
Sbjct 781 GTTTCTCCGGCGAGCTCTTCCTCGGTGACTCTTTTTTA 818
Score = 313 bits (169), Expect = 2e-84
Identities = 254/290 (88%), Gaps = 25/290 (9%)
Strand=Plus/Plus
Query 862 TAATTGGTGGAATATGGGTTTAGTGGGGTCCACGTATCGAAGAAAAGAAGGGCCTCTATT 921
||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 817 TAATTGGAGGAATATGGGATTAGTGGGGTCCACGTAGCGAAGAAAAGAAGGGCCTCTATT 876
Query 922 TGTGGAGGACAGTTTGGCATTGTCACAAATCTAGTAA---GATAAGATTGTTCACTTGAC 978
||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 877 TGTGGAGTACAGTTTGGCATTGTCACAAATCTAGTAATAAGATAAGATTGTTCACATGAC 936
Query 979 ACGTGACTTTCGCTTTT-T-TATCACtt-tt---tttCT-T-GCTCTCTTCATTAGTTTA 1030
|||||||| |||| ||| | |||||||| || ||||| | |||||||| |||||||||
Sbjct 937 ACGTGACTATCGCATTTATATATCACTTCTTCACTTTCTCTTGCTCTCTTGATTAGTTTA 996
Query 1031 -T-AATCACAAGTTTATTTCATAA-AATAATTGG-AGAATAACCaaaaaaaacattaaaa 1086
| |||||||||||||||| | || ||||||||| |||||||| ||| || ||||||||
Sbjct 997 ATTAATCACAAGTTTATTTTA-AAGAATAATTGGCAGAATAAC-AAACAA--CATTAAAA 1052
Query 1087 aaTCCTATCTTATCTTTTACTTTCCTCTGAATATTTCTATCCATATTGTT 1136
| || | | |||||||||||||||||||||||||| ||||||||||||
Sbjct 1053 A-TC-T-T---ATCTTTTACTTTCCTCTGAATATTTCCATCCATATTGTT 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42468929538
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5