BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04000.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317277 jgi|Araly1|317277|fgenesh1_pm.C_scaffold_3000293 1236 0.0
Ahg927934 jgi|Araly1|927934|scaffold_300391.1 193 3e-48
> Ahg317277 jgi|Araly1|317277|fgenesh1_pm.C_scaffold_3000293
Length=825
Score = 1236 bits (669), Expect = 0.0
Identities = 776/827 (94%), Gaps = 10/827 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGCAGCGTCATCAGTTTCTTCTCCACCGCTTTGCCTCGCCGGTCGAGTAGCTATA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGGCTGCAGCGTCATCAGTTTCTTCTCCACCGCTTTGCCTCGCCGGCCGAGTCGCTATA 60
Query 61 GTCACAGGATCTTCTCGAGGAATAGGTCGTGCCATAGCCATCCACCTTGCCGAGCTTGGG 120
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTCACCGGATCCTCTCGAGGAATAGGCCGTGCCATAGCCATCCACCTTGCCGAGCTTGGG 120
Query 121 GCTAGGGTCGTCGTTAATTACTCAACTAGCCCCGTTGAGGCTGAGAAGGTTGCCACGGCG 180
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 121 GCTAGGATCGTCGTTAATTACTCTACTAGCCCCGTTGAGGCTGAGAAGGTTGCGACGGCG 180
Query 181 ATTACCA-CCAACTGTTCAAAG---GACG---CGGAAGTCGCCGGCAAA-AGTCCACGTG 232
|||| || |||||||| ||||| |||| ||||||||||||| ||| ||||||||||
Sbjct 181 ATTA-CATCCAACTGTCCAAAGAACGACGCTTCGGAAGTCGCCGG-AAATAGTCCACGTG 238
Query 233 TCATTGTGGTGAAGGCTGATATCTCAGAGCCGAGCCAGGTAAAGTCGCTTTTCGATGAGG 292
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 239 TCATTGTGGTGAAGGCTGATATCTCGGAGCCGAGCCAGGTAAAGTTGCTTTTCGATGAGG 298
Query 293 CAGAGCGAGTCTTCGAGTCGCCGGTTCATATCTTGGTTAACTCAGCGGCTATAGCCGATC 352
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 299 CAGAGCGAGTCTTCGAGTCACCGGTTCATATCTTGGTTAACTCAGCCGCTATAGCCGATC 358
Query 353 CTAATCATTCCACTATCTCAGACATGTCAGTAGAACTTTTTGATCGCATTATCAGTGTGA 412
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 359 CTAACCATTCCACTATCTCAGATATATCAGTAGAACTTTTTGATCGCATTATCAGTGTCA 418
Query 413 ACACAAGAGGTGCGTTTATTTGTGCTAGAGAAGCTGCGAATAGGCTAAAACGTGGAGGCG 472
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 ACACAAGAGGTGCGTTTCTTTGTGCTAGAGAAGCTGCGAACAGGCTAAAACGTGGAGGCG 478
Query 473 GTGGCCGGATAATTCTCCTCTCAACATCACTGGTTCAAACCTTAAATACAAACTATGGCT 532
||||||||||||||||||||||||| |||||||||||| | |||||| || | |||||||
Sbjct 479 GTGGCCGGATAATTCTCCTCTCAACTTCACTGGTTCAATCTTTAAATCCATATTATGGCT 538
Query 533 CATACACGGCTTCAAAGGCAGCCGTAGAAGCCATGGCCAAGATTCTTGCAAAAGAGCTCA 592
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 CATACACGGCTTCAAAGGGAGCCGTAGAAGCTATGGCCAAGATTCTTGCAAAAGAGCTCA 598
Query 593 AAGGAACAGAGATCACAGTTAACTGTGTTTCTCCGGGTCCCGTCGCCACAGAAATGTTTT 652
|||||||||| |||||||| || ||||||||||| || |||||||||||||| |||||||
Sbjct 599 AAGGAACAGAAATCACAGTAAATTGTGTTTCTCCCGGACCCGTCGCCACAGAGATGTTTT 658
Query 653 ACACAGGATTGAGCAATGAGATTGTTGAGAAAGTTAAGTCACAGAACTTATTTGGTAGGA 712
|||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 659 TTACAGGATTAAGCAATGAGGTTGTAGAGAAAGTAAAGTCACAGAACTTATTTGGTAGGA 718
Query 713 TCGGTGAGACCAAAGACATCGCACCTGTTGTTGGGTTCTTAGCCAGTGATGCTGGCGAAT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCGGTGAGACCAAAGACATCGCACCTGTTGTTGGGTTCTTAGCCAGTGATGCTGGCGAAT 778
Query 773 GGATCAACGGTCAAGTCATCATGGCTAATGGTGGCTGTCTCTTGTAA 819
|||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 779 GGATCAACGGTCAAGTCATCATTGCTAATGGTGGCTCTCTCTTGTAA 825
> Ahg927934 jgi|Araly1|927934|scaffold_300391.1
Length=853
Score = 193 bits (104), Expect = 3e-48
Identities = 437/593 (74%), Gaps = 42/593 (7%)
Strand=Plus/Plus
Query 235 ATTGTGGTGAAGGCTGATATCTCAGAGCCGAGCCAGGT-AAAGTCGCT-TTTCGATGAGG 292
|||||||| |||| || |||| ||||| || ||||| ||| ||| | ||| |||| ||
Sbjct 252 ATTGTGGTTCAGGCCAATGTCTCCGAGCCAAGTCAGGTGAAA-TCGATGTTT-GATGCGG 309
Query 293 CAGAGCGAGTCTTCG-AGTCGCCGGTTCATA-TCTTGGTTAACTCAGC-GGCTATAGC-C 348
| ||||| | ||| | || |||||||||| | || |||||||||| || || || | |
Sbjct 310 CGGAGCGTGCCTTTGAAG-CGCCGGTTCACATTC-TGGTTAACTCTGCTGG-AAT-CCTC 365
Query 349 GATCCTAA-TCATTCC-ACTATCT-CAGACATGTCAGTAGAACTTTTTGATCGCA-TTAT 404
|||||||| | | || | || | |||||| ||||| ||| ||| ||||||| | |
Sbjct 366 GATCCTAAGT-A-CCCTGCGAT-TGCAGACACATCAGTCGAAGATTTCGATCGCACCT-T 421
Query 405 CAGTGTGAACACAAGAGGTGCGTTTATTTGT-GCTAGAGAAGCTGCGAATAGGCTAAAAC 463
|||||| || |||| ||| |||||| | ||| || || |||||||| |||||||||||||
Sbjct 422 CAGTGTCAATACAAAAGGAGCGTTTCTGTGTAGCAAG-GAAGCTGCCAATAGGCTAAAAC 480
Query 464 GTGGAGGCGGTGGCCGGATAATTCTCCTCTCAACAT-CACTGGTTCAAACCTTAAATACA 522
||||| ||||| ||||| || ||||| || | | ||| | | | |||| | |||
Sbjct 481 AAGGAGGTGGTGGTCGGATCATACTCCTGACATCTTCCAC-GACCCGATCCTT-GAGACA 538
Query 523 -AACTATGGCT-CATACACGGCTTCAAAGGCAGCCGTAGAAGCCATGGCCAAGATTCTTG 580
|| ||| | | || | || ||||| ||||| || ||| | |||| |||||||||||
Sbjct 539 GGGCTTTGG-TGCCTATGCAGCATCAAAAGCAGCTGTGGAAACTATGGTCAAGATTCTTG 597
Query 581 CAAAAGAGCTCAAAGGAACAGAGA-TCACAGTTAACTGTGTTTCTCCGGGTCCCGTCGCC 639
||||||||||||||||||||| || |||| | ||||||||| |||| || ||| |||||
Sbjct 598 CAAAAGAGCTCAAAGGAACAG-GAATCACTGCAAACTGTGTTGCTCCAGGACCCATCGCC 656
Query 640 ACAGAAATGTT-TTACACAGGATTGAGCAATGAGATTGTTGAGAAA-GTTAAGTCACAGA 697
|| || ||||| || | ||| | | ||| ||| || |||| | || | | ||||
Sbjct 657 ACTGAGATGTTCTTTGAT-GGAAAAACCCCGGAG-TTGGTG-GAAAAGATA-GCCGCAGA 712
Query 698 A-CTTA-TTTGGTAGGATCGGTGA-GACCAAAGACATCGCACCTGTTGTTGGGTTCTTAG 754
| ||||| ||| ||||||| | ||| |||| | | ||| ||||||| ||||| |
Sbjct 713 GTCCCCCTTTGGGAGGGTCGGTGAAG-CCAGAGACGTGGTGCCTCTTGTTGGATTCTTGG 771
Query 755 CCAGTGATGCTGGCGAATGGATCAACGGTCAAGTCAT-CATGGCTAATGGTGG 806
| |||||| ||| |||||| | || |||||| |||| | || |||||||||
Sbjct 772 CTGGTGATGGTGGTGAATGGGTGAATGGTCAAATCATTCCTGT-TAATGGTGG 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5