BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04010.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340560 jgi|Araly1|340560|fgenesh1_pg.C_scaffold_3000323 2362 0.0
> Ahg340560 jgi|Araly1|340560|fgenesh1_pg.C_scaffold_3000323
Length=1482
Score = 2362 bits (1279), Expect = 0.0
Identities = 1417/1485 (95%), Gaps = 4/1485 (0%)
Strand=Plus/Plus
Query 220 atgaattatcga-cgaaaaCAGAGTGCTATAACTAACTCTGCCGTTGTCTTTATCATCAT 278
|||||| ||||| || ||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 1 ATGAATCATCGACCG-AAACAGAGTGCCATAACTAACTCCACCGGTGTCTTTATCATCAT 59
Query 279 CTCCGCCGTATGTTTTCTCTCCGGCGGTGTCTCTGGTTTGGGAGTAAACTGGGGAACAAT 338
|| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 CTACGCCTTATTTTTTCTCTCCGGCGGGGTCTCTGGTTTGGGAGTAAACTGGGGAACAAT 119
Query 339 GGCGAGTCATCAGTTACCGCCGAAGACGGTGGTGGAGATGCTTAAAGACAACAATATACA 398
||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 GGCGACTCATCAGTTACCACCGAAGACGGTGGTGGAAATGCTTAAAGACAACAATATACA 179
Query 399 GAAAGTGAAGTTGTTCGATGCCGACACAAACACCATGGGAGCTCTCGCCGGCTCCGGCGT 458
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 GAAAGTGAAGTTGTTCGATGCCGACACAAACACGATGGGAGCTCTCGCCGGCTCCGGCGT 239
Query 459 CGAAGTGATGGTGGCTATCCCTAATGATCTGCTCCTAGCGATGGGAAACTATCAAAGAGC 518
||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 240 CGAAGTGATGGTGGCGATCCCTAATGATCTGCTCCAAGCCATGGGAAACTATCAAAGAGC 299
Query 519 TAAAGATTGGGTCCAAAGAAACGTCTCTAGATTCAACTTTAACAACGGCGTTAAGATCAA 578
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 TAAAGATTGGGTCCAAAGAAACGTCTCTAGATTCAACTTTAATAACGGCGTTAAGATCAA 359
Query 579 ATACGTTGCAGTGGGGAACGAACCGTTCTTGACAGCGTACAACGGATCATTCATAAACCT 638
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATATGTTGCAGTGGGGAACGAGCCGTTCTTGACAGCGTACAACGGATCATTCATAAACCT 419
Query 639 AACGTACCCAGCACTCTTCAACATCCAAACCGCTTTAAACGAGGCTGGAGTTGGTGATTT 698
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 AACTTATCCAGCACTCTTCAACATCCAAACCGCTTTAAACGAAGCTGGAGTTGGTGATTT 479
Query 699 TACCAAAGCCACCGTTCCTTTAAACGCCGACGTTTACAATTCTCCTCCGGACAATCAAGT 758
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 CACCAAAGCCACCGTTCCTTTAAACGCCGACGTTTACAATTCTCCTCCGGACAACCAAGT 539
Query 759 CCCATCCGCCGGAAGATTCCGTTCCGACATTATCCAAGAAATGACACAAATCGTTAACTT 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCCATCCGCCGGAAGATTCCGTTCCGACATTATCCAAGAAATGACACAAATCGTTAACTT 599
Query 819 CCTCGCACAGAACAAAGCTCCTTTCACAGTCAACATTTATCCTTTCCTCAGTCTCTACTT 878
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 600 CCTCGCACAGAACAAAGCTCCCTTCACCGTCAACATTTACCCTTTCCTCAGTCTCTACTT 659
Query 879 AAGCAGCGACTTTCCTTTCGAATACGCTTTCTTTGACGGCCAAAACACCGTTAACGATAA 938
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 660 AAGCAGTGACTTTCCTTTCGATTACGCTTTCTTTGACGGCCAAAACACCGTTAATGACAA 719
Query 939 CGGCGTTATCTACACGAACGTCTTCGACGCTAGTTTCGACACGCTTTTAGCTTCTTTAAA 998
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 CGGCGTTGTCTACACAAACGTCTTCGACGCTAATTTCGACACGCTTTTAGCTTCTTTAAA 779
Query 999 CGCGTTGAATCACGGTAACATGGAAGTGATTGTTGGAGAAGTTGGTTGGCCTACGGATGG 1058
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 CGCGTTGAATCACGGTAACATGGAAGTGATCGTTGGAGAAGTTGGTTGGCCTACGGATGG 839
Query 1059 TGACAAGAACGCAAACGTTCCAAACGCGGAACGGTTTTATTCCGGTTTGCTTCCGCGGTT 1118
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGACAAGAACGCAAACGTTCAAAACGCGGAACGGTTTTATTCCGGTTTGCTTCCGCGGTT 899
Query 1119 GGCGAACAACGTTGGAACTCCTATGCGTAAAGGTTACATTGAGGTTTATCTTTTCGGATT 1178
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGCGAACAACGTAGGAACTCCTATGCGTAAAGGTTACATTGAGGTTTATCTTTTCGGATT 959
Query 1179 TATCGATGAAGATGCGAAAAGTGTAGCGCCAGGGAACTTCGAACGTCATTGGGGGATATT 1238
|||||||||||||| |||||| || || || ||||| |||||||||||||||||||||||
Sbjct 960 TATCGATGAAGATGTGAAAAGCGTTGCCCCGGGGAATTTCGAACGTCATTGGGGGATATT 1019
Query 1239 TAAATTTGATGGCCAACCGAAATTCCCGGTAGATTTTCGTGGACAAGGTCAGAAAAAGTT 1298
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1020 CAAATTTGATGGCCAACCGAAATTCCCGGTAGATTTTCGGGGGCAAGGTCAGAAAAAGTT 1079
Query 1299 CTTAACGGGAGCTCAAAACGTTCAGTACTTTCTGAACCAGTGGTGTATGTTTAATCCTAA 1358
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 CTTAACCGGAGCTCAAAACGTTCAGTACTTGCTGAACCAGTGGTGTATGTTTAATCCTAA 1139
Query 1359 TGGTCGTGGTAATATGAGTAGGCTCGGAGATAATATAAACTACGCGTGTTCGCATTCGGA 1418
||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1140 TGGCCGTGGTAATATGAGTAGCCTTGGAGATAACATAAACTACGCGTGTTCGCATTCGGA 1199
Query 1419 CTGTACCGCTTTAGGTTATGGATCATCTTGTGGCAATCTTGATGCGAATGGAAACGCATC 1478
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1200 CTGTACTGCTTTAGGTTACGGATCCTCTTGTGGCAATCTTGATGCGAATGGAAACGCATC 1259
Query 1479 TTACGCGTTTAATATGTATTTCCAAGTGCAAAATCAGGAAGCTCAGGCGTGCGATTTTGA 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTACGCGTTTAATATGTATTTCCAAGTGCAAAATCAGGAAGCTCAGGCGTGCGATTTTGA 1319
Query 1539 AGGGCTTGCAACGATTACTACTCAAAATATATCTCAAGGACAATGTAATTTTCCAATTCA 1598
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1320 AGGGCTTGCAACGATTACTACTCAAAATATTTCTCAAGGACAATGTAATTTCCCGATTCA 1379
Query 1599 GATTGGAGAGCCATCTTCTGGTCATTATGATTATAGCTATGGTTCGATGGTTAGGTTGTG 1658
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1380 GATTGGAGAGCCATCGGCTGGTCATTATGATTATAGCTATGGTTCGATGGCTAGGTTGTG 1439
Query 1659 TTTGGTGATGAGTGGCTTGGTCTTTCTTCTCATATAGAACAATGA 1703
||||||||||||||| ||||| |||||||||||| | |||||||
Sbjct 1440 TTTGGTGATGAGTGGTTTGGTGTTTCTTCTCATA--GCACAATGA 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5