BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04020.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903223 jgi|Araly1|903223|Al_scaffold_0003_351 1125 0.0
> Ahg903223 jgi|Araly1|903223|Al_scaffold_0003_351
Length=711
Score = 1125 bits (609), Expect = 0.0
Identities = 677/711 (95%), Gaps = 0/711 (0%)
Strand=Plus/Plus
Query 205 ATGTTTGATGAACGTGGATCCTTTTCTATTGCCCATCCGTATCCTGGTCCCCTTGCAGCT 264
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTTTGATGAACGTGGATCCTTTTCTATTGCCCATCCATATCCTGGTCCCCTTGCAGCT 60
Query 265 TTATTCAAGTCTATAGGAAAGCTTCCAGAAAGGGTTGCTTTTACTGGAGAGATTGTTCCT 324
|| |||||||| ||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct 61 TTGTTCAAGTCAATAGGAAAGCTTCCAGACCGGGTTGCTTTTACTGGTGAGATTGTCCCT 120
Query 325 GTTAAAGAGAAAAGGGTTGATGCGGTGAAGAAATATGTCGAGGAAGCTATACAGTCAGAG 384
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 121 GTTAAAGAGAAAAGGGTTGATGCGGTGAATAAATATGTCGAGGAAGCTATACAATTTGAG 180
Query 385 ATGAAAGCGATTAGCGATACCCCAAATTCTGTCCGTAGTATTTTGAATTCTTCCGATCAG 444
|||| ||||||||||| | |||||||||||| |||||||| |||||||||||||||| |
Sbjct 181 ATGAGGGCGATTAGCGAGAGCCCAAATTCTGTTCGTAGTATCTTGAATTCTTCCGATCGG 240
Query 445 ATGTATGCCTCCCGGTGTGACAGTCTTAGAGCCCTGATCAATGATGCAAAGGAAAAATAC 504
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 241 ATGTATGCCTCCCGGTGTGATAGTCTTAGAGCCCTGATCGATGATGCAAAGGAAAAATAC 300
Query 505 GTTATCTATAAGTTCGTTCCAAGCTCATGTATGTTTATTGACCCAAATGGTACGAAAGAA 564
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GTTATCTATAAGTTCGTTCCAAGCTCATGTATGTTTATTGACCCAAATGGCACGAAAGAA 360
Query 565 ATAGACTTGAAGGTTTTGGAACTGTCAAAACCAGATCCATTAGGGACTTGGTCGACAAAA 624
|||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 361 ATAGACTTGAAGGTTTTGGAACTGTCGAAAGCAGATCCATTAGGGACTTGGTCTACAAAA 420
Query 625 CTTGTGGATGGAATCAATAAGAACGAATCAAGAAGACGAGCTTTGATTCTTTTCTGTTTA 684
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CTTGTGGATGGAATAAATAAGAACGAATCAAGAAGACGGGCTTTGATTCTTTTCTGTTTA 480
Query 685 TATTTTCTTGATATAAACGCAAGGGATGCTTATATGGTATCAGTGGATAGGAAAGGTTTC 744
|| | ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 481 TACTATCTCGATATAAACGCAAGGGATGCTTATTTGGTATCAGTGGATAAGAAAGGTTTC 540
Query 745 CACTTGTTGGGGAAGGTACCGAGTGAACAAGAAGCTGGAGATGAGTATCAGTGGAGAGAG 804
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 541 CACTTGTTGGGGAAGGTACCGAGTGAAGAAGAAGCTGGAGATGAGTATCAATGGAGAGAG 600
Query 805 TTTAGGTTTGAGTTTGAAGAAGAGGTGAAAGACGTTGAAGCTTTTTGCCACCAACTTGTG 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 TTTAGGTTTGAGTTTGAAGAAGAGGTGAAAGACGTTGAAGCTTTTTGCCACCAACTCGTG 660
Query 865 GAAATGGAACAAGAGGTTGTAAGCAAGTTTACTGACCATACCGGTTTGTGA 915
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAATGGAACAAGAGGTTGTAAGCAAGTTTACTGACCATACCGGTTTGTGA 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5