BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04030.3
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903224 jgi|Araly1|903224|Al_scaffold_0003_352 1934 0.0
Ahg488696 jgi|Araly1|488696|fgenesh2_kg.6__1830__AT5G18240.4 994 0.0
> Ahg903224 jgi|Araly1|903224|Al_scaffold_0003_352
Length=1185
Score = 1934 bits (1047), Expect = 0.0
Identities = 1140/1186 (96%), Gaps = 2/1186 (0%)
Strand=Plus/Plus
Query 124 ATGTATTACCAAAACCAGCACCAAGGAAAGAACATCCTCTCATCTTCAAGAATGCATATA 183
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 1 ATGTATTACCAAAACCAGCACCAAGGAAAGAACGTCCTCTCTTCTTCGAGAATGCATATA 60
Query 184 ACTTCTGAAAGGCATCCATTCCTTAGAGGGAATAGTCCAGGTGATTCTGGACTTATCCTA 243
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 61 ACTTCTGAAAGGCATCCATTCCTTAGAGGGAATAGTCCAGGAGATTCTGGACTCATCCTT 120
Query 244 TCAACCGATGCAAAGCCACGCCTAAAATGGACTCCAGATCTTCATGAGAGATTCATTGAA 303
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TCAACCGATGCAAAGCCGCGCCTAAAATGGACTCCAGATCTTCATGAGAGATTCATCGAA 180
Query 304 GCAGTCAATCAACTCGGTGGAGCAGATAAAGCTACTCCTAAGACAATCATGAAAGTCATG 363
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GCGGTCAATCAACTCGGTGGAGCAGATAAAGCTACCCCTAAGACAATCATGAAAGTCATG 240
Query 364 GGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAATACAGGCTGAGC 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 GGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAATACAGGTTGAGC 300
Query 424 AAGAATCTCAACGGACAAGCTAACAACAGCTTCAACAAAATAGGTATAATGACCATGATG 483
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||
Sbjct 301 AAGAATCTCAACGGACAAGCTAACAGCAGCTTCAACAAAATAGGTATGATGACCATGTTG 360
Query 484 GAAGAAAAGACTCCTGATGCAGACGAAATTCAAAGCGAGAATTTAAGCATTGGACCACAG 543
|||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 361 GAAGAACAGACTCCTGATGCAGACGAAAGTCAAAGCGAGAGTTTAAGCATTGGACCACAG 420
Query 544 CCAAACAAGAATTCACCAATAGGTGAAGCACTGCAAATGCAAATAGAGGTCCAAAGAAGG 603
|| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 CCTAACAAGAACTCGCCAATAGGTGAAGCACTGCAGATGCAAATAGAGGTCCAAAGAAGG 480
Query 604 CTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTTAGGATAGAGGCTCAAGGGAAG 663
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 CTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGAGGCTCAAGGGAAG 540
Query 664 TACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAGACAGAACCTCGGTGCA 723
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 TACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAAACAGAACCTCGGTGCA 600
Query 724 GCTGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAACTAGTATCTAAAGTATCAGCAGAG 783
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 GCAGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAATTAGTATCTAAAGTATCAGCAGAA 660
Query 784 TACCCAAACTCTAGTTTCCTAGAACCAAAAGAACTTCAAAACCTATGCTCACAACAGATG 843
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TACCCAAACTCTAGTATCCTAGAACCAAAAGAACTTCAAAACCTATGCTCACAACAGATG 720
Query 844 CAAACAAACTATCCACCTGATTGCTCTCTTGAAAGTTGCCTGACCTCAAGCGAGGGAACG 903
||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 721 CAAACAACCTATCCACCAGATTGCTCTCTAGAAAGTTGCCTGACCTCAAGCGAGGGAACA 780
Query 904 CAGAAAAA-CTCGAAAATGCTAGAGAACAACAGATTAGGACTAAGAACGTATATTGGTGA 962
|||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 781 CAGAAAAACCT-GAAAATGCTAGAGAACAACAGATTAGGACTAAGAACATATCTTGGTGA 839
Query 963 TTCAACATCGGAGCAGAAAGAGATTATGGAAGAACCATTGTTCCAAAGAATGGAGCTCAC 1022
||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 840 TTCAACATCCGAGCAGAAAGAGATTATGGAAGAACAATTGTTCCAAAGAAGGGAGCTCAC 899
Query 1023 ATGGACAGAAGGTCTAAGAGGGAATCCATATCTTTCAACAATGGTGAGTGAAGCAGAACA 1082
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 900 ATGGACAGAAGGTCTAAGAGGGAATCCATATCTTTCAGCAATGGTGAGTGAAGCAGAACA 959
Query 1083 AAGAATCTCATATTCAGAAAGAAGTCCAGGTAGATTATCAATAGGAGTAGGATTGCACGG 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAGAATCTCATATTCAGAAAGAAGTCCAGGTAGATTATCAATAGGAGTAGGATTGCACGG 1019
Query 1143 ACACAAAAGCCAACATCAACAAGGCAACAATGAGGATCATAAGCTTGAAACACGAAACCG 1202
||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||
Sbjct 1020 ACACAAAAGTCAACATCAACAAGGCAACAATGAGGACCATAAGTTTGAAACACGAAGCCG 1079
Query 1203 GAAAGGCATGGATTCAACAACAGAGCTAGATCTCAACACACATGTTGAAAACTATTGTAC 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1080 GAAAGGCATGGATTCAACAACAGAGCTAGATCTCAACACACATGTTGAAAACTTTTGTAC 1139
Query 1263 AACGCGTACGAAACAGTTCGACTTGAATGGTTTCAGCTGGAACTGA 1308
|| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1140 AAAGCGTACGAAACAGTTTGACTTGAATGGTTTCAGCTGGAACTGA 1185
> Ahg488696 jgi|Araly1|488696|fgenesh2_kg.6__1830__AT5G18240.4
Length=1587
Score = 994 bits (538), Expect = 0.0
Identities = 1018/1241 (82%), Gaps = 67/1241 (5%)
Strand=Plus/Plus
Query 116 CAGACTTTATGTATTACCAAAACCAGCACCAAGGAAAGAACATCCTCTCATCTTCAAGAA 175
||||| ||||||||||||||||||||||||||||||||| ||||||||| || || ||||
Sbjct 122 CAGAC-TTATGTATTACCAAAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCGAGAA 180
Query 176 TG--CATATAACTTCTGAAAGGCATCCATTCCTTAGAGGG-AATAGTC-CAGGTGATTCT 231
|| ||| | | |||||||||| |||| ||||| || ||| ||| | | |||| ||||||
Sbjct 181 TGCCCAT-TCA-TTCTGAAAGGAATCCGTTCCTCAG-GGGAAAT-GGCACAGGAGATTCT 236
Query 232 GGACTTATCCTATCAACCGATGCAAAGCCACGCCTAAAATGGACTCCAGATCTTCATGAG 291
||||| ||||| ||||| |||||||||||| | ||||||||||||||||||||||| |||
Sbjct 237 GGACTCATCCTCTCAACTGATGCAAAGCCAAGACTAAAATGGACTCCAGATCTTCACGAG 296
Query 292 AGATTCATTGAAGCAGTCAATCAACTCGGTGGAGCAGATAAAGCTACTCCTAAGACAATC 351
||||| ||||||| |||||||| || || |||| |||||| ||||||||||||||||||
Sbjct 297 AGATTTGTTGAAGCGGTCAATCAGCTTGGAGGAGGAGATAAGGCTACTCCTAAGACAATC 356
Query 352 ATGAAAGTCATGGGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAA 411
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 357 ATGAAAGTCATGGGTATTCCAGGCCTTACCTTATACCATCTCAAGAGTCATCTTCAGAAA 416
Query 412 TACAGGCTGAGCAAGAATCTCAACGGACAAGCTAACAACAGCTTCAACAAAATAGGTATA 471
|| ||||| ||||||||||| || ||||||||||||| ||| || ||||| | | || |
Sbjct 417 TATAGGCTAAGCAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACAAGTGTG 476
Query 472 ATGACCATGATGGAAGAAAAGACTCCTGATGCAGACGAAATTCAAAGCGAGAATTTAAGC 531
||||||||| | |||||||| ||||||| | |||||||| ||| || |||| |||||||
Sbjct 477 ATGACCATGGTAGAAGAAAACCCTCCTGAAGTAGACGAAAGTCACAGTGAGAGTTTAAGC 536
Query 532 ATTGGACCACAGCCAAACAAGAA-TTCACCAATAGGTGAAGCACTGCAAATGCAAATAGA 590
|||||||||||||| | || ||| || || ||| |||| || || ||||||||||||||
Sbjct 537 ATTGGACCACAGCCGACCATGAACTT-GCCCATAAGTGATGCCCTTCAAATGCAAATAGA 595
Query 591 GGTCCAAAGAAGGCTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTTAGGATAGA 650
||| || |||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 596 GGTTCAGAGAAGGCTACACGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGA 655
Query 651 GGCTCAAGGGAAGTACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAGACA 710
||||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 656 GGCTCAAGGAAAGTACTTGCAATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACA 715
Query 711 GAACCTCGGTGCAGCTGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAACTAGTATCTAA 770
|||||| |||||||||||||| ||||| | |||| ||||||||| ||| ||||||||||
Sbjct 716 GAACCTAGGTGCAGCTGGGATTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAA 775
Query 771 AGTATCAGCAGAGTACCCAAACTCTAGTTTCCTAGAACCAAAAGAACTTCAAAACCTATG 830
|||||||||||| || ||| ||||||||||||||||||| |||||||| || || ||| |
Sbjct 776 AGTATCAGCAGAATATCCAGACTCTAGTTTCCTAGAACCGAAAGAACTCCAGAATCTACG 835
Query 831 CTCA-CAACAGATGCAAACAAACTATCCACCTGATTGCTCTCTTGAAAGTTGCCTGACCT 889
| || ||||||||||||||| |||||||||| | | ||| || || |||||||| ||||
Sbjct 836 C-CATCAACAGATGCAAACAGCCTATCCACCTAACTCCTCCCTGGACAGTTGCCTAACCT 894
Query 890 CAAGCGAGGGAA-CGCAGAAAAACTCGAAA-ATGCTAGAGAACAACAGATTAGGACTAAG 947
|||| || |||| | |||||| | | ||| ||||| || ||||||| | ||| ||||
Sbjct 895 CAAGTGAAGGAAAC-CAGAAAGCCCC-AAAGATGCTTGA---CAACAGACTGGGATTAAG 949
Query 948 AACGTATATTGGTGATTCAACATCGGAGCAGAAAGAGATTATGGAAGAACCATTGTTCCA 1007
||| ||||| || |||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 950 AACATATATCGGAGATTCAACTTCAGAGCAGAAAGAGATAATGGAAGAACCATTCTTCCA 1009
Query 1008 AAGAATGGAGCTCACATGGACAGAAG--GT---C-TAAGAG-G-G-AA---T---CCATA 1052
||||||||||||||||| |||||| | | | |||| | | || | |||||
Sbjct 1010 TCGAATGGAGCTCACATGGGCAGAAGAAGAAAGCCTCAGAGAGAGTAACAATAGGCCATA 1069
Query 1053 TCTTTCAACAATGG-TGAGTGA-AGCAGAACAAAGAATCTCAT-ATTCA-GAAAGAAGTC 1108
|||||| ||||||| | | | | |||||| |||||||| | || || ||| |||| |
Sbjct 1070 TCTTTCGACAATGGCTAACA-ACA-CAGAACCGAGAATCTCGTCAT-CAAGAA-GAAGCC 1125
Query 1109 CAGGTAGATTATCAATAGGAGTAGGATTGCACGGACACAAA--AGCCAACATCAACAAGG 1166
| || ||||| ||||||||||| ||||| || | ||||| | || | | | |||
Sbjct 1126 CTGGAAGATTGTCAATAGGAGTGGGATTACATGAACACAGAGGAGGGAG--T-AGCAA-- 1180
Query 1167 CAACAATGAGGAT-CATAAGCTTGAAACA-CGA-AACCG-GAA-AG-GCATGGATTCAA- 1219
||||| |||| || || ||| || || ||| || | ||| | ||| | || ||
Sbjct 1181 CAACAGTGAGTATACAGAAGAAAGATTCAACGAGAATGGTGAAGATTGCAAGC-TTGAAA 1239
Query 1220 CA-ACA---GA---GCT--AGATCTCAACACACATGTTGAAAACTATTGTACAACGCGTA 1270
|| ||| || ||| |||||| |||||||| | ||||||||| | |||||||||
Sbjct 1240 CACACACAAGAACAGCTCTAGATCTTAACACACACGACGAAAACTATGGCACAACGCGTC 1299
Query 1271 CGAAACAGTTCGACTTGAATGGTTTCAGCTGGAACTGAGAA 1311
|||||||||| || |||||||||||||||||||| ||||||
Sbjct 1300 CGAAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGAGAA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50360373357
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5