BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04040.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477663 jgi|Araly1|477663|fgenesh2_kg.3__364__AT3G04040.1 857 0.0
Ahg488698 jgi|Araly1|488698|fgenesh2_kg.6__1832__AT5G18250.1 422 2e-117
> Ahg477663 jgi|Araly1|477663|fgenesh2_kg.3__364__AT3G04040.1
Length=658
Score = 857 bits (464), Expect = 0.0
Identities = 589/644 (91%), Gaps = 30/644 (5%)
Strand=Plus/Plus
Query 116 TGTCTGCAACAATGGCGGATTCA-GGAAAGGAGATCGGATCCAGATGTCATCACTGCGCA 174
||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||
Sbjct 21 TGTCTGCAACAATGGCGGATTCATGG-AAGGAGATCGGATCTAGATGCCATCACTGCGCA 79
Query 175 GGCCCTCTTACGAAAAATCTGGAAACCAACGAATGGACTGTGGCTCCGTTTATCAGGGAT 234
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 80 GGCCCTCTTACGAAAAATCTGGAAACCAACGAATGGACTGTGGCTCCGTTCATCAGGGAT 139
Query 235 AGCTTCTCTATGATTGGATCAGCTGTTGGTGGTACTGCAAGTGCTTTCATTGGGTTTCAC 294
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 140 AGCTTCTCTATGATTGGATCAGCTGTAGGTGGTACTGCAAGTGCTTTCATTGGATTTAAC 199
Query 295 CATGTAATGCCGATTGTACGCAAGTGGATCAAAGGACCCATGTGGTTGCATTTTCTTGTT 354
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 200 CATGTAATGCCGATTGTACGCAAGTGGATAAAAGGACCCATGTGGTTGCATTTTCTTGTT 259
Query 355 GGTGCTCCACCTGTGATAGTTGTTTCATCAGCCTGTGCTGGACTTGCAGGTGGCGCTGTA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GGTGCTCCACCTGTGATAGTTGTTTCATCAGCCTGTGCTGGACTTGCAGGTGGCGCTGTA 319
Query 415 CCGGCTTTAGCACAGCTTGCATCGTCGTCTTATCATGCGGCTGTTCATTCATCTCAGCCA 474
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 320 CCGGCTTTGGCACAGCTTGCATCGTCGTCTTATCATGCGGCTGTACATTCATCTCAGCCA 379
Query 475 CCACAAGGGCAAGATAAGAACCAATTGCACAATTCCTCTACCATTTCTCCTTTGTAGATG 534
|| ||||||||||| |||||| |||||||||| ||||||||||||||||||| |||| |
Sbjct 380 CCGCAAGGGCAAGAGAAGAACAAATTGCACAAATCCTCTACCATTTCTCCTTCGTAGCT- 438
Query 535 TTACACAGCTCTCTTCTCTTGCTCTTTCCAT--GTGT-AT----A-AA-GATTCAACTTT 585
||||||||||||||| |||||| |||||| |||| || | || | |||||||||
Sbjct 439 --ACACAGCTCTCTTCTGTTGCTCCTTCCATATGTGTTATGTGTATAAAGTTTCAACTTT 496
Query 586 GTTTCCTTTGGACAAAATGAGAGATCAAATT-GTCTGAAGAT---C----C-AGGTTTGC 636
|||||||| |||||||||||||||||||||| |||||||||| | | || ||||
Sbjct 497 GTTTCCTTAGGACAAAATGAGAGATCAAATTTGTCTGAAGATAAACTGATCCAGTTTTGA 556
Query 637 CACTTGACACTTTTGAGGGTATACAAAA--CTTAATGCAGAAACGTGATTAGACA-CAGA 693
||||||||||||||||| |||||||||| || |||||||||||||||||||| | ||||
Sbjct 557 CACTTGACACTTTTGAGTGTATACAAAAAACTGAATGCAGAAACGTGATTAGA-AGCAGA 615
Query 694 TTAATCT-GTA-TTACGAATTCAAATTTAGTGCTAAACAAGCTT 735
||||| | ||| ||||||||||| |||||||||||||||||||
Sbjct 616 TTAAT-TAGTAGTTACGAATTCATTTTTAGTGCTAAACAAGCTT 658
> Ahg488698 jgi|Araly1|488698|fgenesh2_kg.6__1832__AT5G18250.1
Length=514
Score = 422 bits (228), Expect = 2e-117
Identities = 351/410 (86%), Gaps = 9/410 (2%)
Strand=Plus/Plus
Query 156 CAGATGTCATCACTGCGCAGGCCCTCTTACGAAAAATCTGGAAACCAACGAATGGACTGT 215
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CAGATGCCATCACTGCGCAGGCCCTCTTACGAAAAATCTGGAAACCAGTAAATGGACTGT 120
Query 216 GGCTCCGTTTATCAGGGATAGCTTCTCTATGATTGGATCAGCTGTTGGTGGTACTGCAAG 275
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCTCCGTTCATCAGGGATAGCTTCTCTATGATTGGATCAGCTGTTGGTGGTACTGCAAG 180
Query 276 TGCTTTCATTGGGTTTCACCATGTAATGCCGATTGTACGCAAGTGGATCAAAGGACCCAT 335
||| |||||||| ||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 181 TGCATTCATTGGATTTAACCATGCAATGCCTATTGTACGCAAGTGGATCAAAGGACCCAT 240
Query 336 GTGGTTGCATTTTCTTGTTGGTGCTCCACCTGTGATAGTTGTTTCATCAGCCTGTGCTGG 395
|||||| |||||||||||||| || || ||||| |||||| |||||||||||||||||||
Sbjct 241 GTGGTTACATTTTCTTGTTGGGGCACCGCCTGTTATAGTTCTTTCATCAGCCTGTGCTGG 300
Query 396 ACTTGCAGGTGGCGCTGTACCGGCTTTAGCACAGCTTGCATCGTCGTCTTATC-ATGCGG 454
||| ||||||||| |||||||||| | |||||||| || || || || || | | || |
Sbjct 301 ACTAGCAGGTGGCACTGTACCGGCACTGGCACAGCTCGCTTCATCTTCATACCGA-GCTG 359
Query 455 CTGTTCATTCATCTCAGCCACCACAAGGGCAAGATAAGAACCAATTGCACAATTCCTCTA 514
| || ||||| |||||||||||||||| ||| | | ||| || |||| || || | |
Sbjct 360 CAGTCCATTCGTCTCAGCCACCACAAGCACAAAAGGATAACAAAATGCAAAAGTC-T--A 416
Query 515 CCATTTCTCCTTTGTAGATGTTACA-CA--GCTCTCT-TCTCTTGCTCTT 560
| | ||||||| |||| || ||| || ||||||| ||| ||| ||||
Sbjct 417 CAACTTCTCCTCTGTAAATCACACAGCACAGCTCTCTCTCTTTTGTTCTT 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5