BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04070.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477666 jgi|Araly1|477666|fgenesh2_kg.3__367__AT3G04070.1 2004 0.0
Ahg478997 jgi|Araly1|478997|fgenesh2_kg.3__1698__AT3G15510.1 156 4e-37
Ahg918785 jgi|Araly1|918785|scaffold_100066.1 63.9 3e-09
> Ahg477666 jgi|Araly1|477666|fgenesh2_kg.3__367__AT3G04070.1
Length=1259
Score = 2004 bits (1085), Expect = 0.0
Identities = 1203/1260 (95%), Gaps = 7/1260 (1%)
Strand=Plus/Plus
Query 1 AAAAATTTCAATCTTTGGCTCACTTCTTTGTTTATCTCATAGCTCTTCACCAAAACCAAT 60
|||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct 1 AAAAATTTCAATCTTTGGCTCACTTCTTTGTTTATCTCTTTGTTCATCACCAAAACCAAT 60
Query 61 ATTTTCTCCTTTGTTGTTCTTTCTTTTCTATCAAAACTTTCTACTTAAAATATCATTCCT 120
||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 61 ATTTTCTCCTTCGTTGTTCTTTCTTTCCTATCAAAACTTTATACTTAAAATATCATTCCA 120
Query 121 TTAAACAATGATAAGCAAGGATCCAAGATCGAGTTTACCTCCAGGGTTTCGATTTCATCC 180
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AGAAA-AATGATAAGCAAGGATCCAAGATCGAGTTTACCACCAGGGTTTCGATTTCATCC 179
Query 181 AACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCAGTCCC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 AACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCGGTCCC 239
Query 241 GCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAA 299
Query 301 GGCTCCATTTGGGGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGGAAATATCCAAA 360
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 300 GGCTCCATTTGGAGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGAAAATATCCTAA 359
Query 361 CGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACAGATAA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 360 CGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACTGACAA 419
Query 421 ATTGATTGCGGTACCAAATGGTGAAGGGTTTCATGAAAACATTGGTATaaaaaaaGCTCT 480
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTAATTGCGGTAGCGAATGGTGAAGGGTTTCATGAAAACATTGGTATAAAAAAAGCTCT 479
Query 481 TGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATA 539
Query 541 TCGTCTTGCCGATTCATTATCTCCCAAAAGAATTAACTCTTCTAGGAGCGGTGGTAGCGA 600
|||||||||||| || ||||||||||||||||| | || ||||||||||||| ||||| |
Sbjct 540 TCGTCTTGCCGACTCTTTATCTCCCAAAAGAATCAGCTGTTCTAGGAGCGGTAGTAGCCA 599
Query 601 AGTTAATAATAATTTTGGAGATAGGAA--T----TCTAAAGAATATTCGATGAGACTGGA 654
||| ||||||||| ||||||||||||| | |||||||||||||||||||| |||||
Sbjct 600 AGTCAATAATAATCTTGGAGATAGGAATTTGAAATCTAAAGAATATTCGATGAGGCTGGA 659
Query 655 TGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGT 719
Query 715 TGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCG 779
Query 775 CGGAACCTTTTTGCCAAATTTGCAAAATGATCAACCCCTTAAACGCCAGAAGTCTTCTTG 834
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 780 CGGAACCTTTTTGCCAAATTTGCAAAACGATCAACCCCTTAAACGTCAGAAGTCTTCTTG 839
Query 835 TTCGTTCTCAAACTTACTAGACGCTACAGATTTGACGTTTCTCGCAAATTTTCTAAACGA 894
||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 TTCATTCTCAAACTTATTAGACGCTACAGATTTGACGTTCCTCGCAAATTTTCTAAACGA 899
Query 895 AACCCCGGAAAATCGTTCTGAATCAGATTTTTCTTTCATGATTGGCAATTTCTCTAATCC 954
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 900 AACCCCGGAAAATCGTTCTGAATCGGATTTTTCTTTCATGAGTGGCAATTTCTCTAATCC 959
Query 955 TGACATTTACGGAAACCATTACTTGGATCAGAAGTTACCGCAGTTGAGCTCTCCCACTTC 1014
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 960 TGACATCTACGGAAACCATTACTTGGATCAGAAGTTACCACAGTTGAGCTCTCCTACTTC 1019
Query 1015 AGAGACAAGCGGCATCGGAAGCAAAAGAGAGAGAGTGGATTTTGCGGAAGAAACGATAAA 1074
||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 1020 AGAGACAAGCGGCGTCGGAAACAAAAGAGAGAGACTAGATTTTGCGGAAGAAACGATAAA 1079
Query 1075 CGCTTCGAAGAAGATGATGAACACATATAGTTACAATAATAGTATAGATCAAATGGATCA 1134
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 CGCTTCGAAGAAGATGATGAACACCTATAGTTACAATAATAGTATAGATCAAATGGATCA 1139
Query 1135 TAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCATGATGAGTTCTCACCTTCA 1194
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1140 TAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCTTGATGAGTTCTCACCTTCA 1199
Query 1195 ATATCAAGGCTAGAGAGAATATTAATTTGAAAACCTAATCACGAATTAGGGATCATTCGG 1254
|||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 1200 GTATCAAGGCTAGAGAGAATATTTATTTGAAAACCTAATGACGAATTGGGGATCATTCGG 1259
> Ahg478997 jgi|Araly1|478997|fgenesh2_kg.3__1698__AT3G15510.1
Length=1558
Score = 156 bits (84), Expect = 4e-37
Identities = 210/270 (78%), Gaps = 12/270 (4%)
Strand=Plus/Plus
Query 158 CCTCCAGGGTTTCGATTTCATCCAACAGATGAAGAACTCATTCTCCATTACCT-AAGGAA 216
|||||||| || || ||||| ||||| |||||||| || | | |||||||| || |
Sbjct 178 CCTCCAGGCTTCCGGTTTCACCCAACCGATGAAGAGCTTGTGGTTCATTACCTCAA--AC 235
Query 217 G-AAAGTTTCCTCTTCCCCAGT-CCCGCTTTCGATTATCGCCGATGTCGATATCTACAAA 274
| |||| ||||| | || | || | | | || |||||||| |||||| |||| |||
Sbjct 236 GCAAAGCCGCCTCTGCTCCTTTACCTG-TAGCCATCATCGCCGAAGTCGATCTCTATAAA 294
Query 275 TCCGATCCATGGG-ATTTACCAGCTAAGGC-TCCATTTGGGGAGA-AAGAGTGGTATTTT 331
| ||||||||||| | || || ||||| || | | ||||| || | |||| ||||| ||
Sbjct 295 TTCGATCCATGGGAACTT-CCCGCTAAAGCGT-CGTTTGGAGA-ACAAGAATGGTACTTC 351
Query 332 TTCAGTCCGAGGGATAGGAAATATCCAAACGGAGCAAGACCAAACAGAGCAGCTGCGTCT 391
|||||||| | ||| |||| ||||||||||||||||||||||||||||| || | ||
Sbjct 352 TTCAGTCCTCGAGATCGGAAGTATCCAAACGGAGCAAGACCAAACAGAGCGGCAACTTCA 411
Query 392 GGATATTGGAAAGCAACCGGAACAGATAAA 421
|||||||||||||| ||||| |||||||||
Sbjct 412 GGATATTGGAAAGCGACCGGTACAGATAAA 441
> Ahg918785 jgi|Araly1|918785|scaffold_100066.1
Length=938
Score = 63.9 bits (34), Expect = 3e-09
Identities = 47/53 (89%), Gaps = 2/53 (4%)
Strand=Plus/Plus
Query 633 AAGAATATTCGATGAGACTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAA 685
||||||| || | || |||||||||||||||||||||||||||||||| |||
Sbjct 454 AAGAATAGTC--TCAGGCTGGATGATTGGGTTCTTTGCCGGATTTACAACAAA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5