BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04080.1
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477668 jgi|Araly1|477668|fgenesh2_kg.3__369__AT3G04080.1 2848 0.0
Ahg941351 jgi|Araly1|941351|scaffold_601895.1 1447 0.0
> Ahg477668 jgi|Araly1|477668|fgenesh2_kg.3__369__AT3G04080.1
Length=1786
Score = 2848 bits (1542), Expect = 0.0
Identities = 1715/1798 (95%), Gaps = 13/1798 (1%)
Strand=Plus/Plus
Query 1 ACACTAAAATCAGCTTTTCGTGGATGTTACCCATTTCTCTTCCGTAATCGTTAAA-TTAT 59
||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||
Sbjct 1 ACACTAAAATCAGCTTTTCGTGGATGTTACCCAATTCTCTCCCGTAGTCGTTAAATTTAT 60
Query 60 GACATAACGTCTTTGTTTTGGTCGTATCGTTCACGCAAAACTTCACGATTCAGATCTGTG 119
|| ||||||| |||||||||||||| | ||||| |||||||||||||||
Sbjct 61 AACGTAACGTCATTGTTTTGGTCGTA----T----CAAAATTTCACGATTCAGATC---- 108
Query 120 TGTGGCAGAATTTGAATCGAAGCATAGGATCAATCCGGTAAGCAGCCGTAACTTGCAATC 179
|||||| | ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 109 TGTGGCTGTATTTGAATCCAAGCATAGGATAAATCCGGTAAGCAGCCGTAACTTGCAATC 168
Query 180 GATCGCCGATCTGGATCCGTTAAAGGATCCCTCGCAGTCCTTGAAGATATCGGCGTCCTC 239
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 169 GATCGCCGATCTGGATCCGTTAAAGGATCCGTCGCAGTCCTTGAAGACATCGGCGTCCTC 228
Query 240 CGCCACCGGGAACAGGATCCGTTACCGTTCACCTTCCGCTTCTGAGCTATTGGAGTCTGG 299
||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 229 CGCCACCGGAAACAAGATCCGTTACCGTTCGCCTTCCGCTTCTGAGCTACTGGAGTCAGG 288
Query 300 ACTAGCCACCGGATTATCCGGTAACCATTCTCCTACTTCCGACTCTCATCAGGGACTTGT 359
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 289 ACTAGCCACCGGATTGTCCGGTAACCATTCTCCTACCTCCGACTCTCATCAGGGACTTCT 348
Query 360 GTCTATCGACGGAGGAAAAATGACGGCGAAGCGAGCGATCGGACGGCACGAATCCCTTGC 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GTCTATCGACGGAGGGAAAATGACGGCGAAGCGAGCGATCGGACGGCACGAATCCCTTGC 408
Query 420 TGACAAGGTCCATCGACATCGTGGTCTTCTACTTGTGATTTCGATCCCCATTGTGTTGAT 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 409 TGACAAGGTCCATCGACATCGTGGTCTTCTACTTGTGATTTCGATTCCCATTGTGTTGAT 468
Query 480 AGCTCTTGTGCTTCTGTTAATGCCGGGGACGTCGACGTCCGTCTCTGTCATCGAGTACAC 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 469 AGCTCTTGTGCTTCTGTTAATGCCGGGGACGTCGACGTCCGTCTCTGTCATTGAGTACAC 528
Query 540 GATGAAAAACCACGAGGGAGGTTCCAATTCGAGGGGTCCGAAGAATTACGCTGTGATTTT 599
||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 529 GATGAAAAAACACGAGGGAGGTTCGAATTCCAGGGGTCCCAAGAATTACGCTGTGATTTT 588
Query 600 TGATGCTGGAAGTTCTGGAAGCCGTGTGCATGTTTACTGTTTCGATCAGAATTTGGATCT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 589 TGATGCTGGAAGTTCTGGAAGCCGTGTGCATGTTTACTGTTTCGATCAGAATTTAGATCT 648
Query 660 TGTTCCTTTGGAGAATGAGCTCGAGCTCTTCTTACAGCTAAAACCGGGTTTAAGTGCATA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TGTTCCTTTGGAGAATGAGCTCGAGCTCTTCTTACAGCTAAAACCGGGTTTAAGTGCATA 708
Query 720 TCCTAATGATCCTCGGCAATCAGCAAACTCTTTAGTAACTCTTCTGGACAAAGCAGAAGC 779
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 709 TCCTAATGATCCTCGGCAGTCAGCAAACTCTTTGGTATCTCTTCTGGACAAAGCAGAAGC 768
Query 780 TTCCGTTCCCCGTGAGTTGCGTCCAAAGACTCCTGTCAGAGTTGGGGCAACTGCAGGTTT 839
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 769 TTCGGTTCCCCGTGACTTGCGTCCAAAGACTCCTGTCAGAGTTGGGGCAACCGCAGGTTT 828
Query 840 GAGAGCTTTGGGTCACCAAGCCTCTGAAAACATTTTGCAAGCGGTTAGGGAGCTCCTCAA 899
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 829 GAGGGCTTTGGGTCACCAAGCCTCTGAAAACATTTTGCAAGCGGTTAGGGTGCTCCTGAA 888
Query 900 AGGTAGAAGTAGGCTGAAGACTGAGGCAAATGCAGTGACTGTTCTGGATGGTACTCAGGA 959
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 889 AGATAGAAGTAGGCTGAAGACTGAGGCAAATGCAGTGACTGTTCTGGATGGTGCTCAGGA 948
Query 960 AGGATCTTATCAGTGGGTGACAATTAATTACTTGCTAAGGACTTTGGGAAAGCCGTACTC 1019
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 949 AGGATCTTATCAGTGGGTGACAATTAACTACTTGCTAAGGACTTTGGGAAAGCCGTACTC 1008
Query 1020 GGACACAGTTGGAGTGGTTGATCTTGGAGGGGGGTCGGTTCAAATGGCATATGCTATACC 1079
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1009 GGACACAGTTGGAGTGGTTGATCTTGGAGGGGGGTCGGTTCAGATGGCGTATGCTATACC 1068
Query 1080 AGAGGAAGATGCTGCAACTGCACCAAAACCAGTAGAAGGCGAGGATTCTTATGTCAGAGA 1139
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1069 AGAGGAAGATGCTGCAACTGCACCAAAACCATTAGAAGGCGAGGATTCTTATGTCAGAGA 1128
Query 1140 AATGTATTTGAAGGGACGAAAGTATTTCCTCTATGTTCATAGCTACCTACATTACGGGTT 1199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AATGTATCTGAAGGGACGAAAGTATTTCCTCTATGTTCATAGCTACCTACATTACGGGTT 1188
Query 1200 ACTGGCTGCTCGGGCTGAGATTTTGAAAGTTTCTGAGGACTCTAACAACCCCTGTATCGC 1259
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1189 ACTGGCTGCTCGGGCTGAGATTTTGAAAGTCTCTGAGGACTCTAACAACCCCTGTATCGT 1248
Query 1260 GACTGGATATGCTGGTACCTACAAATATGGAGGAAAAGCGTTTAAAGCTGCAGCTTCTCC 1319
|||||| | ||||||||| ||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 1249 GACTGGCTTTGCTGGTACATACAAATATGGAGGAAAGGCGTTTAAAGCAGCAGCTGCTCC 1308
Query 1320 ATCCGGTGCAAGTCTAGATGAGTGCCGGCGAGTAGCTATTAACGCACTCAAAGTCAATAA 1379
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 1309 ATCCGGTGCAAGTCTAGATGAATGCCGGCGAGTAGCTATTAATGCACTCAAAGTCAATGA 1368
Query 1380 TTCATTGTGTACACACATGAAATGCACTTTTGGTGGAGTATGGAATGGTGGAGGCGGTGG 1439
|||| |||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1369 TTCACTGTGCACACACATGAAATGCACATTCGGTGGAGTATGGAATGGTGGAGGCGGTGG 1428
Query 1440 TGGCCAGAAGAAAATGTTTGTTGCATCATTTTTCTTCGATCGAGCCGCAGAGGCTGGTTT 1499
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1429 TGGCCAGAAGAAAATGTTTGTGGCATCATTTTTCTTTGATCGAGCTGCAGAGGCTGGTTT 1488
Query 1500 TGTTGACCCAAACCAACCTGTGGCTGAGGTTCGACCACTTGACTTTGAGAAAGCGGCCAA 1559
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 TGTTGACCCAAAGCAACATGTGGCTGAGGTTCGACCACTTGACTTTGAGAAAGCGGCCAA 1548
Query 1560 CAAAGCTTGTAACATGAGAATGGAAGAAGGGAAATCGAAGTTCCCACGTGTGGAGGAAGA 1619
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1549 CAAAGCTTGTAGCATGAGAATGGAAGAAGGGAAATCGAAGTTCCCACATGTGGAGGAAGA 1608
Query 1620 TAATCTTCCTTACTTGTGCTTGGATCTTGTTTACCAATATACTCTTCTCGTCGATGGATT 1679
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1609 TAATCTGCCTTACTTGTGCTTGGATCTTGTTTACCAATATACTCTTCTGGTCGATGGATT 1668
Query 1680 CGGATTGAAGCCATCACAGACAATAACGTTAGTGAAGAAGGTGAAATACGGAGATTACGC 1739
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 TGGATTGAAGCCATCACAGACAATAACGTTAGTGAAGAAGGTGAAATACGGAGATTACGC 1728
Query 1740 CGTGGAAGCTGCGTGGCCACTAGGAAGCGCCATAGAAGCAGTATCCTCACCATGAGGA 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 CGTGGAAGCTGCGTGGCCACTAGGAAGCGCCATAGAAGCAGTATCCTCACCATGAGGA 1786
> Ahg941351 jgi|Araly1|941351|scaffold_601895.1
Length=1461
Score = 1447 bits (783), Expect = 0.0
Identities = 1234/1450 (85%), Gaps = 37/1450 (3%)
Strand=Plus/Plus
Query 367 GACGGAGGAAAAATGACGGCGAAGCGAGCGATCGGACGGCACGAATCCCTTGCTGACAAG 426
|||||||| || |||||||||||||| | ||| |||||||| ||||| ||||||||||||
Sbjct 10 GACGGAGGTAAGATGACGGCGAAGCGTGGGATTGGACGGCATGAATCTCTTGCTGACAAG 69
Query 427 GTCCATCGACATCGTGGTCTTCTACTTGTGATTTCGATCCCCATTGTGTTGATAGCTCTT 486
|||| || ||||||||||| | |||||||||||| | |||||||||||||| | |||
Sbjct 70 ATCCAACGCCATCGTGGTCTAATTCTTGTGATTTCGGTTCCCATTGTGTTGATCGGGCTT 129
Query 487 GTGCTTCTGTTAATGCCGGGGACG-TCGACGTCCG-TCTCTGTC-AT--CGAGTACAC-G 540
|| |||||| || |||| |||| | ||||| || | | || ||| | ||||| || |
Sbjct 130 GTTCTTCTGCTATTGCCTGGGA-GATCGACTTCTGAT-TCCGTCGTTGAAGAGTATACTG 187
Query 541 ATGAAAAACCACGAGGGAGGTTCC-AATTCGAGGGGTCCGAAGAATTACGCTGTGATTTT 599
|| | || | | | ||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 188 -TGCATAATCGCAAAGGAGG-TCCTAATTCGAGAGGTCCGAAGAATTACGCTGTGATTTT 245
Query 600 TGATGCTGGAAGTTCTGGAAGCCGTGTGCATGTTTACTGTTTCGATCAGAATTTGGATCT 659
|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 246 TGATGCTGGAAGTTCTGGTAGCCGTGTACATGTTTACTGTTTTGATCAGAATTTGGATCT 305
Query 660 TGTTCCTTT-GGAGAATGAGCTCGAGCTCTTCTTACAGCTAAAACC-GGGTTTAAGTGCA 717
| ||||| | || |||||| || ||||||||||||||||||||||| ||||| | | |||
Sbjct 306 TATTCCTCTCGG-GAATGAACTTGAGCTCTTCTTACAGCTAAAACCAGGGTTGA-GCGCA 363
Query 718 TATCCTAATGATCCTCGGCAATCAGCAAACTCTTTAGTAACTCTTCTGGACAAAGCAGAA 777
||||||| |||||| || ||| ||||||||||||| || ||||||| ||||||||||||
Sbjct 364 TATCCTACTGATCCCCGACAAGCAGCAAACTCTTTGGTGTCTCTTCTTGACAAAGCAGAA 423
Query 778 GCTTCCGTTCCCCGTGAGTTGCGTCCAAAGACTCCTGTCAGAGTTGGGGCAACTGCAGGT 837
||||| |||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 424 GCTTCTGTTCCCCGCGAGCTGCGTCCAAAGACACCTGTCAGAGTTGGGGCTACTGCAGGT 483
Query 838 TTGAG-A-GCTTTGGGTCACCAAGCCTCTGAAAACATTTTGCAAGCGGTTAGGGAGCTCC 895
||||| | ||| |||||| | || ||||| ||||||||||||||||||||||| |||
Sbjct 484 TTGAGGACGCT--GGGTCATGATGCATCTGAGAACATTTTGCAAGCGGTTAGGGAACTCT 541
Query 896 TCAAAGGTAGAAGTAGGCTGAAGACTGAGGCAAATGCAGTGACTGTTCTGGATGGTACTC 955
| | || |||||| | ||| ||||||||||||||||| || ||||| ||||||||||| |
Sbjct 542 TGAGAGATAGAAGCATGCTTAAGACTGAGGCAAATGCTGTTACTGTACTGGATGGTACCC 601
Query 956 AGGAAGGATCTTATCAGTGGGTGACAATTAATTACTTGCTAAGGA-CTTTGGGAAAGCCG 1014
| ||||| |||||||||||||| |||||||| ||||||||||||| ||| |||||| ||
Sbjct 602 AAGAAGGTTCTTATCAGTGGGTAACAATTAACTACTTGCTAAGGAACTT-GGGAAAACCA 660
Query 1015 TACTCGGACACAGTTGGAGTGGTTGATCTTGGAGGGGGGTCGGTTCAAATGGCATATGCT 1074
||||| || || || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 TACTCAGATACGGTAGGAGTGGTTGATCTTGGAGGGGGGTCTGTTCAAATGGCATATGCT 720
Query 1075 ATA-CCAGAGGAAGATGCTGCAACTGCACCAAAACCAGTAGAAGGCGAGGATTCTTATGT 1133
||| || |||||||||||||||| ||||||||||||| ||||||| |||||||| |||||
Sbjct 721 ATATCC-GAGGAAGATGCTGCAAGTGCACCAAAACCATTAGAAGGAGAGGATTCATATGT 779
Query 1134 CAGAGAAATGTATTTGAAGGGACGAAAGTATTTCCTCTATGTTCATAGCTACCTACATTA 1193
||||||||||||| |||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct 780 CAGAGAAATGTATCTGAAGGGACGGAAGTATTTCCTCTACGTTCACAGTTACCTACATTA 839
Query 1194 CGGGTTACTGGCTGCTCGGGCTGAGATTTTGAAAGTTTCTGAGGACTCTA-ACAACCCCT 1252
||| |||||||| || || || |||||||||||||||||||| || || | | |||||||
Sbjct 840 CGGATTACTGGCAGCCCGAGCAGAGATTTTGAAAGTTTCTGAAGATTC-AGAGAACCCCT 898
Query 1253 GTATCGCGACTGGATATGCTGGTACCTACAAATATGGAGGAAAAGCG--TTTAAAGCTGC 1310
| |||| | | || |||| ||||| ||||| ||||| ||||||| | |||||||| |
Sbjct 899 GCATCGTGGCAGGCTATGATGGTATGTACAAGTATGG-GGAAAAG-GAATTTAAAGCCCC 956
Query 1311 AGCTTCTCCATCCGGTGCAAGTCTAGATGAGTGCCGGCGAGTAGCTATTAACGCACTCAA 1370
||||| ||||| ||||| ||||| || |||||||| ||||| | || |||||||| ||
Sbjct 957 TGCTTCACCATCTGGTGCGAGTCTTGACGAGTGCCGAAGAGTAACCATCAACGCACTAAA 1016
Query 1371 AGTCAATAATTCATTGTGTACACACATGAAATGCACTTTTGGTGGAGTATGGAATGGTGG 1430
||| |||||| || |||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1017 AGTGAATAATACACTGTGTACACACATGAAATGCACATTCGGTGGAGTCTGGAATGGTGG 1076
Query 1431 AGGCGGTGGTGGCCAGAAGAAAATGTTTGTTGCATCATTTTTCTTCGATCGAGCCGCAGA 1490
| |||||||| || ||||| ||||||||||| || |||||||||||||| || || ||
Sbjct 1077 TCGAGGTGGTGGTCAAAAGAATATGTTTGTTGCTTCTTTTTTCTTCGATCGTGCTGCTGA 1136
Query 1491 GGCTGGTTTTGTTGACCCAAACCAACCTGTGGCTG-AGGTTCGACC-ACTTGACTTTGAG 1548
|||||| ||||||||||| || |||||||| ||| || |||| || | | |||||||||
Sbjct 1137 GGCTGGATTTGTTGACCCGAAGCAACCTGTTGCTACAG-TTCGTCCTA-TGGACTTTGAG 1194
Query 1549 AAAGCGGCCAACAAAGCTTGTAACATGA-GAATGGAAGAAGGGAAATCGAAGTTCCCACG 1607
||||| || || |||||||||| |||| | ||||||| |||||| |||| |||||||
Sbjct 1195 AAAGCAGCAAAGAAAGCTTGTAGTATGAAGC-TGGAAGAGGGGAAAGCGAAATTCCCACT 1253
Query 1608 TGTGGAGGAAGATAATCTT-CCTTACTTGTGCTTGGATCTTGTTTACCAATATACTCTTC 1666
|||||||||||| ||| || |||||||||||| ||||||| |||||||||||||||| |
Sbjct 1254 TGTGGAGGAAGAGAAT-TTGCCTTACTTGTGCATGGATCTCATTTACCAATATACTCTGC 1312
Query 1667 TCGTCGATGGATTCGGATTGAAGCCATCACAGACAATAACGTTAGTGAAGAAGGTGAAAT 1726
|| | ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1313 TCATTGATGGATTCGGCTTGGAGCCATCACAGACAATAACGTTAGTGAAGAAGGTCAAAT 1372
Query 1727 ACGGAGATTACGCCGTGGAAGCTGCGTGGCCACTAGGAAGCGCCATAGAAGCAGTATCCT 1786
||||||| | ||||||||||||||||||||| | || |||||||| || || |||||||
Sbjct 1373 ACGGAGACCAGGCCGTGGAAGCTGCGTGGCCATTGGGTAGCGCCATCGAGGCCGTATCCT 1432
Query 1787 CACCATGAGG 1796
|||| |||||
Sbjct 1433 CACCGTGAGG 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5