BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04090.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477669 jgi|Araly1|477669|fgenesh2_kg.3__370__AT3G04090.1 1347 0.0
> Ahg477669 jgi|Araly1|477669|fgenesh2_kg.3__370__AT3G04090.1
Length=919
Score = 1347 bits (729), Expect = 0.0
Identities = 883/951 (93%), Gaps = 36/951 (4%)
Strand=Plus/Plus
Query 1 GAGGAGAAAAATAGCTGTGAGAGAGAAAGCTAAAGAGGCGACGTACCACCCACCTAACCA 60
|||||||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 1 GAGGAGAAAAATAGCTGT----GACAAAGCTAAAGAGGCGACGT-------ACCTAACCA 49
Query 61 CAACCAGATCCCCAAAAGACAGAGAACTTTCTCGATACGAACGCCAAAGAGAAGAAGACG 120
||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 50 CAACCAGATCCCCAAAA-ACAGAGAAC-TTCTCGATACGAACGCC------------A-- 93
Query 121 AAGACGAAGATGATGGGTGTGTTGAAGTCGGCGATTGGGGATATGTTGATGACCTTCTCT 180
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 94 AAGA-GAAGATGATGGGTGTGGTGAAGTCGGCGATTGGGGATATGTTGATGACCTTCTCT 152
Query 181 TGGGTTGTCCTCTCCGCTACCTTTGGAATTCAGACGGCGGCGATTATCTCCGCCGGTGAT 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 153 TGGGTTGTCCTCTCCGCGACCTTTGGAATTCAGACGGCGGCGATTATCTCCGCCGGCGAT 212
Query 241 TTTCAGGCAATCACTTGGGCTCCGTTGGTGATTTTGACGTCGTTGATTTTCGTCTACGTC 300
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 213 TTTCAGGGAATCACTTGGGCTCCGTTGGTGATCTTGACGTCGTTGATTTTCGTCTACGTC 272
Query 301 TCGATCTTCACCGTTATCTTCGGTAGCGCTAGCTTCAATCCTACCGGAAGCGCTGCCTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 273 TCGATCTTCACCGTTATCTTCGGTAGCGCTAGCTTCAATCCTACCGGAAACGCCGCCTTT 332
Query 361 TATGTCGCCGGTGTCCCCGGAGATACTCTTTTCTCCTTGGCGATTAGATTACCTGCTCAG 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TATGTCGCCGGTATCCCCGGAGATACTCTTTTCTCCTTGGCGATTAGATTACCTGCTCAG 392
Query 421 GCAATTGGTGCTGCAGGAGGTGCATTGGCGATCATGGAGTTCATACCAGAGAAATACAAG 480
||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 393 GCAGCTGGTGCGGCAGGAGGTGCATTGGCCATCATGGAGTTCATACCAGAGAAATACAAG 452
Query 481 CATATGATTGGAGGTCCTTCTCTTCAGGTTGATGTGCACACTGGAGCTATTGCTGAAACG 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 453 CATATGATTGGAGGACCTTCTCTTCAGGTTGATGTGCACACTGGAGCTATTGCAGAAACG 512
Query 541 ATCTTAAGTTTTGGTATTACCTTTGCGGTTTTGCTAATTATCCTCAGGGGTCCACGGAGA 600
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 513 ATCTTAAGTTTTGGTATTACCTTTGCGGTTTTGCTAATTATCCTCCGTGGTCCACGGAGA 572
Query 601 TTGCTTGCTAAGACGTTCTTGCTTGCTCTTGCAACCATCTCATTTGTTGTCGCCGGATCT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 573 TTGCTTGCTAAGACGTTCTTGCTTGCTCTTGCAACCATCTCATTTGTTGTCGCCGGGTCT 632
Query 661 AAATACACTGGACCAGCCATGAATCCTGCCATTGCGTTTGGATGGGCATACATGTACAGC 720
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 633 AAATACACTGGACCAGCCATGAATCCTGCCATTGCATTTGGGTGGGCATACATGTACAGC 692
Query 721 TCCCACAACACATGGGACCATATCTACGTCTACTGGATCAGTTCTTTCGTAGGAGCATTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TCCCACAACACATGGGACCATATCTACGTCTACTGGATCAGTTCTTTCGTAGGAGCATTA 752
Query 781 TCTGCTGCATTGCTTTTCCGTTCTATCTTCCCGCCACCTCGGCCCCAGAAGAAGAAACAA 840
|||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 753 TCTGCTGCGTTGCTCTTCCGTTCCATCTTCCCTCCACCTCGGCCCCAGAAGAAGAAACAA 812
Query 841 AAGAAAGCCTGAGGAAAATAAAACAATTGGGAGAATACCGGTCAGATTCTTCACCGGTTT 900
|||||||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 813 AAGAAAGCCTGAGGAAAAC----CAGTTGGGAGAACACCGGTCAGATTCTTCACCGGTTT 868
Query 901 GGGCTGTAGAAAGA----TTCACAAAGCTGTTCCATTCTAAAATAAGGAGA 947
|||||||||||||| || | ||| ||||||||||| |||||||||||
Sbjct 869 GGGCTGTAGAAAGAAAGATTAAGAAAATTGTTCCATTCTTAAATAAGGAGA 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5