BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04100.1
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317287 jgi|Araly1|317287|fgenesh1_pm.C_scaffold_3000303 928 0.0
> Ahg317287 jgi|Araly1|317287|fgenesh1_pm.C_scaffold_3000303
Length=618
Score = 928 bits (502), Expect = 0.0
Identities = 579/616 (94%), Gaps = 5/616 (1%)
Strand=Plus/Plus
Query 10 ACGAAGCAAGCAAAGGGAAGAAAAACAAAGGGGAAGCAAAAGATCGAGATGAAGAAGGTG 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 ACGAAGCAAGCAAAGGGAAGAAAAACAAAGGGGAAGCAAAAGATCGAGATGAAGAAGGTG 66
Query 70 GAGAACTATGGAGATAGGATGATTACGTTCTCAAAACGTAAAACCGGAATTTTTAAGAAA 129
|| ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 67 GAAAACTATGGAGATAGGATGATTACGTTCTCGAAACGTAAAGCCGGAATTTTCAAGAAA 126
Query 130 ATGAACGAGCTCGTAGCAATGTGTGACGTTGAAGTGGCTTTCTTGATTTTCTCTCAACCC 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 127 ATGAACGAGCTCGTAGCAATGTGTGACGTTGAAGTGGCTTTCTTGATTTTCTCTCAAGCC 186
Query 190 AAGAAGCCCTATACATTCGCACATCCGTCTATGAAGAAAGTGGCTGACCGGTTAAAGAAC 249
|||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 187 AAGAAGCCGTATACATTCGCACATCCGTCTATGCAGGAAGTGGCTGACCGGTTAAAGAAC 246
Query 250 CCTTCGAGACAAGAACCATTAGAGAGAGACGATACCAGACCCCTCGTCGAAGCTTATAAG 309
|||||||||||||||||||||| || ||| ||||| |||||||||| ||||||||||||
Sbjct 247 CCTTCGAGACAAGAACCATTAGCGAAAGATGATACGGGACCCCTCGTGGAAGCTTATAAG 306
Query 310 AAACGAAGGCTCCACGACCTCGTaaaaaaaaTGGAGGCGCTCGAAGAGGAGCTTGCGATG 369
||||||||| |||| || ||| |||||||||||||||||||||| ||||||||| |||||
Sbjct 307 AAACGAAGGTTCCATGATCTCATAAAAAAAATGGAGGCGCTCGAGGAGGAGCTTACGATG 366
Query 370 GATCTAGAGAAGTTGAAACTGTTGAAGGAATCGAGAAATGAAAAGAAGTTAGATAAAATG 429
|||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 367 GATCTAGAGAAGCTGAAACTGCTGAAGGAATCGAGAAATGAAAAGAAGTTAGACAAAATG 426
Query 430 TGGTGGAACTTTCCTTCGGAAGGTTTGAGCGCGAAGGAGCTGCAGCAAAGGTACCAAGCG 489
|||||||||||||||||| |||| ||||||| | |||||||| |||||||| ||||||||
Sbjct 427 TGGTGGAACTTTCCTTCGAAAGGCTTGAGCGTGGAGGAGCTGAAGCAAAGGCACCAAGCG 486
Query 490 AT-GCTCGAGTTACGTGATAACTTATGCGACAATATGGCTCACTTACGATTGGGAAAAGA 548
|| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 487 ATTG-TCGAGTTACGTGATAACTTATGCGACAATATGGCTCTCTTACGATTGGGAAAAGA 545
Query 549 CTGTGGTGGTTCATCTTCTGTTCGTGTGGGACGTCGAGTTTCTGGTGGTGTTCGTCTGTT 608
| | | ||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 546 C-G-G-TGGTTCATCTTCTGTTCGTGTGGGACGTCGACTGTCTGGTGGTGTTCGTCTGTT 602
Query 609 CGATCGTGAAGCATGA 624
||||||||||||||||
Sbjct 603 CGATCGTGAAGCATGA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5