BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04110.1
Length=2629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477672 jgi|Araly1|477672|fgenesh2_kg.3__373__AT3G04110.1 2165 0.0
Ahg315594 jgi|Araly1|315594|fgenesh1_pm.C_scaffold_2000627 246 5e-64
> Ahg477672 jgi|Araly1|477672|fgenesh2_kg.3__373__AT3G04110.1
Length=2575
Score = 2165 bits (1172), Expect = 0.0
Identities = 1338/1416 (94%), Gaps = 19/1416 (1%)
Strand=Plus/Plus
Query 1218 AAGAAGACAGATTGTTTGGCCTGGCAGGTCTCGTAAGATCCCAAGACACCGTGTTTTGGC 1277
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1175 AAGAAGACAGATTGTTTGGCCTGGCGGGTCTCGTAAGATCCCAAGACACCGTGTTTTGGC 1234
Query 1278 AGAGAAAGGTGAAAAGAAGGTGCTTAGGGTCTTAGTTACCGCAGGAAACAAGGTCCCGCA 1337
|||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1235 AGAGAATGGTGAAAAGAAAGTGCTTAGGATCTTAGTTACCGCAGGAAACAAGGTCCCGAA 1294
Query 1338 TCTAGTGTCGGTGCGTCCTGATCCTGAAACAGGTGTTAATACTGTCTCTGGATTCTGCGT 1397
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1295 TCTAGTGTCGGTGCGTCCTGATCCTGAAACAGGTGTTAATACAGTCTCAGGATTCTGCGT 1354
Query 1398 AGAGGTTTTCAAGACTTGCATTGCTCCTTTTAACTACGAGCTTGAATTCATACCTTACCG 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1355 AGAGGTTTTCAAGACTTGCATTGCTCCTTTTAACTACGAGCTTGAATTCATACCTTATCG 1414
Query 1458 TGGAAACAATGACAATCTTGCTTATCTACTTTCTACTCAGAGAGACAAGTATGATGCAGC 1517
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1415 TGGAAACAATGACAATCTTGCTTATCTACTCTCTACTCAGAGTGACAAATATGATGCAGC 1474
Query 1518 AGTTGGTGATATCACCATCACTTCCAACAGATCTTTGTATGTTGATTTTACTTTGCCGTA 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1475 AGTTGGTGATATCACCATCACTTCCAACAGATCTTTGTATGTTGATTTTACTTTGCCTTA 1534
Query 1578 CACTGACATTGGTATTGGAATCTTGACAGTGAAAAAGAAAAGCCAAGGGATGTGGACCTT 1637
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 1535 CACAGACATTGGTATTGGAATCTTGACAGTAAAAAAGAAAAGCCAAGGAATGTGGACTTT 1594
Query 1638 CTTTGATCCTTTCGAAAAATCCTTGTGGCTAGCAAGTGGAGCTTTCTTTGTCTTAACTGG 1697
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1595 CTTTGATCCTTTTGAAAAATCCTTGTGGCTAGCAAGTGGAGCTTTCTTCGTCTTGACTGG 1654
Query 1698 GATTGTTGTTTGGTTAGTTGAACGGTCCGTTAATCCGGAATTTCAGGGCTCTTGGGGACA 1757
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 GATTGTTGTTTGGTTGGTTGAACGGTCCGTTAATCCGGAATTTCAGGGCTCTTGGGGACA 1714
Query 1758 ACAACTTAGTATGATGCTCTGGTTTGGTTTCTCAACCATTGTATTTGCTCACAGAGAGAA 1817
||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1715 ACAGCTTAGTATGATGCTCTGGTTTGGATTCTCTACCATTGTGTTTGCTCACAGAGAGAA 1774
Query 1818 GCTACAGAAAATGTCATCAAGATTCTTAGTCATAGTTTGGGTTTTTGTGGTGTTAATATT 1877
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1775 GCTACAAAAAATGTCATCAAGATTCCTAGTCATAGTTTGGGTTTTTGTGGTGTTAATATT 1834
Query 1878 GACTTCAAGTTACAGCGCAAACTTGACATCAACCAAGACCATTTCTCGCATGCAATTAAA 1937
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1835 GACTTCAAGTTACAGCGCAAATTTGACATCAACCAAGACCATTTCTCGCATGCAATTAAA 1894
Query 1938 TCATCAGATGGTTTTCGGGGGATCTACGACGTCAATGACTGCGAAGCTCGGATCCATTAA 1997
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1895 TCATCAGATGGTTTTCGGGGGATCTACAACGTCAATGACTGCGAAGCTCGGATCCATTAA 1954
Query 1998 TGCAGTTGAGGCCTATGCACAACTTTTGCGAGATGGAACTCTTAATCATGTCATCAATGA 2057
|||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1955 TGCAGTTGAGGCATATGCACAACTTTTACGAGATGGAACTCTTAGTCATGTCATCAATGA 2014
Query 2058 AATACCTTATCTCAGTATCCTTATCGGAAATTATCCGAATGATTTCGTAATGACAGATAG 2117
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2015 AATACCGTATCTCAGTATCCTTATCGGAAATTATCCCAATGATTTCGTAATGACTGATAG 2074
Query 2118 AGTGACTAATACCAATGGCTTTGGCTTTATGTTCCAGAAAGGTTCGGATTTGGTTCCTAA 2177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2075 AGTGACTAATACCAATGGCTTTGGCTTTATGTTCCAGAAAGGTTCGGATTTGGTTCCTAA 2134
Query 2178 AGTATCGCGAGAAATCGCGAAGCTAAGATCATTGGGAATGTTGAAAGACATGGAGAAAAA 2237
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 2135 AGTATCGCGAGAAATCGCGAAGCTAAGGTCATTGGGAATGCTGAAAGACATGGAGAAAAA 2194
Query 2238 ATGGTTTCAAAAACTGGATTCACTAAATGTACATTCCAACACCGAGGAAGTTGCATCTAC 2297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2195 ATGGTTTCAAAAACTGGATTCACTAAATGTACATTCCAACACCGAGGAAGTTGCATCTAC 2254
Query 2298 CAACGACGATGATGAGGCATCTAAGCGATTCACCTTCCGTGAGTTGCGCGGTTTGTTCAT 2357
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2255 CATCGACGATGATGAGGCATCTAAGCGATTCACCTTCCGAGAGTTGCGCGGTTTGTTCAT 2314
Query 2358 CATTGCGGGAGCTGCTCATGTTCTCGTACTAGCCCTACATCTCTTTCATACGCGTCAAGA 2417
||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct 2315 CATTGCGGGAGTTGCTCATGTTCTAGTACTAGCCCTGCATCTCTTTCATATGCGTCAAGA 2374
Query 2418 GGTATCACGACTATGCACCAAACTTCAAAGCTTCTATAAGTAAAAAGTGATCCATCGTTC 2477
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2375 GGTATCACGACTATTCACCAAACTTCAAAGCTTCTATAAGTAAAAAGTGATCCATCATTC 2434
Query 2478 ATAAGCTCTACTATAGCAATTGA-CGGGACAGGACTC-AT-AAGTAACAACAAAGTACAC 2534
|||||||||| |||||||| ||| ||||| |||| | | |||| || || ||| ||
Sbjct 2435 ATAAGCTCTAGTATAGCAACTGATCGGGAGAGGAGTGGACCAAGT--CAT-AA-GTA-AC 2489
Query 2535 TTCGAAACAAATTTCA-CATGTAATACTTGtttttttttCCCGTTTAAATTCACATGTAA 2593
|| |||| || |||||||||||||||||| || || ||||||||||||||
Sbjct 2490 ----AA-CAAAGCACAACATGTAATACTTGTTTTT----CC-GTAGAAATTCACATGTAA 2539
Query 2594 TAATTTAATTCACGTAAATACTAAAGTGATTCACCC 2629
|||||||| |||||||||||||||| | ||||||||
Sbjct 2540 TAATTTAACTCACGTAAATACTAAAATTATTCACCC 2575
Score = 1731 bits (937), Expect = 0.0
Identities = 1104/1185 (93%), Gaps = 10/1185 (1%)
Strand=Plus/Plus
Query 2 AGCGAACGTTACAGAGCTATACAAGAAATTATATGGAGATTCTGTTTTCTATTTCCATTC 61
|||||||| |||| ||||||||||||| ||| |||||||||||| |||||||| ||||||
Sbjct 1 AGCGAACGGTACAAAGCTATACAAGAAGTTAAATGGAGATTCTGATTTCTATTGCCATTC 60
Query 62 TTGCTCTTCTCTTTTCCGGAGTAGTAGCTGCTCC-AAGCGACGATGATGTTTTCGAAGAG 120
||||||||||||||||| | |||||||||| ||| || |||| |||| ||||||||||
Sbjct 61 TTGCTCTTCTCTTTTCCAGTGTAGTAGCTGGTCCTAA-CGAC---GATGCTTTCGAAGAG 116
Query 121 GTTAGGGTTGGATTGGTGGTTGACTTGAGTTCTATACAAGGCAAGATTCTGGAAACTTCT 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 117 GTTAGGGTTGGATTGGTGGTTGACTTGAGTTCTACACAAGGCAAGATTCTGGTAACATCT 176
Query 181 TTTAACTTAGCGCTTTCAGATTTCTATGGCATCAACAATGGATACCGAACCAGAGTCTCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CTTAACTTAGCGCTTTCAGATTTCTATGGCATCAACAATGGATACCGAACCAGAGTCTCT 236
Query 241 GTTTTGGTCAGAGACTCCCAAGGAGACCCGATCATTGCTCTTGCCGCCGCTACTGATCTT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATTTTGGTCAGAGACTCCCAAGGAGACCCGATCATTGCTCTTGCCGCCGCTACTGATCTT 296
Query 301 CTCAAAAATGCAAAAGCGGAAGCCATTGTTGGTGCACAATCATTACAAGAGGCAAAGCTT 360
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 297 CTCAAAAATGCAAAAGTGGAAGCCATTGTTGGTGCACAATCATTACAGGAAGCAAAGCTT 356
Query 361 TTGGCGACGATTAGCGAAAAAGCTAAAGTTCCGGTCATATCTACTTTCTTGCCAAACACG 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 357 TTGGCGACGATTAGCGAAAAAGCTAACGTTCCGGTCATATCTACTTTCTTGCCAAACACG 416
Query 421 TTATCTTTGAAGAAATACGATAACTTTATTCAATGGACGCATGATACTACATCAGAGGCT 480
||||||||||| ||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 417 TTATCTTTGAACAAATACGATCACTTTATTCAATGGACGCATGATACGACGTCAGAGGCT 476
Query 481 AAGGGAATTACAAGTCTCATACAAGATTTCAGTTGTAAATCGGTTGTGGTTATATACGAG 540
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAGGGGATTATGAGTCTCATACAAGATTTCAGTTGTAAATCGGTTGTGGTTATATACGAG 536
Query 541 GATGCTGATGATTGGAGTGAGAGTTTGCAAATATTGGTTGAGAATTTTCAAGATAAAGGA 600
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GATGCTGATGACTGGAGAGAGAGTTTGCAAATATTGGTTGAGAATTTTCAAGATAAAGGA 596
Query 601 ATCTATATCGCTCGTTCTGCTTCTTTTGCAGTCTCATCATCAGGAGAAAATCATATGATG 660
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATCCATATCGCTCGTTCTGCTTCTTTTGCAGTCTCATCATCAGGAGAAAATCATATGATG 656
Query 661 AATCAGCTAAGGAAGCTTAAGGTCTCAAGAGCATCGGTTTTTGTGGTGCATATGTCCGAG 720
||||||||||||||||| ||||| |||||| || | ||||| |||||||||||||| |||
Sbjct 657 AATCAGCTAAGGAAGCTCAAGGTATCAAGAACAACAGTTTTCGTGGTGCATATGTCTGAG 716
Query 721 ATTCTTGTTTCTCGTCTCTTCCAATGTGTAGAGAAGTTAGGTTTGATGGAAGAAGCGTTC 780
|||||||||||||||| || | ||| || |||||||||||||||| |||||||| |||
Sbjct 717 TTTCTTGTTTCTCGTCTTTTTCGATGCGTTGAGAAGTTAGGTTTGACGGAAGAAGGGTTT 776
Query 781 GCTTGGATCCTCACTGCAAGAACCATGAACTACTTGGAACATTTTGCAATAACTAGGTCG 840
|||||||||||||||| ||||||||||||||||||||| |||||| || ||| |||||
Sbjct 777 GCTTGGATCCTCACTGTGAGAACCATGAACTACTTGGAATATTTTGAAACAACCAGGTCA 836
Query 841 ATGCAAGGGGTCATTGGTTTCAAATCTTACATCCCTGTATCTGAAGAAGTTAAGAATTTT 900
|||||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||||
Sbjct 837 ATGCAAGGGGTCATTGGTTTCAAACCTTACATTCCTGTATCCGAAGAAGTTACGAATTTT 896
Query 901 ACTTCAAGATTGAGGAAACGTATGGGAGATGATACAGAAACAGAGCATTCTAGTGTAATC 960
||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||
Sbjct 897 ACTTCAAGATTGAAGAAACTTATGGGTGATGATACAGAAACAGAGCATTCTAGTAAAATC 956
Query 961 ATCGGTTTACGCGCACACGATATCGCTTGTATTCTAGCAAATGCAGTAGAGAAG-TTCAG 1019
||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| || ||
Sbjct 957 ATCGGTTTACGAGCACACGATATAGCTTGTATTCTAGCAATTGCAGTAGAGAAGATT-AG 1015
Query 1020 TGTAAGTGGTAAAGTTGAAGCATCTTCGAATGTATCAGCTGATCTTCTGGATACAATTAG 1079
|||||| ||||||| ||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 1016 TGTAAGAGGTAAAGCTGAAGCATCTTCGAATGTATCAG---ATCTTCTTAAGACAATTAG 1072
Query 1080 ACATAGTAGATTCAAGGGTTTGAGTGGTGACATCCAAATCTCTGACAACAAATTTATCTC 1139
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1073 AAATAGTAGATTCAAGGGTTTGAGTGGTGTCATCCAAATCTCTGACAACAAATTTATCTC 1132
Query 1140 AGAGACATTTGAAATCGTGAATATTGGAAGAGAAAAACAGAGAAG 1184
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AGAGACATTTGAAATCGTGAATATTGGAAGAGAAAAACAGAGAAG 1177
> Ahg315594 jgi|Araly1|315594|fgenesh1_pm.C_scaffold_2000627
Length=2478
Score = 246 bits (133), Expect = 5e-64
Identities = 512/683 (75%), Gaps = 74/683 (11%)
Strand=Plus/Plus
Query 557 GTGAG-AG-TTTGCAAATATTGGTTGAGAATTTTCAAGATAAAGGAATCTATAT-CGCTC 613
||||| || ||||||||||||||| || |||| |||||| ||| || | || | | |
Sbjct 523 GTGAGAAGTTTTGCAAATATTGGTGGATCATTTCCAAGATGGTGGAGTCCAAATCCAC-C 581
Query 614 GTTCTGCTTCTTT-TGCAGTCTCATCATC-AGGA-GAAAATCATATGATGAATCAGCTAA 670
|| || ||||||| | ||| |||||| | | || ||| || | ||| | |||| |||
Sbjct 582 GTACTACTTCTTTCT-CAGAATCATCA-CTA-GACGAAGATTACATGGTCTATCA-CTAC 637
Query 671 GGAAGCTTAAGGT-CTCAAGAGCATCGGTTTTTGTGGTGCATATGTCCGAGATTCTTGTT 729
||||||| || || | | |||||| | ||||| | || |||||||| ||||||||||||
Sbjct 638 GGAAGCTCAA-GTCCGCGAGAGCAGCCGTTTTCATTGTACATATGTCGGAGATTCTTGTT 696
Query 730 TCTCGTCTCTTCCAATGTGTAGAGAAGTTAGGTTTGATGGAAGAAGCG-T-TCGCTTGGA 787
||||||||||||||||||| || || ||||| ||||| |||||| | | | | |||||
Sbjct 697 TCTCGTCTCTTCCAATGTGCGGATAAATTAGGAATGATGAAAGAAG-GATAT-GTTTGGA 754
Query 788 TCCTCACTGCAAGAACCATGAA-C-T----A---CTTGGAACATTTTGCAATAACTAGGT 838
| ||||| |||||||||||||| | | | ||| || ||||||| | |||||
Sbjct 755 TACTCACCGCAAGAACCATGAATCATTTTCATAACTTAGATGGTTTTGCAGT---TAGGT 811
Query 839 CGATGCAAGGGGTCATTGGTTTCAAATCTTACATCCCTGTATCTGAAGAAGTTAA-GAAT 897
| |||||||||||||||||||||| ||| ||||| || ||||| ||| | || || ||||
Sbjct 812 CAATGCAAGGGGTCATTGGTTTCAGATCATACATTCCAGTATCAGAACATGT-AACGAAT 870
Query 898 TTTACTTCAAGATTGAGGAAACGTA-TGG--GA-GATGATAC---A--GA-A-ACA--GA 944
||||||||||||||| | ||| || ||| || ||||| || | || | | | ||
Sbjct 871 TTTACTTCAAGATTGCGAAAAT-TAATGGTTGATGATGACACCGCACAGATAGAAACTGA 929
Query 945 GCATTCTAGTGTAATCATCGGTTTACGCGCACACGATATCGCTTGTATTCTAGCAAATGC 1004
||||| |||||| | ||| || || | ||||| ||||| |||||||||||||||| |||
Sbjct 930 GCATTTTAGTGTTGTGATCAGTGTATGGGCACATGATATTGCTTGTATTCTAGCAACTGC 989
Query 1005 AGTAGAGAAGTTCAGTGTAAGTGGTAAAGTTGAAGCATCTTCGAATGTATCAGCTGATCT 1064
||||||||| | | | | | | ||| | | || ||| |||| |||| ||||
Sbjct 990 AGTAGAGAA-T--A-TCT--G-GCTAA-G---A-GCCTCT---AATGAATCAA---ATCT 1031
Query 1065 TCTGGATACAATTAGACATAGTAGATTCAAGGGTTTGAGT---GGTGACATCCAAATC-T 1120
||| || || |||| ||| ||| |||| |||||||||||| |||||||| |||||| |
Sbjct 1032 TCTTGAGACGATTAAACAGAGTGGATTTAAGGGTTTGAGTCATGGTGACATGCAAATCGT 1091
Query 1121 CTGACAACAAATTTATCTCAGAGA-CATTTGAAATCGTGAATATTGGAAGAGAAAAACAG 1179
|| |||||||| | ||| || || ||||||| || |||||||| || || ||| | |
Sbjct 1092 -TGGCAACAAATATCTCTTAG-GAACATTTGAGATTGTGAATAT-GGTAG-GAACAGGGG 1147
Query 1180 --AGAAGGATAGGATTATGGAGT 1200
|| || |||||||||||||||
Sbjct 1148 TTAGGAGAATAGGATTATGGAGT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99148907735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5