BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04120.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477673 jgi|Araly1|477673|fgenesh2_kg.3__374__AT3G04120.1 2274 0.0
Ahg471499 jgi|Araly1|471499|fgenesh2_kg.1__1453__AT1G13440.1 1312 0.0
> Ahg477673 jgi|Araly1|477673|fgenesh2_kg.3__374__AT3G04120.1
Length=1429
Score = 2274 bits (1231), Expect = 0.0
Identities = 1372/1437 (95%), Gaps = 22/1437 (2%)
Strand=Plus/Plus
Query 1 CTCCACGTTCTTCTCTCTTTTAAATA-ACCTCTTCACGGAACCCTtctcactcacctatc 59
|||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 1 CTCCACGTTCTTCTCTCTTTTAAATAGACC-CTTCACGG-ACCCTTCTCACTCACCTATC 58
Query 60 tcactctaaaatctctctctgccaatctcatcttcaacctctc-t-cta-actctcGTTT 116
||||| ||||||||||||||| |||||||||||||||||||| | | | |||| |||||
Sbjct 59 TCACTGTAAAATCTCTCTCTGTGAATCTCATCTTCAACCTCTCTTAC-ACACTCGCGTTT 117
Query 117 TCGATTC-TACAATGGCTGACAAGAAGATTAGGATCGGAATCAACGGATTCGGAAGAATT 175
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 TCGATTCAAACAATGGCTGACAAGAAGATTAAGATCGGAATCAACGGATTCGGAAGAATC 177
Query 176 GGTCGTTTGGTTGCTAGAGTTGTTCTCCAGAGGGACGATGTTGAGCTCGTCGCTGTCAAC 235
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 178 GGTCGTTTGGTTGCTAGAGTTGTTCTTCAGAGGGACGATGTTGAGCTCGTCGCTGTTAAC 237
Query 236 GACCCCTTCATCACTACTGAGTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGT 295
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 238 GACCCCTTCATCACCACTGAGTACATGACCTACATGTTCAAGTATGACAGTGTTCACGGT 297
Query 296 CAATGGAAACACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CAATGGAAACACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAG 357
Query 356 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCT 417
Query 416 GACTACGTTGTTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCAGCTCACTTG 475
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 418 GACTATGTTGTTGAGTCTACCGGTGTCTTCACTGACAAAGACAAGGCTGCCGCTCACTTG 477
Query 476 AAGGGTGGTGCCAAGAAGGTTGTTATCTCTGCCCCCAGCAAAGACGCTCCAATGTTTGTT 535
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 478 AAGGGTGGGGCCAAGAAGGTTGTCATCTCTGCCCCCAGCAAAGACGCTCCCATGTTTGTT 537
Query 536 GTTGGTGTCAACGAGCACGAATACAAGTCCGACCTTGACATTGTCTCCAACGCTAGCTGC 595
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 GTTGGTGTCAACGAGCACGAATACAAGTCCGACCTTGACATCGTCTCCAACGCTAGCTGC 597
Query 596 ACCACTAACTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGATTTGGAATTGTTGAG 655
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 598 ACCACTAACTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGGTTTGGAATTGTTGAA 657
Query 656 GGTCTTATGACTACAGTCCACTCAATCACTGCTACTCAGAAGACTGTTGATGGGCCTTCA 715
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 658 GGTCTTATGACAACAGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCA 717
Query 716 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGA 777
Query 776 GCTGCCAAGGCTGTCGGAAAGGTGCTTCCAGCTCTTAACGGAAAGTTGACTGGAATGTCT 835
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 778 GCTGCCAAGGCTGTCGGAAAGGTGCTTCCAGCCCTTAACGGAAAGTTGACCGGCATGTCT 837
Query 836 TTCCGTGTCCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTCCGTGTCCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCT 897
Query 896 GCTACCTACGATGAAATCAAAAAGGCTATCAAGGAGGAATCCGAAGGCAAACTCAAGGGA 955
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 898 GCTACCTATGATGAAATCAAAAAGGCTATCAAGGAGGAATCTGAAGGCAAACTCAAGGGA 957
Query 956 ATCCTTGGATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGCGACAACAGGTCG 1015
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 ATTCTTGGATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGTGACAACAGGTCG 1017
Query 1016 AGCATTTTTGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAATTGGTGTCA 1075
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 AGCATATTTGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAACTGGTGTCA 1077
Query 1076 TGGTACGACAACGAATGGGGTTACAGTTCCCGTGTGGTCGACTTGATCGTCCACATGTCA 1135
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1078 TGGTACGACAACGAATGGGGTTACAGTTCTCGAGTGGTCGACTTGATCGTTCACATGTCA 1137
Query 1136 AAGGCCTAAGCTAAGAAGCAGATCTCGAATGAT-AGGGAGTGGAAAGTCATCTGTTCATC 1194
||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 1138 AAGGCCTAAGCTAAGAAGCAGATCTCGAACGACGAGG-AGTGGAAAGTCATCTGTTCATC 1196
Query 1195 CCCTTTTATGGTCTGAATTTGTCGTTTTCGAATAAAATTTCTTTGAACTTGGAAC--ttt 1252
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1197 CTCTTTTATGGTCTGAATTTGTCGTTTTCGAATAAAATTTCTTTGAACTTGGAACCCTTT 1256
Query 1253 tttttttttt--GGTTTTCTTAATTCTCATTCATGTGAGGTGATGGGAGTTTGTAGACCG 1310
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 TTTTTTTTTTTTGGTTTTCTTAATTCTCATTCATGTGAGTTGATGGGAGTTTGTAGACCG 1316
Query 1311 ATGTTTTACTGGAAGCCCTTT-GTTTTTGGCTTTTGATATATTGAGTTAACGTTATGGTT 1369
|||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1317 GTGTTTTACTG-AAGCCCTTTCGTTTTTGGCTTTTGATATATTGAGTTA-C-TTATGGTT 1373
Query 1370 TT-CAATTTTGT-TCCACTTCTCTTTTTAACTATATACTAAATCAAATCTGAACGAA 1424
|| || |||||| || |||||||||||| |||||||||||||||||||||||||||
Sbjct 1374 TTTCA-TTTTGTCTC-ACTTCTCTTTTTTTCTATATACTAAATCAAATCTGAACGAA 1428
> Ahg471499 jgi|Araly1|471499|fgenesh2_kg.1__1453__AT1G13440.1
Length=1361
Score = 1312 bits (710), Expect = 0.0
Identities = 920/1023 (90%), Gaps = 8/1023 (1%)
Strand=Plus/Plus
Query 127 AATGGCTGACAAGAAGATTAGGATCGGAATCAACGGATTCGGAAGAATTGGTCGTTTGGT 186
|||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||
Sbjct 121 AATGGCTGACAAGAAGATCAGAATCGGAATCAACGGTTTCGGAAGAATCGGTCGTTTGGT 180
Query 187 TGCTAGAGTTGTTCTCCAGAGGGACGATGTTGAGCTCGTCGCTGTCAACGACCCCTTCAT 246
||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 181 TGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTCAACGATCCTTTCAT 240
Query 247 CACTACTGAGTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGTCAATGGAAACA 306
||| || ||||||||||| |||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 241 CACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGTCAGTGGAAGCA 300
Query 307 CAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAGCCAGTCACTGT 366
| ||||||| ||| |||||||||| || || |||||||||||||||||||||||||||||
Sbjct 301 CCATGAACTTAAGGTCAAGGATGATAAAACTCTTCTCTTCGGTGAGAAGCCAGTCACTGT 360
Query 367 TTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCTGACTACGTTGT 426
|||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||
Sbjct 361 TTTCGGCATCAGGAACCCTGAGGAGATCCCATGGGGTGAGGCTGGAGCTGACTTTGTTGT 420
Query 427 TGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCAGCTCACTTGAAGGGTGGTGC 486
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 421 TGAGTCTACTGGTGTCTTCACTGACAAGGACAAGGCAGCTGCTCACTTGAAGGGTGGTGC 480
Query 487 CAAGAAGGTTGTTATCTCTGCCCCCAGCAAAGACGCTCCAATGTTTGTTGTTGGTGTCAA 546
|| |||||||| |||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct 481 TAAAAAGGTTGTCATCTCTGCGCCAAGCAAAGATGCTCCCATGTTTGTCGTTGGTGTCAA 540
Query 547 CGAGCACGAATACAAGTCCGACCTTGACATTGTCTCCAACGCTAGCTGCACCACTAACTG 606
||||| ||||||||||| || ||||||||||| ||||| ||||| ||||||||||||||
Sbjct 541 TGAGCATGAATACAAGTCTGATCTTGACATTGTTTCCAATGCTAGTTGCACCACTAACTG 600
Query 607 CCTTGCTCCCCTTGCCAAGGTTATCAATGACAGATTTGGAATTGTTGAGGGTCTTATGAC 666
||||||||| |||||||||||||| || ||||||||||| ||||||||||| || |||||
Sbjct 601 CCTTGCTCCTCTTGCCAAGGTTATTAACGACAGATTTGGGATTGTTGAGGGACTCATGAC 660
Query 667 TACAGTCCACTCAATCACTGCTACTCAGAAGACTGTTGATGGGCCTTCAATGAAGGACTG 726
|| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 661 CACTGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCAATGAAGGACTG 720
Query 727 GAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGAGCTGCCAAGGC 786
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 721 GAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGTGCCGCCAAGGC 780
Query 787 TGTCGG-AAAGGTGCTT-CCAGCTCTTAACGGAAAGTTGACTGGAATGTCTTTCCGTGTC 844
||| || |||| || || ||| | || || ||||| |||||||||||||||||||||||
Sbjct 781 TGTTGGCAAAG-TG-TTGCCATCCCTCAATGGAAAATTGACTGGAATGTCTTTCCGTGTT 838
Query 845 CCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCTGCTACCTAC 904
|||||||||||||||||||||||||| || || || ||||| ||||||||||| || |||
Sbjct 839 CCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCTGCAACATAC 898
Query 905 GATGAAATCAAAAAGGCTATCAAGGAGGAATCCGAAGGCAAACTCAAGGGAATCCTTGG- 963
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||
Sbjct 899 GATGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAACTGAAGGGAATT-TTGGG 957
Query 964 ATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGCGACAACAGGTCGAGCATTTT 1023
||||||||||||||||||||| || |||||||| || || ||||||||||| ||||| ||
Sbjct 958 ATACACCGAGGATGATGTTGTGTCTACTGACTTTGTCGGTGACAACAGGTCAAGCATATT 1017
Query 1024 TGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAATTGGTGTCATGGTACGA 1083
|| || ||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1018 CGATGCTAAGGCAGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCATGGTACGA 1077
Query 1084 CAACGAATGGGGTTACAGTTCCCGTGTGGTCGAC-TTGATCGTCCACATGTCAAAGGCCT 1142
|||||| |||||||||||||| ||||| |||||| || ||||| ||||||||||||||||
Sbjct 1078 CAACGAGTGGGGTTACAGTTCTCGTGTCGTCGACCTT-ATCGTTCACATGTCAAAGGCCT 1136
Query 1143 AAG 1145
|||
Sbjct 1137 AAG 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5