BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G04140.1

Length=2280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927953 jgi|Araly1|927953|scaffold_300410.1                        375    6e-103
  Ahg927952 jgi|Araly1|927952|scaffold_300409.1                        246    5e-64 


> Ahg927953 jgi|Araly1|927953|scaffold_300410.1
Length=280

 Score =  375 bits (203),  Expect = 6e-103
 Identities = 231/245 (94%), Gaps = 0/245 (0%)
 Strand=Plus/Plus

Query  1742  GTCGTGTTCCTCTCAGAGAGATGTATTCTCCGTCGTCTTGTAGCAGAGGAAAAGCGTTTC  1801
             |||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||
Sbjct  1     GTCGTGTTCCTCTCAGAGAGATTTATTCGCCGTCGTCTTGTAACAAAGGAAAAGCGTTTC  60

Query  1802  CGATGAGAACAGAGAGTGGTGATCTTCCGAGTTTATCGGTGAGACTTAAATTCACACAAG  1861
             ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct  61    CGATGAGAACAGAGAGTGGTGATCTCCCGAGTTTATCGGTGAGGCTGAAATTCACACAAG  120

Query  1862  GGTTAATGAAAGGAGTGGTGGTTCAGGAATCTCCGAGGTTCGTGTTTTCTCCTCCGGCTG  1921
             |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct  121   GGTTAATGAAAGGAGTCGTGGTTCAGGAATCTCCGAGGTTCGTGTTTTCGCCTCCCGCGG  180

Query  1922  TATCCGATTACTCTCGAGCTCCGTCGTCGGCTTGTTCGACGCCGTTTCAGACGTTTTCTT  1981
             |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct  181   TATCCGATTACTCTCGAGCTCCGTCGTCGGCTTGTTCGTCACCGTTTCAGACGGTTTCTT  240

Query  1982  CGGAA  1986
             |||||
Sbjct  241   CGGAA  245


> Ahg927952 jgi|Araly1|927952|scaffold_300409.1
Length=219

 Score =  246 bits (133),  Expect = 5e-64
 Identities = 149/157 (95%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  1564  AGTCCAGACAGAGAGAGTTTTGATGGAATTAGTGAGTGTTCAACTGAAATTTCGACGCAT  1623
             ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct  39    AGTCCAGACAGAGAGAGTTTTGATGGAATCAGTGAGTGTTCGACTGAAATCTCGACGCAT  98

Query  1624  TCGAAACGCAAACGCCGCGGTGGCGGCGGTACAGGAGCGCGTCTTAAGCTTCTTTTACGG  1683
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  99    TCGAAACGCAAACGCCGCGGTGGTGGCGGTACAGGAGCGCGTCTTAAGCTTCTTTTACGG  158

Query  1684  TGGGCGAAGAGGGAAGAATCAGAAGAAAATCGTCGTT  1720
             |||||||||||||||||||| || || ||||| ||||
Sbjct  159   TGGGCGAAGAGGGAAGAATCGGAGGAGAATCGCCGTT  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 85855412230


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5