BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04150.2 Length=805 Score E Sequences producing significant alignments: (Bits) Value Ahg477677 jgi|Araly1|477677|fgenesh2_kg.3__378__AT3G04150.1 928 0.0 > Ahg477677 jgi|Araly1|477677|fgenesh2_kg.3__378__AT3G04150.1 Length=750 Score = 928 bits (502), Expect = 0.0 Identities = 687/772 (89%), Gaps = 30/772 (4%) Strand=Plus/Plus Query 8 GGaaaa-aaaCCACACAAACATTTTATTAGAATATAATGAAAGGTCTTGTTCAGTTTCTT 66 |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1 GGAAAACAAACCACACAAACATTTTATTTCAATATGATGAAAGGTCTTGTTCAGTTTCTT 60 Query 67 GTAGCTAAAATCATCTTGTTGGTTTTAGCATCTACATTTGTACATTGTTACGATCCAAAT 126 |||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| Sbjct 61 GTAGCTAAAATCATCTTGTTGGCTTTAGCATCTTCATTTGTATATTGTTACGATCCAAAT 120 Query 127 CCTCTCCAAGAC--TACTGTGTTGCCACCAACGGAACTAATAGAGCTGAAACCCAATATA 184 ||||| |||||| ||||||||||||||||||| ||||||| ||| | | || Sbjct 121 CCTCTTCAAGACTATACTGTGTTGCCACCAACGAAACTAATGGAG-T---------T-TA 169 Query 185 GGTTCTCAAGAATCTCAACCAGTGTTTTTGTGAATGGAAAGTTTTGTAAAGATCCAAAAC 244 ||| | | | | | |||||| ||||||||||||||||||||||||||||||| Sbjct 170 TGTT-T---G--TGT-TGGC--TGTTTTCGTGAATGGAAAGTTTTGTAAAGATCCAAAAC 220 Query 245 TAGTAACTGCCAATGAttttttttATTCTGGCCTAAACATTCCCGGAAACACCAGCAACC 304 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 221 TAGTAACTGCCAATGATTTTTATTATTCTGGCCTAAACATTCCCGGAAACACCAACAACC 280 Query 305 GCCTTGGTGCATCGGTCACCGATGTTGATGTCAGAAGAATCCCTGGTCTCAACACTCTTG 364 ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||| Sbjct 281 GCCTTGGCGCATCGATCACTAATGTTGATGTCAGCTTAATCCCTGGTCTCAACACTCTTG 340 Query 365 GCATTGCCATTGCCCGCTTGGATTTCGCCCCCGGCGGTCAACTTCCACCGCACATACATC 424 | |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | Sbjct 341 GGGTTGCCATTGCCCGCTTAGATTTCGCCCCCGGCGGTCAACTTTCACCGCACATACACC 400 Query 425 CACGTGCCTCCCAGATCATCTTAGTCCTCAAGGGACAGCTCTCGGTCGGATTTGTGTCGT 484 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 401 CACGTGCCTCCCAGATCATCTTAGTCCTCAAGGGAGAGCTCTCAGTCGGATTTGTGTCGT 460 Query 485 CGAACGACTACAACTATACGCTCTTTTCC-AAGATTCTTTACCCCGGAGATGTGTTTGCT 543 | ||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||| | | Sbjct 461 CAAACGAATACAACTATACGCTCTTTTCCAAAG-TTCTTTATCCCGGAGATGTGTTGGTT 519 Query 544 TTTCCCATCGGTTTGGTACAGTTCCATGCTAAC-AC--TGGGAAGACACATGCGGTTGCG 600 ||||||||||||||||||||||| ||||| ||| || | ||||||| ||||||||||| Sbjct 520 TTTCCCATCGGTTTGGTACAGTTTCATGCAAACAACAATAAGAAGACAAATGCGGTTGCG 579 Query 601 ATTGGCGTAGT-CGGGAGTCAAGACCCCGGTGTGATCCCAATAGGTGACGCGGTTTTCGG 659 ||| ||| | | |||||||||| ||||||||||||||||| ||||| ||||||||||||| Sbjct 580 ATTAGCGCA-TACGGGAGTCAAAACCCCGGTGTGATCCCAGTAGGTAACGCGGTTTTCGG 638 Query 660 GTCGAATCCTTTGATTGATCCAAAGCTTTTGGCTAAAGCTTTTGCGTTGGACGTGAACAT 719 ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 639 GTCAAACCCCTTGATTGATCCAAAGCTTTTGGCTAAAGCTTTTGCGTTGGACGTGAACAT 698 Query 720 AGTGCGTCATGTTCAGAGGGTGTTTTCTTCCGAAGGTTACATAGTTAAATAG 771 |||||| ||||| |||||||||||||||||||| | | |||||||||| ||| Sbjct 699 AGTGCGACATGTCCAGAGGGTGTTTTCTTCCGATGCTGACATAGTTAATTAG 750 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29735875260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5