BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04150.2
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477677 jgi|Araly1|477677|fgenesh2_kg.3__378__AT3G04150.1 928 0.0
> Ahg477677 jgi|Araly1|477677|fgenesh2_kg.3__378__AT3G04150.1
Length=750
Score = 928 bits (502), Expect = 0.0
Identities = 687/772 (89%), Gaps = 30/772 (4%)
Strand=Plus/Plus
Query 8 GGaaaa-aaaCCACACAAACATTTTATTAGAATATAATGAAAGGTCTTGTTCAGTTTCTT 66
|||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 GGAAAACAAACCACACAAACATTTTATTTCAATATGATGAAAGGTCTTGTTCAGTTTCTT 60
Query 67 GTAGCTAAAATCATCTTGTTGGTTTTAGCATCTACATTTGTACATTGTTACGATCCAAAT 126
|||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 61 GTAGCTAAAATCATCTTGTTGGCTTTAGCATCTTCATTTGTATATTGTTACGATCCAAAT 120
Query 127 CCTCTCCAAGAC--TACTGTGTTGCCACCAACGGAACTAATAGAGCTGAAACCCAATATA 184
||||| |||||| ||||||||||||||||||| ||||||| ||| | | ||
Sbjct 121 CCTCTTCAAGACTATACTGTGTTGCCACCAACGAAACTAATGGAG-T---------T-TA 169
Query 185 GGTTCTCAAGAATCTCAACCAGTGTTTTTGTGAATGGAAAGTTTTGTAAAGATCCAAAAC 244
||| | | | | | |||||| |||||||||||||||||||||||||||||||
Sbjct 170 TGTT-T---G--TGT-TGGC--TGTTTTCGTGAATGGAAAGTTTTGTAAAGATCCAAAAC 220
Query 245 TAGTAACTGCCAATGAttttttttATTCTGGCCTAAACATTCCCGGAAACACCAGCAACC 304
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 221 TAGTAACTGCCAATGATTTTTATTATTCTGGCCTAAACATTCCCGGAAACACCAACAACC 280
Query 305 GCCTTGGTGCATCGGTCACCGATGTTGATGTCAGAAGAATCCCTGGTCTCAACACTCTTG 364
||||||| |||||| |||| ||||||||||||| |||||||||||||||||||||||
Sbjct 281 GCCTTGGCGCATCGATCACTAATGTTGATGTCAGCTTAATCCCTGGTCTCAACACTCTTG 340
Query 365 GCATTGCCATTGCCCGCTTGGATTTCGCCCCCGGCGGTCAACTTCCACCGCACATACATC 424
| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct 341 GGGTTGCCATTGCCCGCTTAGATTTCGCCCCCGGCGGTCAACTTTCACCGCACATACACC 400
Query 425 CACGTGCCTCCCAGATCATCTTAGTCCTCAAGGGACAGCTCTCGGTCGGATTTGTGTCGT 484
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 401 CACGTGCCTCCCAGATCATCTTAGTCCTCAAGGGAGAGCTCTCAGTCGGATTTGTGTCGT 460
Query 485 CGAACGACTACAACTATACGCTCTTTTCC-AAGATTCTTTACCCCGGAGATGTGTTTGCT 543
| ||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||| | |
Sbjct 461 CAAACGAATACAACTATACGCTCTTTTCCAAAG-TTCTTTATCCCGGAGATGTGTTGGTT 519
Query 544 TTTCCCATCGGTTTGGTACAGTTCCATGCTAAC-AC--TGGGAAGACACATGCGGTTGCG 600
||||||||||||||||||||||| ||||| ||| || | ||||||| |||||||||||
Sbjct 520 TTTCCCATCGGTTTGGTACAGTTTCATGCAAACAACAATAAGAAGACAAATGCGGTTGCG 579
Query 601 ATTGGCGTAGT-CGGGAGTCAAGACCCCGGTGTGATCCCAATAGGTGACGCGGTTTTCGG 659
||| ||| | | |||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 580 ATTAGCGCA-TACGGGAGTCAAAACCCCGGTGTGATCCCAGTAGGTAACGCGGTTTTCGG 638
Query 660 GTCGAATCCTTTGATTGATCCAAAGCTTTTGGCTAAAGCTTTTGCGTTGGACGTGAACAT 719
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GTCAAACCCCTTGATTGATCCAAAGCTTTTGGCTAAAGCTTTTGCGTTGGACGTGAACAT 698
Query 720 AGTGCGTCATGTTCAGAGGGTGTTTTCTTCCGAAGGTTACATAGTTAAATAG 771
|||||| ||||| |||||||||||||||||||| | | |||||||||| |||
Sbjct 699 AGTGCGACATGTCCAGAGGGTGTTTTCTTCCGATGCTGACATAGTTAATTAG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29735875260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5