BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04160.2
Length=2610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477678 jgi|Araly1|477678|fgenesh2_kg.3__379__AT3G04160.1 3118 0.0
Ahg952002 jgi|Araly1|952002|scaffold_28800005.1 300 4e-80
Ahg927847 jgi|Araly1|927847|scaffold_300304.1 294 2e-78
> Ahg477678 jgi|Araly1|477678|fgenesh2_kg.3__379__AT3G04160.1
Length=2456
Score = 3118 bits (1688), Expect = 0.0
Identities = 2253/2513 (90%), Gaps = 90/2513 (4%)
Strand=Plus/Plus
Query 36 CCGTCGCCGGAACTCATGGATCGACCACCGTCGTTGCCACACTATCAAAACCCTAATCCG 95
||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1 CCGTCGCCGGAACTCATGGATCGACCACCGTCGTTTCCTCACTATCAACACCCTAATCCG 60
Query 96 AACCTCTTCTACCAC-TATCCTCCTCCAAATTCTAATCCTAATTTCTTCTTCCGACCTCC 154
||| ||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 AACTTCTTCCACCACGT-TCCTCCTCCAAATCCTAATCCTAATTTCTTCTTCCGACCTCC 119
Query 155 TCCACCTCCTCTTCAAAATCCTAACAATTACTCCATCG-T--TCCGTCTCCGCCGCCGAT 211
|||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 120 TCCACCTCATCTTCAAAATCCTAACAATTACTCCATCGCTCCTCCGTCTCCGCCGCCGAT 179
Query 212 TCGCGAGCTCTCCGGTACACTCTCTTCTTTAAAATCCCTGTTGTCAGAATGTCAAAGAAC 271
|||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 180 TCGCGAGCTCTCCGGTACACTCACTTCTTTACAATCCCTGTTGTCGGAATGTCAAAGAAC 239
Query 272 CTTAGATTCTCTCTCGCAAAATCTAGCTTTAGATCACTCTTCTCTTCTCCAGAAGGACGA 331
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 240 CTTAGATTCCCTCTCGCAAAATCTAGCTTTAGACCACTCTTCTCTTCTCCACAAGGACGA 299
Query 332 AAATGGCTGTTTTGTTCGTTGCCCTTTTGATTCAAATCACTTTATGCCACCTGAAGCTCT 391
||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 300 AAATGGCGGTTTCGTTCGTTGCCCTTTCGATTCAAATCACTTAATGCCACCTGAAGCTCT 359
Query 392 CTTTCTTCATTCACTTCGTTGCCCAAATACTCTTGACCTCATTCATCTTCTTGAATCCTT 451
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 360 CTTTCTTCATTCACTTCGTTGCCCAAATCCTCTTGACCTCACTCATCTTCTTGGATCCTT 419
Query 452 TAGTAGTTACCGGAACACGCTCGAGTTACCATGTGAACTACAGTTGAACAACGGTGATGG 511
|||| ||||||||||||||||||||||||||||||||||||||||||| || | | ||
Sbjct 420 TAGTTGTTACCGGAACACGCTCGAGTTACCATGTGAACTACAGTTGAATAA---TAACGG 476
Query 512 TGATCTCTGTATCTCTTTAGATGACTTGGCCGATTTTGGGAGCAATTTCTTCTACCGAGA 571
|||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 477 TGATCTCTGTGTCTCTTTAGATGACTTGGCTGATTTTGGGAGAAATTTCTTCTACAGAGA 536
Query 572 TTGTCCAGGAGCTGTTAAATTCTCTGAGCTCGATGGaaaaaaaCGAACTTTAACACTTCC 631
|||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||
Sbjct 537 TTGTCCAGGAGCTGTTAACTTCTCTGAGCTCGATGGTAAAAAGCCAACTTTAACACTTCC 596
Query 632 TCATGTTCTATCTGTGGAATGTAGCGATTTTGTAGGTTCTGATGAGAAGGTGAAAAAG-A 690
| ||||||||||||||||||| | ||||||||||| |||||||||||||| | ||| | |
Sbjct 597 TAATGTTCTATCTGTGGAATGCAACGATTTTGTAGTTTCTGATGAGAAGGAG-AAAGGTA 655
Query 691 TTGTCTTGGATAAATGCTTA-GGAGTCTTACCGTCTGATCTTTGTGCAATGAAGAATGAG 749
| | ||||||||||| ||| ||| | |||||||||||||| |||||||| |||| ||||
Sbjct 656 GTATGTTGGATAAATGGTTAGGGA-TTTTACCGTCTGATCTCTGTGCAATAAAGAGTGAG 714
Query 750 ATTGATCAATGGAGGGATTTCCCAAGTTCGTATTCCTCTAGTGTTCTTTCTTCGATTGTG 809
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 715 ATTAATCAATGGAGGGATTTCCCAAGTTCGTATTCCTATAGTGTTCTTTCTTCGATTGTG 774
Query 810 GGTTCAAAAGTGGTTGAAATAAGTGCA-TTGAGGAAATGGATTCTGGTTAATTCGACGAG 868
|||||||||| | ||| || || | | ||||||| ||||||||||||||| ||||||||
Sbjct 775 GGTTCAAAAGCGATTGCAACGAGCG-AGTTGAGGACATGGATTCTGGTTAAGTCGACGAG 833
Query 869 ATATGGTGTTATAATTGATACATTCATGAGGGATCATATATTCTTACTCTTTCGGTTGTG 928
||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 834 ATATGGTGTCATAATCGATACATTCATGAGGGATCATGTATTCTTGCTCTTTCGGTTGTG 893
Query 929 TCTCAAATCTGCTGTGAAAGAAGCTTGTGGATTTAGGATGGAGTCTGATGCTACTGATGT 988
||||||||| |||||||||||||||||| || || ||| ||||||||||||| || |||
Sbjct 894 TCTCAAATCGGCTGTGAAAGAAGCTTGTAGA-TT--GATAGAGTCTGATGCTAATGCTGT 950
Query 989 TGGTGAGCAGAAGATTATGAGCTGCAAGAGTAGTACATTTGAGTGTCCAGTCTTCATTCA 1048
||||||| || |||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 951 TGGTGAGAAGCAGATTATGAGCTGCAAAAGTAGAACATTTGAGTGTCCAGTCTTGATTCA 1010
Query 1049 AGTCTTGTCTTGGTTAGCTTCTCAACTTGCTGTCTTGTATGGAGAAGGAAATGGGAAGTT 1108
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1011 AGTGTTGTCTTGGTTAGCTTCTCAACTTGCTGTCTTGTATGGAGAAGGAAATGGCAAGTA 1070
Query 1109 TTTTGCTTTGGACATGTTTAAACAGTGCATAGTAGAATCTGCCTCTCAGGTAATGTTGTT 1168
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1071 TTTTGCTTTGGACATGTTTAAACAGTGCATAGTAGAATCTGCCTTTCGGGTAATGTTGTT 1130
Query 1169 CCGGTTAGAAGGAACTAGATCTAAATGCTCTGGAGTTGTCGAGGATTTGGATGATGCAAG 1228
| || ||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1131 TCAGTCAGAAGGAACAAGACCTAAATGCTCTGGAGTTCTCGAGGATTTGGATGATCCAAG 1190
Query 1229 GTTGAGAAATAAGGATGTGATCATGGAGAAGCCCTTTGAGAATAGTTCAGGTGGGGAATG 1288
||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 1191 CTTGAGTAATAAGGATGTGAAGATGGAGAAGCCCTTTGAAAATAGTTCAGGTGGGGAAGG 1250
Query 1289 TGGCAAAACTTTGGACAGTCCACAGGTGATATCTGTGTCCCGTGTTTCAGCAGCTGTTGC 1348
|||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct 1251 TGGCAAAACTTTGGACAGTCCACAGGTGATTTCTGTGTCTCGTGTTGCAGCAGCTGTTGC 1310
Query 1349 AGCTTTGTATGAAAGATCCTTGCTTGAAGAAAAAATAAGGGCAGTTCGATATGCCCAACC 1408
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1311 AGCTTTGTATGAAAGATCCTTGCTTGAAGGAAAAATAAGGGCAGATCGATATGCCCAACC 1370
Query 1409 ACTAACGAGATATCAGCGCATCATTTCATGTTTGCATTTGAGTT-TGATTCCTCATGATG 1467
|||||||||||||||||| | | || || || | ||| ||| || | | ||
Sbjct 1371 ACTAACGAGATATCAGCGGG-CGG--C-TGA--GC-TTGGTGTTATGACAGCTAAAGCTG 1423
Query 1468 TCTCTG-AACGGAATAGACGTTGTAGCTACCGACCTATTATTGATCATGATGGTCGTCCG 1526
| | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1424 A-TGAGGAACGGAATAGACGTTGTAGCTACCGACCTATTATTGATCATGACGGTCTTCCG 1482
Query 1527 AGACAACGCTCATTAAATCAGGATATGGATAAAATGAAGACAAGGGAAGAGCTTTTAGCT 1586
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1483 AGACAACGCTCATCAACTCAGGATATGAATAAAATGAAGACAAGGGAAGAGCTTTTAGCA 1542
Query 1587 GAAGAGAGAGATTATAAGCGTCGTCGAATGTCATACCGTGGAAAGAAGGTGAAACGAACG 1646
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1543 GAAGAGAGAGATTATAAGCGTCGGAGAATGTCATACCGTGGAAAGAAGGTGAAACGAACG 1602
Query 1647 CCTCGACAGGTCTTACATGATATGATAGAAGAATATACAGAAGAAATTAAGCTAGCAGGA 1706
||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1603 CCTCGACAGGTGTTACATGATATAATAGAAGAATATACAGAAGAAATTAAGTTAGCAGGA 1662
Query 1707 GGTATTGGATGTTTTGAGAAAGGAATGCCATTACAATCCCGGTCTCCTATAGGCAACGAC 1766
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1663 GGTATTGGGTGTTTTGAGAAAGGAATGCCATTACAATCCCCGTCTCCTATAGGCAGCGAT 1722
Query 1767 CAGAAAGAAAGTGACTTTGGATACAGTA-TACCATCAACAGATAAGCAATGGAAAGGAGA 1825
||||||||||||||||||||||||| || | | | || || |||||||||||||||||||
Sbjct 1723 CAGAAAGAAAGTGACTTTGGATACAATACTGC-ACCACCATATAAGCAATGGAAAGGAGA 1781
Query 1826 GAACCGTGCAGATATTGAATATCCAATCGATAATAGACAA-AATTCAGATAAAGTAAAGC 1884
||||||||||| ||||||||||||||| ||| ||||| || |||||||||||||||||||
Sbjct 1782 GAACCGTGCAGCTATTGAATATCCAATGGATGATAGA-AACAATTCAGATAAAGTAAAGC 1840
Query 1885 GACATGATGAGTATGATTCAGGTAGCTCGCAGAGACAGCAGAGTCACAGATCATATAAGC 1944
| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1841 GGCATGTTGAGTATGATTCAAGTAGCTCGCAGAGACAACAGAGTCACAGATCATATAAGC 1900
Query 1945 ACAGTGATCGAAGAGATGACAAGCTCCGTGATCGAAGAAAGGACAAGCACAATGATCGAA 2004
|| ||||||||||||||||||||| | ||||||| ||| | | ||| | ||
Sbjct 1901 ACGGTGATCGAAGAGATGACAAGCACAGTGATCGTAGA--G-A---------TGA-C-AA 1946
Query 2005 GAGATGACGAATTCACAAGGACCAAACGACATAGCATTGAAGGGGAATCTTATCA---AA 2061
| | | |||||||| | ||||||||||| ||||| || |||||||||| ||
Sbjct 1947 -A--T------T-CACAAGGAGCGAACGACATAGCCTTGAAAGGAAATCTTATCATCGAA 1996
Query 2062 ACTACAGATCATCTCGTGAGAAGAGTTCTTCAGATTATAAGACCAAAAGGGATGATCCTT 2121
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 ACCACAGATCATCTCGTGAGAAGAGTTCTTCAGATTATAAGACCAAAAGGGATGATCCTT 2056
Query 2122 ATGACCGCCGCAGTCAGCAACCTAGGAATCAAAATT-TGTTTGAAGATAGATACATACCA 2180
||||||||||||||| | ||||||| |||||||||| | |||||||||||||||||||||
Sbjct 2057 ATGACCGCCGCAGTCGGGAACCTAGAAATCAAAATTCT-TTTGAAGATAGATACATACCA 2115
Query 2181 ACAGAAAAAGAGTGAACTTAAAAGAAGTAAAAGTGTACCTGGAGCATCAGCAATTATGTG 2240
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2116 ACAGAAAGGGAGTGAACTTAAAAGAAGTAAAAGTTTACCTGGAGCATCAGCAATTATGTG 2175
Query 2241 TGAATCCGTATCCTCTTTTGTATCCTTAACCAAATTTTTACCTTCTCTT-ATACATCTCA 2299
||||||||||||||||||||||||||||||||| ||||| |||||| || || ||||| |
Sbjct 2176 TGAATCCGTATCCTCTTTTGTATCCTTAACCAATTTTTTTCCTTCT-TTGATGCATCTAA 2234
Query 2300 -------C----T-T-GGTGATACTCTCAAATTTCCAGCTGTCTAGATTCACTGTAGTTA 2346
| | | ||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2235 GTGTTAACCAAATGTTGGTGATATTCTCAAATTTCCAGCTATCTAGATTCACTGTAGTTG 2294
Query 2347 CCATTCCCGTCTAG---ATATGTTTTCAGTTTCTTTTT-CGTCTATGGTTGTGACAGATT 2402
||||||| |||| | |||| |||||||||||||||| | ||| |||||||||||||||
Sbjct 2295 CCATTCCTGTCT-GTCTATATATTTTCAGTTTCTTTTTTCTTCTTTGGTTGTGACAGATT 2353
Query 2403 GAAGTTAATTGAAGTATGTTTTTGCTGTGAACAAGCCATGAGCCGTGAGATTGCTGGGAA 2462
|||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 2354 GAAGTTAATTCAAGTATGTTCTTGCTATGAACAAGCCATGAGCCATGAGATTGCTGGGAA 2413
Query 2463 GAAATGGTAAACTCCACAAGTGTTTGTAATTGTGAGAGACTGCAATGTTTTAA 2515
||| || |||||||| | ||||||||||||||||||||||||||
Sbjct 2414 GAAGTGCCAAACTCCA----T------AATTGTGAGAGACTGCAATGTTTTAA 2456
> Ahg952002 jgi|Araly1|952002|scaffold_28800005.1
Length=331
Score = 300 bits (162), Expect = 4e-80
Identities = 207/228 (91%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 36 CCGTCGCCGGAACTCATGGATCGACCACCGTCGTTGCCACACTATCAAAACCCTAATCCG 95
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 6 CCGTCGCCGGAACTCATGGATCGACCACCGTCGTTTCCACACTATCAAATCCCTAATCCG 65
Query 96 AACCTCTT-CTACCAC-TATCCTCCTCCAAATTCTAATCCTAATTTCTTCTTCCGACCTC 153
||| | || | | ||| | |||||||||||| ||||||||||||||||| |||||||||
Sbjct 66 AACTTGTTTC-ATCACGT-TCCTCCTCCAAACCCTAATCCTAATTTCTTCGTCCGACCTC 123
Query 154 CTCCACCTCCTCTTCAAAATCCTAACAATTACTCCATCGTTCCGTCTCCGCCGCCGATTC 213
||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 124 CTCTAGCTCATCTTCAAAATCCTAACAATTACTCCATCG--CCGTCTCCGCCGCCGATTT 181
Query 214 GCGAGCTCTCCGGTACACTCTCTTCTTTAAAATCCCTGTTGTCAGAAT 261
||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 182 GCGAGCTCTCCGGTACAATCTCTTCTTTACAATCCCTGTTGTCGGAAT 229
> Ahg927847 jgi|Araly1|927847|scaffold_300304.1
Length=331
Score = 294 bits (159), Expect = 2e-78
Identities = 205/227 (90%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 36 CCGTCGCCGGAACTCATGGATCGACCACCGTCGTTGCCACACTATCAAAACCCTAATCCG 95
||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct 6 CCGTCGCCGGAACTCATGGATCGACGACCGTCGTTTCCACACTATCAAATCCCTAATCCG 65
Query 96 AACCTCTTCTACCAC-TATCCTCCTCCAAATTCTAATCCTAATTTCTTCTTCCGACCTCC 154
||| | ||| | ||| | |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 66 AACTTGTTCCATCACGT-TCCTCCTCCAAACCCTAATCCTAATTTCTTCGTCCGACCTCC 124
Query 155 TCCACCTCCTCTTCAAAATCCTAACAATTACTCCATCGTTCCGTCTCCGCCGCCGATTCG 214
|| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 125 TCTAGCTCATCTTCAAAATCCTAACAATTACTCCATCG--CCGTCTCCGCCGCCGATTTG 182
Query 215 CGAGCTCTCCGGTACACTCTCTTCTTTAAAATCCCTGTTGTCAGAAT 261
|||||||||||||||| |||||| |||| ||||||||||||| ||||
Sbjct 183 CGAGCTCTCCGGTACAATCTCTTTTTTACAATCCCTGTTGTCGGAAT 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98425193080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5