BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04170.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918706 jgi|Araly1|918706|Al_scaffold_0492_1 885 0.0
Ahg477679 jgi|Araly1|477679|fgenesh2_kg.3__380__AT3G04180.1 442 2e-123
> Ahg918706 jgi|Araly1|918706|Al_scaffold_0492_1
Length=639
Score = 885 bits (479), Expect = 0.0
Identities = 591/643 (92%), Gaps = 16/643 (2%)
Strand=Plus/Plus
Query 95 GCTTTAGCATCTTCGTTTGTCTCTTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 154
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 60
Query 155 GCCGTCCC-CGaaaa-aaaCGGAGTTTTCGTAAATGGA-GAATTCTGCAAAGATCCAAAA 211
||| || ||||| ||| |||||||||||||||||| || ||||||||||||||||||
Sbjct 61 GCCA-CCAACGAAACTAAA-GGAGTTTTCGTAAATGGAAGA-TTCTGCAAAGATCCAAAA 117
Query 212 CTAGTAACATC-AGATGATTTCTTTGCTTCTGGCCTTAACATCCCGGGAAACACCAACAA 270
||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 118 CTAGTAACATCCA-ATGATTTCTTTGCTTCTGGACTTAACATCCCGGGAAACACCAGCAA 176
Query 271 ACGCCTTGGCTCCTTTGTGAACCCCGCTAATATCCCCGGTCTCAACACTCTTGGGGTCGG 330
|||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 177 CCGCCTTGGCTTCTTTGTCAACCCCGCTAATATCCCTGGTTTCAACACTCTTGGGGTCGC 236
Query 331 CATCGCCCGTATTGACTTTGCCCCTGGTGGTCTAATCCCACCGCACATACATCCACGCGC 390
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 237 CATCGCCCGCATTGACTTTGCCCCTGGTGGTCAAATCCCACCGCACATACATCCACGCGC 296
Query 391 CTCCGAGATCATCTTAGTCATCAAGGGAAAGCTCCTAGTCGGTTTTGTATCGTCGAACGA 450
|||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 297 CTCCGAGATCCTCCTAGTCATCAAGGGCAAGCTCCTAGTCGGTTTTGTGTCGTCGAACGA 356
Query 451 CTACAACTACACACTCTTCTCCAAAATTCTTTATCCCGGAGATGTGTTTGTTCATCCC-A 509
|||||||||||||| |||||||||||||||||||| |||||||| |||||| |||| |
Sbjct 357 GTACAACTACACACTTTTCTCCAAAATTCTTTATCCGGGAGATGTATTTGTTT-TCCCCA 415
Query 510 TCGGATTGGTACAATTTCATGCAAACATAGGGAAGACAAATGCGGTTGCGATTGGGGCGG 569
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 416 TCGGATTGGTACAATTTCATGCAAACATAGGGAAGAAAAATGCGATTGCGATTGGGGCGG 475
Query 570 TTGGGAGCCAAAATCCTGGTTAT-ATCTCGGTAGGTGATGCAGTTTTCGGGTCGAAGCCT 628
||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||
Sbjct 476 TTGGGAGCCAAAATCCTGGTT-TCATCTCGGTAGGTGATGCAGTTTTCGGGTCGAGGCCT 534
Query 629 CCGATTGACCCAAAGATTTTGGCTAAAGCTTTTGCGTTGGACATCAATATAGTAAGATAT 688
||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| ||||||
Sbjct 535 TCGATTGATCCAAAGATTTTATCTAAAGCTTTTGCGTTGGATATCAACATAGTGAGATAT 594
Query 689 CTTCGAAAAGT---GTTTTCTCCTCAAGATGATATCGTT-AAT 727
||||| | ||| ||||||||||||||||||||||||| |||
Sbjct 595 CTTCGGACAGTACTGTTTTCTCCTCAAGATGATATCGTTGAAT 637
> Ahg477679 jgi|Araly1|477679|fgenesh2_kg.3__380__AT3G04180.1
Length=730
Score = 442 bits (239), Expect = 2e-123
Identities = 555/700 (79%), Gaps = 51/700 (7%)
Strand=Plus/Plus
Query 37 GAAAAACAAAAAGATGAAATATCCTT-TTCAGTGTT-TTCTAGCTAAAATCATTTTGCTG 94
|||||| ||||| ||| || | ||| | || | || || ||||||||||||||||| ||
Sbjct 2 GAAAAAAAAAAAAATGGAAGGT-CTTCTGCACT-TTCTTTTAGCTAAAATCATTTTGGTG 59
Query 95 GCTTTAGCATCTTCGTTTGTCTCTTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 154
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 60 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 119
Query 155 GCCGTCCC-CGaaaaaaaCGGAGTTT-TCGTAAATGGAGAA-TTCTGCAAAGATCCAAAA 211
||| || ||||| || ||||||| | ||||||||| || ||||||||||||||||||
Sbjct 120 GCCA-CCAACGAAACTAATGGAGTTTAT-GTAAATGGA-AAGTTCTGCAAAGATCCAAAA 176
Query 212 C-TAGTAAC-ATCAGA-TGATTTCTTTGCTTCTGGCCTTAA-CATCCCGGGAAACACCAA 267
| ||||| | | || |||||||| | |||| ||| |||| | |||| ||||||||||
Sbjct 177 TGT-GTAACGA-C-GAATGATTTCTATACTTCCGGC-TTAAACGTCCCCGGAAACACCAG 232
Query 268 CAAACG--CCTTGGCTCCT---T-----T-GTGAACCCCGCTAATA-TCCCCGGTCTCAA 315
|| || || |||||| | | ||| | || || | | || ||||||||
Sbjct 233 CAT-CGGTCCC-GGCTCCAAAATCACCGTCGTGGATGTCGA-AAGAATGCCTGGTCTCAA 289
Query 316 CACTCTTGGGGTCGGCATCGCCCG-TATTGACTTTGCCCCTGGTGGTCTA-ATCCCACCG 373
|||||||||||||| ||| ||||| ||| ||||| ||||| ||||||||| | ||||||
Sbjct 290 CACTCTTGGGGTCGACATTGCCCGCTAT-GACTTCGCCCCGGGTGGTCTAGA-CCCACCT 347
Query 374 CACATACATCCACGCGCCT-CCGAGATCATCTTAGTCATCAAGGGAAAGCTCCTAGTCGG 432
|||| ||| || || | | || ||||| |||||||||| ||||| ||||| | || ||
Sbjct 348 CACACACACCCGCGTGGCAGCC-AGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGG 406
Query 433 TTTTGTATCGTCGAACGACTACAACTACACACTCTTCTCCAAAATTCTTTATCCCGGAGA 492
||||| |||||||| || ||||||||||| |||||| ||||| |||||||||| |||||
Sbjct 407 ATTTGTGTCGTCGAATGAATACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGA 466
Query 493 TGTGTTTGT-TCATCCCATCGGATTGGTACAATTTCATGCAAACATAGGGAAGACAAATG 551
||| ||||| | ||||| || ||| |||| |||||||| || | |||||||||||||
Sbjct 467 TGTATTTGTGTT-TCCCAAAGGTTTGATACATTTTCATGCGAATTTTGGGAAGACAAATG 525
Query 552 CGGTTGCGATTGGGGCGGTTGGGAGCCAAAATCCTGGTTAT-ATC-TCGGTAGGTGATGC 609
|||||| |||| |||| |||||||||| | || ||| | ||| | ||||||||||
Sbjct 526 CGGTTGTGATTTCTGCGGCTGGGAGCCAAGAGCCCGGT-AGGATCATAA-TAGGTGATGC 583
Query 610 AGTTTTCGGGTCGAAGCCTCCGATTGA-CCCAAAGATTTTGGCTAAAGCTTTTGCGTTGG 668
|||||||| ||||| ||| |||||| ||||| | ||||||||||||||||||||||||
Sbjct 584 GGTTTTCGGATCGAAACCTTTGATTGATCCCAAGG-TTTTGGCTAAAGCTTTTGCGTTGG 642
Query 669 ACATCAATATAGT-AAGATATCTTC-GAAAAGTGTTTTCT 706
|| | || | ||| || |||||||| | | |||||||||
Sbjct 643 ACTTGAACAAAGTGAA-ATATCTTCAGGCA-GTGTTTTCT 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5