BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04170.1 Length=877 Score E Sequences producing significant alignments: (Bits) Value Ahg918706 jgi|Araly1|918706|Al_scaffold_0492_1 885 0.0 Ahg477679 jgi|Araly1|477679|fgenesh2_kg.3__380__AT3G04180.1 442 2e-123 > Ahg918706 jgi|Araly1|918706|Al_scaffold_0492_1 Length=639 Score = 885 bits (479), Expect = 0.0 Identities = 591/643 (92%), Gaps = 16/643 (2%) Strand=Plus/Plus Query 95 GCTTTAGCATCTTCGTTTGTCTCTTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 154 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 60 Query 155 GCCGTCCC-CGaaaa-aaaCGGAGTTTTCGTAAATGGA-GAATTCTGCAAAGATCCAAAA 211 ||| || ||||| ||| |||||||||||||||||| || |||||||||||||||||| Sbjct 61 GCCA-CCAACGAAACTAAA-GGAGTTTTCGTAAATGGAAGA-TTCTGCAAAGATCCAAAA 117 Query 212 CTAGTAACATC-AGATGATTTCTTTGCTTCTGGCCTTAACATCCCGGGAAACACCAACAA 270 ||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 118 CTAGTAACATCCA-ATGATTTCTTTGCTTCTGGACTTAACATCCCGGGAAACACCAGCAA 176 Query 271 ACGCCTTGGCTCCTTTGTGAACCCCGCTAATATCCCCGGTCTCAACACTCTTGGGGTCGG 330 |||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||| Sbjct 177 CCGCCTTGGCTTCTTTGTCAACCCCGCTAATATCCCTGGTTTCAACACTCTTGGGGTCGC 236 Query 331 CATCGCCCGTATTGACTTTGCCCCTGGTGGTCTAATCCCACCGCACATACATCCACGCGC 390 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 237 CATCGCCCGCATTGACTTTGCCCCTGGTGGTCAAATCCCACCGCACATACATCCACGCGC 296 Query 391 CTCCGAGATCATCTTAGTCATCAAGGGAAAGCTCCTAGTCGGTTTTGTATCGTCGAACGA 450 |||||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 297 CTCCGAGATCCTCCTAGTCATCAAGGGCAAGCTCCTAGTCGGTTTTGTGTCGTCGAACGA 356 Query 451 CTACAACTACACACTCTTCTCCAAAATTCTTTATCCCGGAGATGTGTTTGTTCATCCC-A 509 |||||||||||||| |||||||||||||||||||| |||||||| |||||| |||| | Sbjct 357 GTACAACTACACACTTTTCTCCAAAATTCTTTATCCGGGAGATGTATTTGTTT-TCCCCA 415 Query 510 TCGGATTGGTACAATTTCATGCAAACATAGGGAAGACAAATGCGGTTGCGATTGGGGCGG 569 |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 416 TCGGATTGGTACAATTTCATGCAAACATAGGGAAGAAAAATGCGATTGCGATTGGGGCGG 475 Query 570 TTGGGAGCCAAAATCCTGGTTAT-ATCTCGGTAGGTGATGCAGTTTTCGGGTCGAAGCCT 628 ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| Sbjct 476 TTGGGAGCCAAAATCCTGGTT-TCATCTCGGTAGGTGATGCAGTTTTCGGGTCGAGGCCT 534 Query 629 CCGATTGACCCAAAGATTTTGGCTAAAGCTTTTGCGTTGGACATCAATATAGTAAGATAT 688 ||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| |||||| Sbjct 535 TCGATTGATCCAAAGATTTTATCTAAAGCTTTTGCGTTGGATATCAACATAGTGAGATAT 594 Query 689 CTTCGAAAAGT---GTTTTCTCCTCAAGATGATATCGTT-AAT 727 ||||| | ||| ||||||||||||||||||||||||| ||| Sbjct 595 CTTCGGACAGTACTGTTTTCTCCTCAAGATGATATCGTTGAAT 637 > Ahg477679 jgi|Araly1|477679|fgenesh2_kg.3__380__AT3G04180.1 Length=730 Score = 442 bits (239), Expect = 2e-123 Identities = 555/700 (79%), Gaps = 51/700 (7%) Strand=Plus/Plus Query 37 GAAAAACAAAAAGATGAAATATCCTT-TTCAGTGTT-TTCTAGCTAAAATCATTTTGCTG 94 |||||| ||||| ||| || | ||| | || | || || ||||||||||||||||| || Sbjct 2 GAAAAAAAAAAAAATGGAAGGT-CTTCTGCACT-TTCTTTTAGCTAAAATCATTTTGGTG 59 Query 95 GCTTTAGCATCTTCGTTTGTCTCTTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 154 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 60 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 119 Query 155 GCCGTCCC-CGaaaaaaaCGGAGTTT-TCGTAAATGGAGAA-TTCTGCAAAGATCCAAAA 211 ||| || ||||| || ||||||| | ||||||||| || |||||||||||||||||| Sbjct 120 GCCA-CCAACGAAACTAATGGAGTTTAT-GTAAATGGA-AAGTTCTGCAAAGATCCAAAA 176 Query 212 C-TAGTAAC-ATCAGA-TGATTTCTTTGCTTCTGGCCTTAA-CATCCCGGGAAACACCAA 267 | ||||| | | || |||||||| | |||| ||| |||| | |||| |||||||||| Sbjct 177 TGT-GTAACGA-C-GAATGATTTCTATACTTCCGGC-TTAAACGTCCCCGGAAACACCAG 232 Query 268 CAAACG--CCTTGGCTCCT---T-----T-GTGAACCCCGCTAATA-TCCCCGGTCTCAA 315 || || || |||||| | | ||| | || || | | || |||||||| Sbjct 233 CAT-CGGTCCC-GGCTCCAAAATCACCGTCGTGGATGTCGA-AAGAATGCCTGGTCTCAA 289 Query 316 CACTCTTGGGGTCGGCATCGCCCG-TATTGACTTTGCCCCTGGTGGTCTA-ATCCCACCG 373 |||||||||||||| ||| ||||| ||| ||||| ||||| ||||||||| | |||||| Sbjct 290 CACTCTTGGGGTCGACATTGCCCGCTAT-GACTTCGCCCCGGGTGGTCTAGA-CCCACCT 347 Query 374 CACATACATCCACGCGCCT-CCGAGATCATCTTAGTCATCAAGGGAAAGCTCCTAGTCGG 432 |||| ||| || || | | || ||||| |||||||||| ||||| ||||| | || || Sbjct 348 CACACACACCCGCGTGGCAGCC-AGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGG 406 Query 433 TTTTGTATCGTCGAACGACTACAACTACACACTCTTCTCCAAAATTCTTTATCCCGGAGA 492 ||||| |||||||| || ||||||||||| |||||| ||||| |||||||||| ||||| Sbjct 407 ATTTGTGTCGTCGAATGAATACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGA 466 Query 493 TGTGTTTGT-TCATCCCATCGGATTGGTACAATTTCATGCAAACATAGGGAAGACAAATG 551 ||| ||||| | ||||| || ||| |||| |||||||| || | ||||||||||||| Sbjct 467 TGTATTTGTGTT-TCCCAAAGGTTTGATACATTTTCATGCGAATTTTGGGAAGACAAATG 525 Query 552 CGGTTGCGATTGGGGCGGTTGGGAGCCAAAATCCTGGTTAT-ATC-TCGGTAGGTGATGC 609 |||||| |||| |||| |||||||||| | || ||| | ||| | |||||||||| Sbjct 526 CGGTTGTGATTTCTGCGGCTGGGAGCCAAGAGCCCGGT-AGGATCATAA-TAGGTGATGC 583 Query 610 AGTTTTCGGGTCGAAGCCTCCGATTGA-CCCAAAGATTTTGGCTAAAGCTTTTGCGTTGG 668 |||||||| ||||| ||| |||||| ||||| | |||||||||||||||||||||||| Sbjct 584 GGTTTTCGGATCGAAACCTTTGATTGATCCCAAGG-TTTTGGCTAAAGCTTTTGCGTTGG 642 Query 669 ACATCAATATAGT-AAGATATCTTC-GAAAAGTGTTTTCT 706 || | || | ||| || |||||||| | | ||||||||| Sbjct 643 ACTTGAACAAAGTGAA-ATATCTTCAGGCA-GTGTTTTCT 680 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32480725284 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5