BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04180.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477679 jgi|Araly1|477679|fgenesh2_kg.3__380__AT3G04180.1 1090 0.0
Ahg918706 jgi|Araly1|918706|Al_scaffold_0492_1 455 2e-127
Ahg477677 jgi|Araly1|477677|fgenesh2_kg.3__378__AT3G04150.1 418 3e-116
> Ahg477679 jgi|Araly1|477679|fgenesh2_kg.3__380__AT3G04180.1
Length=730
Score = 1090 bits (590), Expect = 0.0
Identities = 686/731 (94%), Gaps = 12/731 (2%)
Strand=Plus/Plus
Query 94 AGAGaaaaaaaTTAATGGAAGGTCTTTTGCAGTTTCTATTAGCCAAAATCATTTTGTTGG 153
||| ||||||| ||||||||||||| |||| ||||| ||||| |||||||||||| |||
Sbjct 1 AGAAAAAAAAAAAAATGGAAGGTCTTCTGCACTTTCTTTTAGCTAAAATCATTTTGGTGG 60
Query 154 CTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTTG 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTTG 120
Query 214 CCACCAACGAAACTAATGGAGTTTATGTAAATGGAGAGTTCTGCAAAGATCCAAAACGTG 273
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 121 CCACCAACGAAACTAATGGAGTTTATGTAAATGGAAAGTTCTGCAAAGATCCAAAATGTG 180
Query 274 TAACAACCAATGATTTTTATACTTCCGGCCTAAACGTCCCCGGAAACACCATCATCGGGC 333
|||| || |||||||| |||||||||||| ||||||||||||||||||||| |||||| |
Sbjct 181 TAACGACGAATGATTTCTATACTTCCGGCTTAAACGTCCCCGGAAACACCAGCATCGGTC 240
Query 334 CCGGCGCTAGAAA-CACCGTCGTGGATGTCGAAAGACTGCCTGGTCTCAACACTCTTGGG 392
||||| | | ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 CCGGCTCCA-AAATCACCGTCGTGGATGTCGAAAGAATGCCTGGTCTCAACACTCTTGGG 299
Query 393 GTCGACATTGCCCGCTATGACTTTGCCCCGGGCGGTCTAGACCCACCTCACACACACCCG 452
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 300 GTCGACATTGCCCGCTATGACTTCGCCCCGGGTGGTCTAGACCCACCTCACACACACCCG 359
Query 453 CGTGGCAGCCAGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGGTTTTGTGTCGTCA 512
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 CGTGGCAGCCAGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGGATTTGTGTCGTCG 419
Query 513 AATGAATACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGATGTATTTGTGTTT 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AATGAATACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGATGTATTTGTGTTT 479
Query 573 CCCAAAGGTTTGATACATTTTCATGCGAATATTGGGGAGACAAATGCCGTTGTGATTTCT 632
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 480 CCCAAAGGTTTGATACATTTTCATGCGAATTTTGGGAAGACAAATGCGGTTGTGATTTCT 539
Query 633 GCGGGTGGGAGCCAAGACCCCGGTAGGATCATAATAGGTGATGCGGTTTTCGGATCAAAA 692
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 GCGGCTGGGAGCCAAGAGCCCGGTAGGATCATAATAGGTGATGCGGTTTTCGGATCGAAA 599
Query 693 CCTTTGATTGATCCCAAGGTTTTGGCTAAAGCTTTTGCGTTGGACTACAACAAAGTGAAA 752
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 CCTTTGATTGATCCCAAGGTTTTGGCTAAAGCTTTTGCGTTGGACTTGAACAAAGTGAAA 659
Query 753 TATCTTCAGGCAGTGTTTTCTTGA-TGACATAC-TAGCT-TA-AG---A-GA-A-TAATG 802
|||||||||||||||||||||||| |||||||| || | || || | || | |||||
Sbjct 660 TATCTTCAGGCAGTGTTTTCTTGAATGACATACGTAATTATATAGCCTACGAGAATAATG 719
Query 803 ATAAAATATAG 813
|||||||||||
Sbjct 720 ATAAAATATAG 730
> Ahg918706 jgi|Araly1|918706|Al_scaffold_0492_1
Length=639
Score = 455 bits (246), Expect = 2e-127
Identities = 509/630 (81%), Gaps = 41/630 (7%)
Strand=Plus/Plus
Query 153 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 60
Query 213 GCCACCAACGAAACTAATGGAGTTTAT-GTAAATGGA-GAGTTCTGCAAAGATCCAAAAC 270
||||||||||||||||| ||||||| | ||||||||| || |||||||||||||||||||
Sbjct 61 GCCACCAACGAAACTAAAGGAGTTT-TCGTAAATGGAAGA-TTCTGCAAAGATCCAAAAC 118
Query 271 GT-GTAACAACCAATGATTT-TTATACTTCCGGCCTAAACGTCCCCGGAAACACCATCAT 328
| |||||| |||||||||| || | |||| || || ||| |||| |||||||||| ||
Sbjct 119 -TAGTAACATCCAATGATTTCTT-TGCTTCTGGACTTAACATCCCGGGAAACACCAGCAA 176
Query 329 CGGGCCC-GGCG-CTA-GA-AACACCGTCGTGGATGTCGAAAGACTGCCTGGTCTCAACA 384
| | || ||| || | ||| ||| | | || || | | |||| ||||||
Sbjct 177 CCG-CCTTGGCTTCTTTGTCAACCCCG-C-TA-ATATC------C--C-TGGTTTCAACA 223
Query 385 CTCTTGGGGTCGACATTGCCCGCTAT-GACTTTGCCCCGGGCGGTCTAGA-CCCACCTCA 442
|||||||||||| ||| |||||| || ||||||||||| || |||| | | |||||| ||
Sbjct 224 CTCTTGGGGTCGCCATCGCCCGC-ATTGACTTTGCCCCTGGTGGTCAA-ATCCCACCGCA 281
Query 443 CACACACCCGCGTGGCAGCC-AGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGGTT 501
|| ||| || || | | || ||||| || ||||||| ||||||||||| | || ||||
Sbjct 282 CATACATCCACGCGCCT-CCGAGATCCTCCTAGTCATCAAGGGCAAGCTCCTAGTCGGTT 340
Query 502 TTGTGTCGTCAAATGAATACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGATG 561
|||||||||| || || ||||||||||| || ||| ||||| ||||||||||||||||||
Sbjct 341 TTGTGTCGTCGAACGAGTACAACTACACACTTTTCTCCAAAATTCTTTATCCGGGAGATG 400
Query 562 TATTTGTGTTTCCCAAA-GGTTTGATACATTTTCATGCGAATATTGGGGAGACAAATGCC 620
||||||| |||||| | || ||| |||| |||||||| || || ||| ||| ||||||
Sbjct 401 TATTTGT-TTTCCCCATCGGATTGGTACAATTTCATGCAAACATAGGGAAGAAAAATGC- 458
Query 621 G-TTGTGATTTCTGCGGGTGGGAGCCAAGACCCCGGTAGGATCATAA-TAGGTGATGCGG 678
| ||| |||| |||| |||||||||| | || ||| ||| | |||||||||| |
Sbjct 459 GATTGCGATTGGGGCGGTTGGGAGCCAAAATCCTGGTTTCATC-TCGGTAGGTGATGCAG 517
Query 679 TTTTCGGATCAAAACCTTTGATTGATCCCAAGGTTTTGGCTAAAGCTTTTGCGTTGGACT 738
||||||| || | |||| ||||||||| ||| |||| ||||||||||||||||||| |
Sbjct 518 TTTTCGGGTCGAGGCCTTCGATTGATCCAAAGATTTTATCTAAAGCTTTTGCGTTGGA-T 576
Query 739 A-CAACAAAGTGAAATATCTTCAGG-CAGT 766
| ||||| ||||| |||||||| || ||||
Sbjct 577 ATCAACATAGTGAGATATCTTC-GGACAGT 605
> Ahg477677 jgi|Araly1|477677|fgenesh2_kg.3__378__AT3G04150.1
Length=750
Score = 418 bits (226), Expect = 3e-116
Identities = 560/711 (79%), Gaps = 64/711 (9%)
Strand=Plus/Plus
Query 108 ATGGAAGGTCTT-TTGCAGTTTCTAT-TAGCCAAAATCATTTTGTTGGCTTTAGCATCTT 165
||| |||||||| || |||||||| | |||| |||||||| |||||||||||||||||||
Sbjct 37 ATGAAAGGTCTTGTT-CAGTTTCT-TGTAGCTAAAATCATCTTGTTGGCTTTAGCATCTT 94
Query 166 CGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTA--CTGTGTTGCCACCAACGA 223
| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct 95 CATTTGTATATTGTTACGATCCAAATCCTCTTCAAGACTATACTGTGTTGCCACCAACGA 154
Query 224 AACTAATGGAGTTTATGTA-------------------AATGGAGAGTTCTGCAAAGATC 264
|||||||||||||||||| |||||| |||| || |||||||
Sbjct 155 AACTAATGGAGTTTATGTTTGTGTTGGCTGTTTTCGTGAATGGAAAGTTTTGTAAAGATC 214
Query 265 CAAAACGT-GTAACAACCAATGATTTTTAT-ACTTCCGGCCTAAACGTCCCCGGAAACAC 322
|||||| | ||||| |||||||||||||| | ||| ||||||||| | |||||||||||
Sbjct 215 CAAAAC-TAGTAACTGCCAATGATTTTTATTA-TTCTGGCCTAAACATTCCCGGAAACAC 272
Query 323 CATCATCGGGCCC-GGCGC-TAGAAACACCG-TCGTGGATGTC-GAA-AGACTGCCTGGT 377
|| || | | || ||||| | || ||| | || |||||| | | | | ||||||
Sbjct 273 CAACAACCG-CCTTGGCGCATCGAT-CACTAAT-GTTGATGTCAGCTTA-A-TCCCTGGT 327
Query 378 CTCAACACTCTTGGGGTCGACATTGCCCGCT-ATGACTTT-GCCCCGGGCGGTCTAGACC 435
||||||||||||||||| | ||||||||||| | || ||| ||||| ||||||| | ||
Sbjct 328 CTCAACACTCTTGGGGTTGCCATTGCCCGCTTA-GA-TTTCGCCCCCGGCGGTC-A-ACT 383
Query 436 --CACCTCACACACACCCGCGTGGCAGCCAGATCTTCTTAGTCATGAAGGGCA-AGCTTT 492
|||| |||| |||||| |||| | ||||||| |||||||| | ||||| | |||| |
Sbjct 384 TTCACCGCACATACACCCACGTGCCTCCCAGATCATCTTAGTCCTCAAGGG-AGAGCTCT 442
Query 493 TC-GTTGGTTTTGTGTCGTCAAATGAATACAACTACACGCTCTTCACCAAAGTTCTTTAT 551
| || || |||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 443 -CAGTCGGATTTGTGTCGTCAAACGAATACAACTATACGCTCTTTTCCAAAGTTCTTTAT 501
Query 552 CCGGGAGATGTATTTGTGTTTCCCAAAGGTTTGATACATTTTCATGCGAATAT---TGGG 608
|| |||||||| || || ||||||| |||||| |||| |||||||| || | | |
Sbjct 502 CCCGGAGATGTGTTGGTTTTTCCCATCGGTTTGGTACAGTTTCATGCAAACAACAATAAG 561
Query 609 GAGACAAATGCCGTTGTGATTTCTGCGGGT--GGGAGCCAAGACCCCGGTAG-GATCATA 665
|||||||||| |||| |||| ||| | ||||| ||| |||||||| | |||| |
Sbjct 562 AAGACAAATGCGGTTGCGATTA--GCGCATACGGGAGTCAAAACCCCGGT-GTGATCCCA 618
Query 666 ATAGGTGATGCGGTTTTCGGATCAAAACCTTTGATTGATCCCAAGGTTTTGGCTAAAGCT 725
||||| | ||||||||||| ||||| || ||||||||||| ||| ||||||||||||||
Sbjct 619 GTAGGTAACGCGGTTTTCGGGTCAAACCCCTTGATTGATCCAAAGCTTTTGGCTAAAGCT 678
Query 726 TTTGCGTTGGAC-TACAACAAAGTGAAATATCTTCAG-GCAGTGTTTTCTT 774
|||||||||||| | |||| |||| | || | ||| | ||||||||||
Sbjct 679 TTTGCGTTGGACGTG-AACATAGTGCGACATGTCCAGAGG-GTGTTTTCTT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5