BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04181.1
Length=391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935365 jgi|Araly1|935365|scaffold_403353.1 154 5e-37
Ahg952001 jgi|Araly1|952001|scaffold_28800004.1 75.0 4e-13
> Ahg935365 jgi|Araly1|935365|scaffold_403353.1
Length=356
Score = 154 bits (83), Expect = 5e-37
Identities = 110/122 (90%), Gaps = 6/122 (5%)
Strand=Plus/Plus
Query 80 CTTCGTTCCCCATGTTAGAGTCTAATCAAAATCCTTCTTTGGTGCTCCTCGCTTTCACTG 139
|||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1 CTTC-TTCCTCATGTTAGAGTCTAATCAAAAACCTTCTTAGGTGCTCCTCGCTTTCACTG 59
Query 140 CCCCGATCTCTTCTTTCTCCGCCGGTGAAATTAAGGTTCTGAAAT----CATCCTCGATT 195
||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 60 CCCCGATCTCTTCCTTCCCCGCCGGTGAAATTT-GGTTCTGAAATAAATCATCCTCGATT 118
Query 196 GG 197
||
Sbjct 119 GG 120
> Ahg952001 jgi|Araly1|952001|scaffold_28800004.1
Length=202
Score = 75.0 bits (40), Expect = 4e-13
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 270 GTTTGTGGAGCATAAGCCAGATTCTGAGGACTTGACTGATACA 312
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct 156 GTTTGTGGAGCAGAAGCCAGATTCTGAGGACTTGACTGATACA 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14003101163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5