BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04230.1
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477683 jgi|Araly1|477683|fgenesh2_kg.3__384__AT3G04230.1 793 0.0
Ahg488708 jgi|Araly1|488708|fgenesh2_kg.6__1842__AT2G09990.1 481 3e-135
> Ahg477683 jgi|Araly1|477683|fgenesh2_kg.3__384__AT3G04230.1
Length=574
Score = 793 bits (429), Expect = 0.0
Identities = 531/579 (92%), Gaps = 11/579 (2%)
Strand=Plus/Plus
Query 31 AAAATCATAAAACCCTAGCAATGGCGACCCAACCGGCGAAAGAGTCTGTTCAATGTTTCG 90
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1 AAAATCATAAAACCCTAGCAATGGCGACCCAAGCGGCGAAAGAGTCTGTTCAATGCTTCG 60
Query 91 GAAGGAAGAAGACGGCAACAGCAGTCACCTACTGCAAACGGGGCTCGGGCATGATTAAGC 150
|||||||||||||||| || |||||| |||||||||| |||||||| ||||||||||
Sbjct 61 GAAGGAAGAAGACGGCCGTTGCCGTCACCCACTGCAAACGCGGCTCGGGTATGATTAAGC 120
Query 151 TCAACGGTTCGCCGATCGAGCTTTATCAGCCAGAGATCCTCCGATTCAAGATCTTCGAGC 210
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 121 TCAACGGTTCGCCGATCGAGCTTCATCAGCCAGAGATCCTCCGATTCAAGATCTTGGAGC 180
Query 211 CAGTCCTTCTCCTCGGGAAACACCGTTTCGCCGGAGTTGACATGAGGATCCGTG-CCACG 269
|| |||||||||||||||| |||||||||||||||||||||||||||||||| | | |
Sbjct 181 CAATCCTTCTCCTCGGGAAGCACCGTTTCGCCGGAGTTGACATGAGGATCCGAGTCGA-A 239
Query 270 GGCGGTGGTAACACATCTCGGGTCTACGCAATCCGTCAGAGTATCGCTAAGGCCCTCGTT 329
|| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 GGTGGTGGTAACACATCCCAGGTCTACGCAATCCGTCAGAGTATCGCTAAGGCTCTCGTT 299
Query 330 GCTTACTACCAGAAGTACGTTGATGAGCAGTCGAAGAAGGAGATCAAGGACATCTTGATG 389
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct 300 GCTTACTACCAGAAGTATGTGGATGAGCAGTCGAAGAAGGAGATCAAGGACATTTTGGTG 359
Query 390 AGGTACGATAGGACTCTTCTTGTTGCGGATCCGAGAAGGTGCGAGTCGAAGAAGTTTGGT 449
||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||
Sbjct 360 AGGTACGATAGGACTCTACTTGTTGCGGATCCTAGGAGGTGCGAATCGAAGAAGTTTGGT 419
Query 450 GGTCCTGGTGCTCGTGCTCGTTTCCAGAAGAGTTACCGTT-AGATTCTGGTTT-G-ATTT 506
||| ||||||||| |||||||||||||||||||||||| | | |||||||| | |||
Sbjct 420 GGTAAAGGTGCTCGTTCTCGTTTCCAGAAGAGTTACCGTTAAAAATCTGGTTTGGCTTTT 479
Query 507 TTTGTTTCTGTATCAACGTTTTGGGATTATGATGTTGAAATTGTGAGAC-TT-GGTTTCT 564
|||| || | |||||||||||||||||| |||||||||||||||||||| || || ||||
Sbjct 480 TTTG-TT-T-TATCAACGTTTTGGGATTGTGATGTTGAAATTGTGAGACTTTAGG-TTCT 535
Query 565 CTTTTGCGTTTTATTTTCAATGGTTATTGGATAATGTTT 603
|||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTTTTGCGTTTTATTTTCAATGGTTATTGGATAATGTTT 574
> Ahg488708 jgi|Araly1|488708|fgenesh2_kg.6__1842__AT2G09990.1
Length=652
Score = 481 bits (260), Expect = 3e-135
Identities = 401/468 (86%), Gaps = 13/468 (3%)
Strand=Plus/Plus
Query 40 AAACCCTAGCAATGGCGACCCAACCGGC-GAAAGAGTCTGTTCAATGTTTCGGAAGGAAG 98
|||||||| | |||||||| ||| | || | || ||||| ||||||||||||||||||
Sbjct 77 AAACCCTAACCATGGCGACTCAAGCAGCTG-CTGAATCTGTGCAATGTTTCGGAAGGAAG 135
Query 99 AAGACGGCAACAGCAGTCACCT-ACTGCAAACGGGGCTCGGGCATGATTAAGCTCAACGG 157
||||| ||| || |||| || ||||||| || || || || |||| |||||||||||
Sbjct 136 AAGACCGCAGTGGCCGTCA-CTCACTGCAAGCGTGGATCTGGTTTGATCAAGCTCAACGG 194
Query 158 TTCGCCGATCGAGCTTTAT-CAGCCAGAGATCCTCCGATTCAAGATCTTCGAGCCAGTCC 216
||| || |||||||||| | ||||| ||||||||||||||||||||||||||||| || |
Sbjct 195 TTCCCCAATCGAGCTTT-TCCAGCCTGAGATCCTCCGATTCAAGATCTTCGAGCCGGTTC 253
Query 217 TTCTCCTCGGGAAA-CACCGTTTCGCCGGAGTTGACATGAGGATCCGTG-CCACGGGCGG 274
|||||||| ||||| ||||||||||| || || ||||||||||| |||| | || || ||
Sbjct 254 TTCTCCTC-GGAAAGCACCGTTTCGCAGGTGTGGACATGAGGATTCGTGTCAAC-GGTGG 311
Query 275 TGGTAACACATCTCGGGTCTACGCAATCCGTCAGAGTATCGCTAAGGCCCTCGTTGC-TT 333
|||| |||| |||| ||| ||||| ||||||||||||||||| ||||| || ||||| ||
Sbjct 312 TGGTCACACTTCTCAGGTTTACGCTATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTT 371
Query 334 ACTACCAGAAGTACGTTGATGAGCAGTCGAAGAAGGAGATCAAGGACATCTTGATGAGGT 393
|||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 372 -CTACCAGAAGTATGTGGATGAGCAATCGAAGAAGGAGATTAAGGATGTCTTGGTGAGGT 430
Query 394 ACGATAGGACTCTTCTTGTTGCGGATCCGAGAAGGTGCGAGTCGAAGAAGTTTGGTGGTC 453
| ||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 431 ATGATAGGACTCTGCTTGTGGCGGATCCGAGAAGGTGTGAGCCGAAGAAGTTTGGTGGTC 490
Query 454 CTGGTGCTCGTGCTCGTTTCCAGAAGAGTTACCGTTAGATTCTGGTTT 501
||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 491 CTGGTGCTCGTGCTCGTTTCCAGAAGAGTTACCGTTA-ATTTTGTTTT 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24589281465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5