BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04250.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477685 jgi|Araly1|477685|fgenesh2_kg.3__386__AT3G04250.1 758 0.0
Ahg887737 jgi|Araly1|887737|Al_scaffold_0685_1 747 0.0
Ahg930411 jgi|Araly1|930411|scaffold_302868.1 289 3e-77
Ahg340580 jgi|Araly1|340580|fgenesh1_pg.C_scaffold_3000343 274 8e-73
Ahg905435 jgi|Araly1|905435|Al_scaffold_0003_2563 250 1e-65
Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935 207 8e-53
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 206 3e-52
Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 187 1e-46
Ahg925743 jgi|Araly1|925743|scaffold_201304.1 134 1e-30
Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1 122 3e-27
Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 73.1 3e-12
Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 73.1 3e-12
Ahg342633 jgi|Araly1|342633|fgenesh1_pg.C_scaffold_3002396 73.1 3e-12
Ahg929886 jgi|Araly1|929886|scaffold_302343.1 63.9 2e-09
Ahg929147 jgi|Araly1|929147|scaffold_301604.1 60.2 2e-08
Ahg929032 jgi|Araly1|929032|scaffold_301489.1 58.4 9e-08
> Ahg477685 jgi|Araly1|477685|fgenesh2_kg.3__386__AT3G04250.1
Length=852
Score = 758 bits (410), Expect = 0.0
Identities = 563/635 (89%), Gaps = 18/635 (3%)
Strand=Plus/Plus
Query 263 ACAAAATCGACGATCACATAATCTGTTTTGATTTCACAAGTGAGAGATTTGGGCCACTTT 322
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 218 ACAAACTCGACGATCACATAATCTGTTTTGATTTCACAAGTGAGAGAGTTGGGCCGCTTC 277
Query 323 TGCGTCTACCGTTTAGCGCTGGCCATGATGACTATGTGACTTTATCTTGTGTTAGAGAAG 382
|||||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 278 TGCGTCTACCGTTTTGCGCTGGGCTTCATGACTATGTGACTTTATCTTGTGTTAGAGAAG 337
Query 383 AGAAGCTTGCGGCTTTACTTACGCACAACGACTGGAATCCATATGAGTTTGAGATATGGA 442
|||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 338 AGAAGCTTGCGGCTTTACTTACCCACAACGAATCAAATCCATATGAGTTTGAGATATGGA 397
Query 443 TCACGACTAAGATCGAGTATGATAAAGTGTCGTGGAGCAAGATCTTGGAAATGGATACAG 502
| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 398 TTACGACTAAGATTGAGTATGAAAAAGTGTCATGGAGCAAGATTTTGGAAATGGATACAG 457
Query 503 GACCATTGGCTGACATGCCGATTGCATATATACATGGGAGTTTCTTCATTGACGAGGAGA 562
||||||||||||||| ||||||||||| || ||||| ||||||||| ||||||||||||
Sbjct 458 GACCATTGGCTGACAGGCCGATTGCATTTACACATGAGAGTTTCTTTGTTGACGAGGAGA 517
Query 563 AGAAAGTCTCCATGGTTTTTGAT--C---A--C-C-ACAGAGTCAACATCATTGGAAAAA 613
|||| |||||||||| ||||||| | | | | ||| ||| |||||||||||| |
Sbjct 518 AGAATGTCTCCATGGGTTTTGATGACTTGAATCGCCACACAGTTAACATCATTGGAGAGG 577
Query 614 CTGGATATTTTAGAGAATTGGATCTCCGAGTACATGTAGCCGGCATAAAGTGT-----A- 667
| ||||| |||| ||||||||||||| |||||| |||||||| |||||| ||| |
Sbjct 578 CCGGATACTTTATAGAATTGGATCTCGGAGTACCTGTAGCCGACATAAACTGTGGGGCAC 637
Query 668 G--G-CCACATTTGTGCCCTTACGTTCCAAATTCAATGCAAATCAAACAACCTCCGGGAG 724
| | ||||||||||||||||| ||||||| |||| ||||||||||||||||||| ||||
Sbjct 638 GAAGGCCACATTTGTGCCCTTATGTTCCAAGTTCAGTGCAAATCAAACAACCTCCCGGAG 697
Query 725 GCAAAAGGAAACGAAAACCCATTCTAGAACAGCGTCGATATGACCAAAACATGTTGAGAG 784
||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||
Sbjct 698 GCAAAAGGAAACGAAAAACCATTCTAGAAAAGCGTCAATATGATCAAAACATGTTGAGAC 757
Query 785 TTGCCGCCTTTATAAAGCGAACCAAGCAGGAGGATAATAAATGGAAAAAACGAGTCCTCG 844
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 758 TTGCCGCCTTTATAAAGCGAACCAAGCAGGAGGAAAATAAATGGAGAAAACGAGTCCGCG 817
Query 845 AGGGTCTGAAGAAGCAAACGAATTTTAAAGCCTAA 879
|||||| |||||| |||||| |||| ||||||||
Sbjct 818 TGGGTCTAAAGAAGAAAACGATTTTTGAAGCCTAA 852
Score = 296 bits (160), Expect = 2e-79
Identities = 190/204 (93%), Gaps = 3/204 (1%)
Strand=Plus/Plus
Query 4 TACAGGTACGCTCTAGGGTACGTGAACAAGAACAACTCTTGTCGTAGCCACAAAGTCTTG 63
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TACAGGTACGCTCTAGGATACGTGAACAAGAACAACTCTTGTCGAAGCCACAAAGTCTTG 60
Query 64 AGGTTTATAGATCATTACATCTCTTCGGCCGTGAACCACGCACCCGAAAACCGGTTTTCA 123
||| |||||||| ||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 61 AGGCTTATAGATGATTACATCTATTTGGCCGTGAACCATGCACCCGAAAACCGGTTTTCA 120
Query 124 TGGTATGAAATCTACGATATTGAAACCGATTTATGGACAACTCTTGATGTCCCTCC-ATA 182
||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||
Sbjct 121 TGGTATGAAATCTACGATATTGAAACCTATTTATGGACAACTCTTGACGTCCCCCCCATA 180
Query 183 TTGGAT-AGTATCGTGTTATCAGC 205
||||| | |||||||||||||||
Sbjct 181 TTGGAGGA-TATCGTGTTATCAGC 203
> Ahg887737 jgi|Araly1|887737|Al_scaffold_0685_1
Length=858
Score = 747 bits (404), Expect = 0.0
Identities = 562/636 (88%), Gaps = 20/636 (3%)
Strand=Plus/Plus
Query 263 ACAAAATCGACGATCACATAATCTGTTTTGATTTCACAAGTGAGAGATTTGGGCCACTTT 322
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 224 ACAAACTCGACGATCACATAATCTGTTTTGATTTCACAAGTGAGAGAGTTGGGCCGCTTC 283
Query 323 TGCGTCTACCGTTTAGCGCTGGCCATGATGACTATGTGACTTTATCTTGTGTTAGAGAAG 382
|||||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 284 TGCGTCTACCGTTTTGCGCTGGGCTTCATGACTATGTGACTTTATCTTGTGTTAGAGAAG 343
Query 383 AGAAGCTTGCGGCTTTACTTACGCACAACGACTGGAATCCATATGAGTTTGAGATATGGA 442
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 344 AGAAGCTTGCGGCTTTACTTACCCACAACGAATCCCATCCATATGAGTTTGAGATATGGA 403
Query 443 TCACGACTAAGATCGAGTATGATAAAGTGTCGTGGAGCAAGATCTTGGAAATGGATACAG 502
| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 404 TTACGACTAAGATTGAGTATGAAAAAGTGTCATGGAGCAAGATTTTGGAAATGGATACAG 463
Query 503 GACCATTGGCTGACATGCCGATTGCATATATACATGGGAGTTTCTTCATTGACGAGGAGA 562
||||||||||||||| ||||||||||| || ||||| ||||||||| ||||||||||||
Sbjct 464 GACCATTGGCTGACAGGCCGATTGCATTTACACATGAGAGTTTCTTTGTTGACGAGGAGA 523
Query 563 AGAAAGTCTCCATGGTTTTTGAT--C---A--C-C-ACAGAGTCAACATCATTGGAAAAA 613
|||| |||||||||| ||||||| | | | | ||| || | ||||||||||| |
Sbjct 524 AGAATGTCTCCATGGGTTTTGATGACTTGAATCGCCACACAGCCCACATCATTGGAGAGG 583
Query 614 CTGGATATTTTAGAGAATTGGATCTCCGAGTACATGTAGCCGGCATAAAGTGT-----A- 667
| ||||| |||| ||||||||||||| |||||| |||||||| |||||| ||| |
Sbjct 584 CCGGATACTTTATAGAATTGGATCTCGGAGTACCTGTAGCCGACATAAACTGTGGGGCAC 643
Query 668 G--G-CCACATTTGTGCCCTTACGTTCCAA-ATTCAATGCAAATCAAACAACCTCCGGGA 723
| | ||||||||||||||||| ||||||| || || ||||||||||||||||||| |||
Sbjct 644 GAAGGCCACATTTGTGCCCTTATGTTCCAAGAT-CAGTGCAAATCAAACAACCTCCCGGA 702
Query 724 GGCAAAAGGAAACGAAAACCCATTCTAGAACAGCGTCGATATGACCAAAACATGTTGAGA 783
|||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||
Sbjct 703 GGCAAAAGGAAACGAAAAACCATTCTAGAAAAGCGTCAATATGATCAAAACATGTTGAGA 762
Query 784 GTTGCCGCCTTTATAAAGCGAACCAAGCAGGAGGATAATAAATGGAAAAAACGAGTCCTC 843
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 763 CTTGCCGCCTTTATAAAGCGAACCAAGCAGGAGGAAAATAAATGGAGAAAACGAGTCCGC 822
Query 844 GAGGGTCTGAAGAAGCAAACGAATTTTAAAGCCTAA 879
| ||||||||||||| |||||| |||| ||||||||
Sbjct 823 GTGGGTCTGAAGAAGAAAACGATTTTTGAAGCCTAA 858
Score = 296 bits (160), Expect = 2e-79
Identities = 190/204 (93%), Gaps = 3/204 (1%)
Strand=Plus/Plus
Query 4 TACAGGTACGCTCTAGGGTACGTGAACAAGAACAACTCTTGTCGTAGCCACAAAGTCTTG 63
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 7 TACAGGTACGCTCTAGGATACGTGAACAAGAACAACTCTTGTCGAAGCCACAAAGTCTTG 66
Query 64 AGGTTTATAGATCATTACATCTCTTCGGCCGTGAACCACGCACCCGAAAACCGGTTTTCA 123
||| |||||||| ||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 67 AGGCTTATAGATGATTACATCTATTTGGCCGTGAACCATGCACCCGAAAACCGGTTTTCA 126
Query 124 TGGTATGAAATCTACGATATTGAAACCGATTTATGGACAACTCTTGATGTCCCTCC-ATA 182
||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||
Sbjct 127 TGGTATGAAATCTACGATATTGAAACCTATTTATGGACAACTCTTGACGTCCCCCCCATA 186
Query 183 TTGGAT-AGTATCGTGTTATCAGC 205
||||| | |||||||||||||||
Sbjct 187 TTGGAGGA-TATCGTGTTATCAGC 209
> Ahg930411 jgi|Araly1|930411|scaffold_302868.1
Length=1141
Score = 289 bits (156), Expect = 3e-77
Identities = 541/719 (75%), Gaps = 57/719 (8%)
Strand=Plus/Plus
Query 105 ACCCGAAAACCGGTT-TTCATGGTATGAAATCTACGATATTGAAACCGATTTATGGACAA 163
||||||||| | ||| || |||||||||||||| ||| |||| | ||||||||||| |
Sbjct 401 ACCCGAAAAGCAGTTCTT-TTGGTATGAAATCTATGATTTTGACTCTGATTTATGGACGA 459
Query 164 CTCTTGATGTCCCTCCATATTGG-ATAGTATCGTGTTATCAGCGTGGTGTTTCTCTCAAG 222
|||||||| | ||||| ||||| || || | | || | | ||||| |||||||| |||
Sbjct 460 CTCTTGATATATCTCCACATTGGCGTA-TAGCATTTTGTAACCGTGGCGTTTCTCTTAAG 518
Query 223 GGAAATACCTACTTTTGTGCTACAAAAAGTAACGCA-A--TAAACA-AAATC---GACGA 275
||||| || |||||||||||| | |||| |||| | | |||| | || || | | |
Sbjct 519 GGAAACACTTACTTTTGTGCTGCTGAAAGGAACGTAGATGTAAA-AGAAGTCTTGGCCAA 577
Query 276 TCA-CATAATCTGTTTTGATTTCACAAGTGAGAGATTTGGGCCACTTTTGCGTCTACCGT 334
| | | |||||||||| ||||| ||||||||||||||||| || ||| ||| ||| ||||
Sbjct 578 T-AGCTTAATCTGTTTCGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGT 636
Query 335 TTAGCGCTGGCCATGATGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGG 394
|||| | ||| || |||||||| ||| || |||||||||||||||||||||||||| |
Sbjct 637 TTAGTGGTGGGTATCATGACTATACGACATTGTCTTGTGTTAGAGAAGAGAAGCTTGC-G 695
Query 395 C-TTTACTTAC-GCACAACGACTGGAATCCATATGAGTTTGAGATATGGATCACGACTAA 452
| ||||||| | |||| | || | |||||||||||| |||| ||||||| ||||||||
Sbjct 696 CTTTTACTT-CAGCACGATGAATCAAATCCATATGAGCTTGACTTATGGATTACGACTAA 754
Query 453 GATCGAGTA-TGATA-AAGTGTCGTGGAGCAAGATCTTGGA-AATGG-ATACAGGACCAT 508
||| ||| | ||| | | |||| |||||||||| || | || | ||| | |||| ||
Sbjct 755 GATTGAG-ACTGA-AGAGGTGTTGTGGAGCAAGTTCGT-GAGAGTGGCA-ACAGCTGGAT 810
Query 509 TGGCTGACA-TGCCGATTGCATATATACATGGGAGTTTCTTCATTGACGAGGAGAAGAAA 567
| ||| | | | || ||| |||| ||| |||||||||||||||||||||||||||
Sbjct 811 T---TGATAGTTATG-TTCCATTTATAGGTGGAAGTTTCTTCATTGACGAGGAGAAGAAA 866
Query 568 GTCTCCAT-GGTTTT--TGATC---A----C-C-ACAGAGTCAACATCATTGGAAAAACT 615
||| |||| |||||| |||| | | | ||| | | |||||||||||| | ||
Sbjct 867 GTCGCCATTGGTTTTGATGATGGGGATAATCGCCACACAATTAACATCATTGGAGAGGCT 926
Query 616 GGATATTTTAGAGAATTGGATCTCCGA-GTACATGTAGCCGGC-ATA-AAGTGT-AGGCC 671
||||| || || | |||||||||| | | | || | | | | | | || ||| || |
Sbjct 927 GGATACTTCAGGGCATTGGATCTC-GTTGGAGATTTTGGAGACCA-AGAA-TGTCAGAC- 982
Query 672 ACATTTGTGCCCTTACGTTCCAAATTCAATGCAAATCAAACAACCTCCGGGAGGCA-AAA 730
| || ||||| |||| ||||||| || | || ||||||| |||||| ||||| | |||
Sbjct 983 AGATCTGTGCTCTTATGTTCCAAGTTTAGTGGAAATCAAGCAACCTGAAGGAGG-AGAAA 1041
Query 731 GGAAACGA-AAACCCA-TTCTAGAACAGCGTCGATATGACCAAAACATGTTGAGAGTTG 787
|| ||| | ||| | | || |||| || ||||||||| ||||||||| |||| |||
Sbjct 1042 GGGAACAAGAAAGCGAATTGGAGAA--GCTTCGATATGATGAAAACATGTCGAGACTTG 1098
> Ahg340580 jgi|Araly1|340580|fgenesh1_pg.C_scaffold_3000343
Length=870
Score = 274 bits (148), Expect = 8e-73
Identities = 381/485 (79%), Gaps = 49/485 (10%)
Strand=Plus/Plus
Query 118 TTTTCATGGTATGAAATCTACGATATTGAAACCGATTTATGGACAACTCTTGATGTCCCT 177
|||| ||| ||||||||||||||| |||| | | ||| ||||| |||||||||||| ||
Sbjct 296 TTTT-ATGTTATGAAATCTACGATTTTGACTCTGTTTTGTGGACGACTCTTGATGTCACT 354
Query 178 CCATATT---GGATAGTATCGTGTT-ATCAGCGT-G-GTGTTTCTCTCAAGGGAAATACC 231
||| ||| |||||||| ||| || | | ||| | || |||| || ||||||| ||
Sbjct 355 CCACATTGGCGGATAGTACCGT-TTGGTAACCGTAGCGT-TTTC-CTTGAGGGAAACACT 411
Query 232 TACTTTTGTGCTACAAAAAGTAACGC--AA-T--A--AACAAAATCG--AC---GATCAC 279
|||| ||||||| || |||| ||| | || | | ||| || | || ||||||
Sbjct 412 TACTATTGTGCTTCAGAAAGGAACTCAGAAGTGGACGGACACCATGGACACAAAGATCAC 471
Query 280 ATAATCTGTTTTGATT-TCACAAGTGAGAGATTTGGGCCACTTTTGCGTCTACCGTTTAG 338
|||||||||||||||| | |||| ||||||||||| || ||| | | ||| ||||||||
Sbjct 472 ATAATCTGTTTTGATTAT-ACAAAAGAGAGATTTGGACCGCTTCTACCTCTGCCGTTTAG 530
Query 339 CGCTGGCCATGATGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCTTT 398
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CGCCGGGTATGATGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCTTT 590
Query 399 ACTTACGCACAACGACTGGAA-TCCATATGAGTTTGAGATATGGATCACGACTAAGATCG 457
||||||||| ||||| | || || |||||||||||| |||||||||||||||||||| |
Sbjct 591 ACTTACGCATAACGAA-GTAAATCTATATGAGTTTGACATATGGATCACGACTAAGATTG 649
Query 458 A-GTATGATAAAG-TGTCGTGGAGCAAGATCTTGGAAA-TGGATACAGGA-CCATTGGCT 513
| | || |||| | ||||||| |||| ||||| | | ||||| | | | ||| |
Sbjct 650 ATGCC-GA-AAAGATATCGTGGAACAAGTTCTTG-ACAGTGGATTC-GCAACCA--G--- 700
Query 514 GACATGCCGATTGCATATATACATGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTC-TC 572
|||| |||| |||||| |||| ||||||||||||| ||||||||||||||| ||
Sbjct 701 -ACATTCCGA----ATATATG--TGGG-GTTTCTTCATTGATGAGGAGAAGAAAGTCATC 752
Query 573 CATGG 577
||||
Sbjct 753 -ATGG 756
> Ahg905435 jgi|Araly1|905435|Al_scaffold_0003_2563
Length=993
Score = 250 bits (135), Expect = 1e-65
Identities = 292/367 (80%), Gaps = 14/367 (4%)
Strand=Plus/Plus
Query 103 GCACCCGAAAACCGGTT-TTCATGGTATGAAATCTACGATATTGAAACCGATTTATGGAC 161
||||||||||| | ||| || |||||||||||||||||| |||| | |||||||||||
Sbjct 373 GCACCCGAAAAGCAGTTCTT-TTGGTATGAAATCTACGATTTTGACTCTGATTTATGGAC 431
Query 162 AACTCTTGATGTCCCTCCATATTGG-ATAGTATCGTGTTATCAGCGTGGTGTTTCTCTCA 220
|||||||||||| ||||| ||||| || || | | || | | | ||| || ||||| |
Sbjct 432 GACTCTTGATGTCACTCCACATTGGCGTA-TAGCATTTTGTAACCCTGGCGTGTCTCTTA 490
Query 221 AGGGAAATACCTACTTTTGTGCTACAAAAAGTAACGCA-A--TAAACAAAATC---GACG 274
||||||| || |||||||||||| | |||| |||| | | || | || || | |
Sbjct 491 AGGGAAACACTTACTTTTGTGCTGCTGAAAGGAACGTAGATGTAGATGAAGTCTTGGCCA 550
Query 275 ATCA-CATAATCTGTTTTGATTTCACAAGTGAGAGATTTGGGCCACTTTTGCGTCTACCG 333
|| | | |||||||||| ||||| ||||||||||||||||| || ||| ||| ||| |||
Sbjct 551 AT-AGCTTAATCTGTTTCGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCG 609
Query 334 TTTAGCGCTGGCCATGATGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCG 393
||||| | ||| ||| |||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 610 TTTAGTGGTGGGCATCATGATTATATGACTTTGTCTTGTGTTAGAGAAGAGAAGCTTGCG 669
Query 394 GCTTTACTT-ACGCACAACGACTGGAATCCATATGAGTTTGAGATATGGATCACGACTAA 452
| ||||||| | |||| | || | |||||||||||| |||| | ||||| ||||||||
Sbjct 670 GTTTTACTTCA-GCACGATGAATCAAATCCATATGAGCTTGACTTGTGGATTACGACTAA 728
Query 453 GATCGAG 459
||| |||
Sbjct 729 GATTGAG 735
> Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935
Length=903
Score = 207 bits (112), Expect = 8e-53
Identities = 302/389 (78%), Gaps = 32/389 (8%)
Strand=Plus/Plus
Query 123 ATGGTATGAAATCTACGATATT-GAAACCGATTTATGGACAACTCTTGATGTCCCTCCAT 181
||||||||||||||||||| || || | | ||||||| | |||||||||||| |||||
Sbjct 441 ATGGTATGAAATCTACGAT-TTCGAGTCTGGTTTATGGGCGACTCTTGATGTCACTCCAC 499
Query 182 ATTGG-ATAGTATCGTGTT-ATCAG-CGTGGTGTTTCTCTCAAGGGAAATACCTACTT-T 237
| ||| || ||||| || | || | ||| ||||||| |||||||| || || ||
Sbjct 500 ACTGGTGTA-TATCG-CTTGGT-AGCCATGGAATTTCTCTTAAGGGAAACACTTA-TTGG 555
Query 238 TGTGCTACAAAAAG-TA---ACG-CA---ATAAACAAAATC-GA-C--GATCACATAATC 285
|||||| ||||| | ||| || || || | ||| || | || |||||||||
Sbjct 556 AGTGCTATTAAAAGAAACGCACGCCACGGATTGACCATATCTGATCATGACCACATAATC 615
Query 286 TGTTTTGATTTCACAAGTGAGAGATTTGGGCCACTTTTGCGTCTACCGTTTAGCGCTG-G 344
||||||||||| ||||| ||||||||||| || ||| ||| ||||||||| |||| || |
Sbjct 616 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCTACCGTTAAGCGTTGAG 675
Query 345 CCATGATGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCTTTACTTAC 404
|| ||| ||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 676 T-ATTATGGTTATGTGACTTTGTTTTGTGTTAGAGAAGAGAAGCTTGCGGCTTTACA-AC 733
Query 405 GCA-CAAC-GACTGGAATCCATATGAGTTTGAGATATGGATCACGACTAAGATCGAGTAT 462
| |||| | |||||||||||| ||||| | |||||||| || ||||| || ||| ||
Sbjct 734 AAAACAACCGT-TGGAATCCATATAAGTTTAATATATGGATTACAACTAATATTGAGCAT 792
Query 463 GATAAAG-TGTCGTGGAGCAAGAT-CTTG 489
|| | || ||||||||||||| || ||||
Sbjct 793 GA-ACAGGTGTCGTGGAGCAA-ATTCTTG 819
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 206 bits (111), Expect = 3e-52
Identities = 371/490 (76%), Gaps = 43/490 (9%)
Strand=Plus/Plus
Query 106 CCCGA-AAACCGGTTTTCATGGTATGAAATCTACGATATTGAAACCGATTTATGGACAAC 164
||||| || || | ||| | ||||||||||||||||| |||| | ||||||||||| ||
Sbjct 958 CCCGAGAATCCCGCTTT-ACGGTATGAAATCTACGATTTTGATTCTGATTTATGGACCAC 1016
Query 165 TCTTGATGTCCCTCCATATTGGATAGTATCGTGTTATCAGCGTGGTGTTTCTCTCAAGGG 224
|||||||||| ||||| | ||| |||| || | ||||||||| |||||||||||||
Sbjct 1017 TCTTGATGTCTCTCCACACTGG--CGTATAATG-TCTCAGCGTGGCCTTTCTCTCAAGGG 1073
Query 225 AAATACCTACTTTTGTGCTACAAAAAGTAACGCAATAAACA-AAATCGACGATCACATAA 283
||| || |||| ||||| | || | || | |||| || || | | ||| ||||
Sbjct 1074 AAACACTTACTGGGGTGCTGTAGAACGGAATG-AATACGCACCTAT-TA-G-TCATATAA 1129
Query 284 TCTGTTTTGATTTCACAAGTGAGAGATTTGGGCCACTTTTGCGTCTACCGTTTAGCGC-T 342
||||||||||||| ||||| ||||||||||| || ||||||| ||| || ||||| || |
Sbjct 1130 TCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTCTGCCATTTAGTGCTT 1189
Query 343 GGCCATG-ATGACTATGTGACTTTATCTT-GTGTTAGAGAAGAGAAGCTTGCGGCTTTAC 400
|| || | || | || | | |||||| | ||||||||||||||| | || ||||||
Sbjct 1190 GG-GGTGCA-GAGTTTGCGTCACTATCTTCG-GTTAGAGAAGAGAAGATCGCTGCTTTA- 1245
Query 401 TTAC-GCACAACGACTGGAATCCATATGAGTTTGAGATATGGATCACGACTAAGATCGAG 459
|| | | |||| | | ||| ||| | |||||||||||||||| || |||||||| |||
Sbjct 1246 TTTCAG-ACAA-G-C--GAA-ACATTTAAGTTTGAGATATGGATTACAACTAAGATTGAG 1299
Query 460 TATGATAAA-GTGTCGTGGAGCAAGA-TCTTGGA-AATGGATACAGGACCATTGGC-TGA 515
||| ||| |||||||||||| ||| |||| | ||||||||| | || | | |||
Sbjct 1300 GCTGA-AAATGTGTCGTGGAGC-AGATTCTT-CACAATGGATAC---ATCA-TACCTTGA 1352
Query 516 CATGCCGATTGCATATATACATGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCTCCA- 574
|| | | || | | | || |||||||||||||||||||||||||||||| | |
Sbjct 1353 CA-G--TA-AGC-TCT-CATATAAGAGTTTCTTCATTGACGAGGAGAAGAAAGT-TGCTG 1405
Query 575 TGGTTTTTGA 584
||||||||||
Sbjct 1406 TGGTTTTTGA 1415
> Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077
Length=1167
Score = 187 bits (101), Expect = 1e-46
Identities = 407/545 (75%), Gaps = 60/545 (11%)
Strand=Plus/Plus
Query 124 TGGTATGAAATCTACGATATTGAAAC-C-GATTTATGGACAACTCTTGATGTCCCTCCAT 181
|||||||||||||| ||| || ||| | |||||||||||||||||||||||| ||||||
Sbjct 544 TGGTATGAAATCTATGAT-TT-TAACTCTGATTTATGGACAACTCTTGATGTCACTCCAT 601
Query 182 ATTGGATAGTATCG-T-GTTATCAGCGTGGTGTTTCTCTCAAGGGAAATACCTACTTTTG 239
| ||| | ||| | | || ||| |||||||||| |||| |||||| || |||| ||
Sbjct 602 ACTGG-T-TTATAGCTATTTCTCAAAGTGGTGTTTCCCTCATGGGAAACACATACTGGTG 659
Query 240 TGCTACAAAAAGTAAC-GCAATAAACAAAATCGACGATCACATAATCTGTTTTGATTTCA 298
||||| | ||| | | || | || | ||||||||| || ||||||||||| |
Sbjct 660 TGCTAGGATAAGGAGCGGCGGT------TATAG-CGATCACATTATTTGTTTTGATTTTA 712
Query 299 CAAGTGAGAGATTTGGGCCACTTTTGCGTCTACCGTTTAGCGCT-GGCCATGA-TGACTA 356
|||| ||||||||||| || ||||||| | | || ||||||| | || || | | | |
Sbjct 713 CAAGAGAGAGATTTGGACCGCTTTTGCCTTTGCCATTTAGCGTTAGG-GATCATTCA-TG 770
Query 357 TGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCTTTACTTACGCACAACGACTG 416
||||| |||||||||||||||||||||||||||||| | |||| || | ||| | | ||
Sbjct 771 TGTGATTTTATCTTGTGTTAGAGAAGAGAAGCTTGCAGTTTTATTT-CA-ACACCAAATG 828
Query 417 GA--ATCCATATGA-GTTTGAGATATGGATCACGACTAAGATCGAGTAT-GATAAAG-TG 471
| || |||||| ||| || |||||||| ||| |||| | ||| | || || | ||
Sbjct 829 TATTATAAATATGAAGTT-GAAATATGGATTACGGTTAAGCTTGAG-ACCGA-AATGGTG 885
Query 472 TCGTGGAGCAAGATCTTG-GAAATGGATACAGGACCATTGGCTGACATGCCGATTGCATA 530
|||||||||||| ||||| ||| | |||| || ||| || ||| |||
Sbjct 886 TCGTGGAGCAAGTTCTTGAGAA-TAAATAC-GG------GGC---CA-----ATT--ATA 927
Query 531 TATACATGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCTCCAT-GGTTTT--TGATCA 587
| ||| |||||||||||||||||||| ||||||||| |||| || ||| ||| ||
Sbjct 928 CACACA----AGTTTCTTCATTGACGAGGAAAAGAAAGTCGCCATTGGGTTTAATGA-CA 982
Query 588 --C-CACAGAGTCAACATCATTGGAAAAACTGGATATTTTAGAGAATTGGATCTCCGAGT 644
| || | | | |||||||||||| | ||||||| ||||||||||||||||| |||
Sbjct 983 ATCGCAAACAATTAACATCATTGGAGAGGCTGGATACTTTAGAGAATTGGATCTTGGAGA 1042
Query 645 ACATG 649
|||||
Sbjct 1043 ACATG 1047
> Ahg925743 jgi|Araly1|925743|scaffold_201304.1
Length=1229
Score = 134 bits (72), Expect = 1e-30
Identities = 343/468 (73%), Gaps = 41/468 (9%)
Strand=Plus/Plus
Query 127 TATGAAATCTACGATATTGAAACCGATTTATGGACAACTCTTGATGTCCCTCCATATTGG 186
||||||||||| ||| |||| | ||||||||||| |||||||||||| ||||| | |||
Sbjct 583 TATGAAATCTATGATTTTGATTCTGATTTATGGACTACTCTTGATGTCTCTCCACAATGG 642
Query 187 ATAGTATCGTGTTATCAGCGTGGTGTTTCTCTCAAGGGAAATACCTACTTTTGTGCTACA 246
| |||| | | ||| || || |||||||||||||||| || |||| |||||| |
Sbjct 643 -T-GTAT-AAGGTCTCAACGAGGCCTTTCTCTCAAGGGAAACACTTACTGGGGTGCTA-A 698
Query 247 A-AAAGTAACGCAATAAACAAAATCGA-CGATCACATAATCTGTTTTGATTTCACAAGTG 304
| || | ||| | || | | | ||||| ||||| ||||||||||| ||||| |
Sbjct 699 AGAACG--GCGC-GCACAC-GGACCCATTGATCATATAATTTGTTTTGATTTTACAAGAG 754
Query 305 AGAGATTTGGGCCACTTTTGCGTCTACCGTTTAGCGC-TGGCCATG-ATGACTATGTGAC 362
|||||||||| || ||| ||| ||| || ||||| || ||| || | | | || | |
Sbjct 755 AGAGATTTGGACCGCTTCTGCCTCTGCCATTTAGTGCTTGG-GGTGCACG-GTTTGCGTC 812
Query 363 TTTATCTT-GTGTTAGAGAAGAGAAGCTTGCGGCTTTACTTAC-GCACAACGACTGGAAT 420
|||||| | ||||||||||| ||| | | |||||| || | | | || | | |||
Sbjct 813 ACTATCTTCG-GTTAGAGAAGAAAAGATCACTGCTTTA-TTTCAG-A-AAAG-C--GAA- 864
Query 421 CCATATGAGTTTGAGATATGGATCACGACTAAGATCGAGTATGATAAAGTGTCGTGGAGC 480
||||| | |||||||||||||| ||||||| ||| ||| | || ||| ||||||||
Sbjct 865 ACATATAAATTTGAGATATGGATTACGACTACGATTGAGGCCAACAATGTGACGTGGAGC 924
Query 481 AAGATCTTGGA-AATGGATACA--GGACCATTGGCTGACATGCCGATTGCATATATACAT 537
|| |||| | ||||||||| ||| ||| | | ||| | || |||||| |
Sbjct 925 AATTTCTT-CACGATGGATACATTATACC-TTGAC-CAAATG-C--TT--TTATATA-A- 974
Query 538 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCTCCA-TGGTTTTTGA 584
|||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 975 --GAGTTTCTTCATTGACGAGGAGAAGAAAGT-TGCTGTGGTTTTTGA 1019
> Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1
Length=1236
Score = 122 bits (66), Expect = 3e-27
Identities = 506/705 (72%), Gaps = 83/705 (12%)
Strand=Plus/Plus
Query 125 GGTATGAAATCTACGATATTGAAACCGATTTATGGACAACTCTTGATGTCCCTCCATA-T 183
||||||||||||||||| |||| |||||||||| |||||||| || ||||| | |
Sbjct 533 GGTATGAAATCTACGATTTTGACTTTAATTTATGGACGACTCTTGACGTTACTCCACACT 592
Query 184 --TG--GATAGTA-T--CGT-GTTATC--AGC-GTGGTGTTTCTCTCAAGGGAAATACCT 232
|| | | || | ||| ||| || | | ||||||| |||||||||| || || |
Sbjct 593 GGTGTTTAAATTATTGCCGTGGTTTTCGTAACTATGGTGTTACTCTCAAGGGTAACACTT 652
Query 233 ACTTTTGTGCTACAAAAAGTAACGCAATAAACAAAAT-C--GACGATCACATAATCTGTT 289
||| ||||||| || ||| ||| | |||| | | | ||||||||||||||||
Sbjct 653 ACTGGTGTGCTATAAGAAGGAACTC---AAACGCTTTGCGTGTTGATCACATAATCTGTT 709
Query 290 TTGATTTCACAAGTGAGAGATTTGGGCCACTTTTGCGTCTACCG--T-TTAGCGCT-GGC 345
||||||| |||||||||||||| || || ||| || | | ||| | |||| | | ||
Sbjct 710 TTGATTTTACAAGTGAGAGATTCGGTCCGCTTATGTATTTGCCGTTTATTAGAGATAGG- 768
Query 346 CATG-ATGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCTTTACTTAC 404
|| | | || ||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 769 TGTGCAAGCCT-TGTGACTCTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTTTTATTTT- 826
Query 405 GCACAACGACTGGAATCCATATGAGTTTGAGATATGGATCACGACTAAGATCGAGTATGA 464
| | | | || | | | | | || ||| ||||||| ||||||||||| ||| ||
Sbjct 827 GTT-A-CTA-TG-A-TAC-T--G--TT-GAGGTATGGATTACGACTAAGATTGAGGCCGA 875
Query 465 TAAAG-TGTCGTGGAGCAAGATCTTGGAAA-TGGATACAGGACCATTGGCTGACATGCCG 522
|||| |||||||||||||| ||||| | | || | | | | || | |||| | | |
Sbjct 876 -AAAGATGTCGTGGAGCAAGTTCTTG-ACAGTGAA-A-ATGT--AT-GT-TGACCTTCTG 927
Query 523 -ATTGCATATATA-CATGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCTCC-ATGGTT 579
||| || || | || |||||||| |||||||||||| ||||||||| | | ||| ||
Sbjct 928 GATT-CACATGCAGCA-GGGAGTTTTTTCATTGACGAGCTGAAGAAAGT-TGCTATGATT 984
Query 580 TTTGATC-ACC-A--CAG-AGTC---A-ACA-T-CA--T--TGGAAAAA-CTGGATATTT 623
|||||| ||| | || | || | ||| | || | ||| | | ||||||| |
Sbjct 985 TTTGATAGACCGATGCATCA-TCGCGACACAGTTCACATCGTGGGAGAGGCTGGATACGT 1043
Query 624 TAGAGAATTGGATCTCCGAGTACATGTAGCCGGCATAA-AGTGTAGGCCACATT-TGTGC 681
|| |||| ||||||| ||| || || | | || || | | | |||| || |||||
Sbjct 1044 TAAAGAAGTGGATCTAGGAGAACCTG-AT--GACA-AATACTTTTTCCCAC-TTGTGTGC 1098
Query 682 CCTTACGTTCCAAATTCAATGCAAATCAA-ACAACCTCCGGGAGGCAAAAGGAAACGA-A 739
|||| ||||||| || | | |||||||| | ||||| | |||||| ||||||||| | |
Sbjct 1099 TCTTATGTTCCAAGTTTAGTACAAATCAAGA-AACCTGCAGGAGGCCAAAGGAAACAACA 1157
Query 740 AACCCA-TTCTAGAACAGCGTCGATATGACCAAAACATGTTGAGA 783
|| | | || ||||| | ||||||| ||| |||||||| | ||||
Sbjct 1158 AAGC-AGTT-TAGAAAAACGTCGATGTGATCAAAACATATCGAGA 1200
> Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1
Length=1263
Score = 73.1 bits (39), Expect = 3e-12
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 538 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCTCCATGGTTTTTGAT 585
||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1007 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGAT 1054
> Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461
Length=1110
Score = 73.1 bits (39), Expect = 3e-12
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 538 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCTCCATGGTTTTTGAT 585
||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 919 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGAT 966
> Ahg342633 jgi|Araly1|342633|fgenesh1_pg.C_scaffold_3002396
Length=1092
Score = 73.1 bits (39), Expect = 3e-12
Identities = 158/212 (75%), Gaps = 21/212 (10%)
Strand=Plus/Plus
Query 280 ATAATCTGTTTTGATTTCACAA-GTGAGAGATTTGGGCCACT-TTTGCGTCTACCGTTTA 337
||| ||||||||||||| |||| | || |||||||| || | ||||| ||| || |||
Sbjct 658 ATATTCTGTTTTGATTTTACAACG-GAAAGATTTGGACC-TTGTTTGCATCTGCCCTTT- 714
Query 338 GCGCTGGCCATGATGAC-TATGTGACTTTATCTTGTGTTAGAGAAGAG-AAGCTTGCGGC 395
| | | || | || ||||||||||||||||||||||||||||| || |||||||
Sbjct 715 GATTTTG--TTGGT-ACGGATGTGACTTTATCTTGTGTTAGAGAAGAGCAA-CTTGCGGT 770
Query 396 -TTTACT--TACGCA-CAACGACTGGAATCCATATGAGTTTGAGATATGGATCACGACTA 451
||| || || || | ||| || | | |||| || | ||||||||||| || ||||
Sbjct 771 ATTTGCTCATA-GCTGCGT-GACAGGTA-C-ATATAAGATGGAGATATGGATTACAACTA 826
Query 452 AGATCGAGTATGA-TAAAGTGTCGTGGAGCAA 482
|||| || | | | |||||||||||||||
Sbjct 827 AGATTGA-TCCCAATGCAGTGTCGTGGAGCAA 857
> Ahg929886 jgi|Araly1|929886|scaffold_302343.1
Length=742
Score = 63.9 bits (34), Expect = 2e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 537 TGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCTCCATGGTT 579
||| |||||||||||||||||||||||||||||| || |||||
Sbjct 399 TGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 441
> Ahg929147 jgi|Araly1|929147|scaffold_301604.1
Length=1290
Score = 60.2 bits (32), Expect = 2e-08
Identities = 82/105 (78%), Gaps = 8/105 (8%)
Strand=Plus/Plus
Query 469 GTGTCGTGGAGCAAGAT-CTTGGAAA-TGGATA-CAGGACCATTGGCTGACATGCCGATT 525
||||||||||||||| | || | ||| |||||| || |||| | ||| | ||| ||
Sbjct 931 GTGTCGTGGAGCAAGTTTCT-G-AAAGTGGATATCAC-ACCACTCACTGGTTTTCCGGTT 987
Query 526 G-CATATATACATGGGAGTTTCTTCATTGACGAGGAGAAGAAAGT 569
| ||| || | || |||||||||||||||||||||||||||||
Sbjct 988 GACATTTACGC-TGATAGTTTCTTCATTGACGAGGAGAAGAAAGT 1031
> Ahg929032 jgi|Araly1|929032|scaffold_301489.1
Length=1468
Score = 58.4 bits (31), Expect = 9e-08
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 537 TGGGAGTTTCTTCATTGACGAGGAGAAGAAA 567
|||||||||||||||||||||||||||||||
Sbjct 1352 TGGGAGTTTCTTCATTGACGAGGAGAAGAAA 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5