BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04280.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477689 jgi|Araly1|477689|fgenesh2_kg.3__390__AT3G04280.3 651 0.0
> Ahg477689 jgi|Araly1|477689|fgenesh2_kg.3__390__AT3G04280.3
Length=665
Score = 651 bits (352), Expect = 0.0
Identities = 513/586 (88%), Gaps = 29/586 (5%)
Strand=Plus/Plus
Query 188 ATTCTTGAGAGAAAAGAAATCGAAGATGGCAACAAAATCCACCGGAGGTACCGAGAAAAC 247
||||||||||||||||||||||||||||| | || || | |||||| ||||||||
Sbjct 76 ATTCTTGAGAGAAAAGAAATCGAAGATGG---C--AA--CA--GAAGGTACTGAGAAAAC 126
Query 248 CAAGTCGATAGAAGTGAAGAAGAAACTAATCAACGTGTTGATCGTCGATGATGATCCATT 307
||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 127 TAAGTCAACAGAAGTGAAGAAGAAACT-A--AACGTGTTGATCGTCGATGATGATCCATT 183
Query 308 AAACCGTAGACTCCACGAGATGATCATCAAAACGATCGGAGGAATTTCTCAGACTGCAAA 367
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 184 AAACTGTAGACTCCACGAGATGATCATCAAAACGATCGGAGGAATTTCTCAGACGGCAAA 243
Query 368 GAATGGCGAGGAGGCAGTGATCCTCCACCGTGACGGCGAAGCATCTTTCGACCTTATTCT 427
|||||| |||||||| ||||| ||||||| | ||| | ||||||||||||||||||||
Sbjct 244 GAATGGTGAGGAGGCTGTGATTCTCCACC--G-CGGTGGGGCATCTTTCGACCTTATTCT 300
Query 428 AATGGATAAGGAAATGCCTGAGAGGGATGGAGTTTCGACAACTAAGAAGCTAAGAGAAAT 487
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATGGATAAGGAAATGCCCGAGAGGGATGGAGTTTCGACAACTAAGAAGCTAAGAGAAAT 360
Query 488 GAAAGTGACGTCAATGATCGTTGGGGTAACGTCAGTAGCTGACCAAGAAGAAGAGCGTAA 547
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 GAAAGTGACGTCAATGATTGTTGGGGTAACGTCACTAGCTGACCAAGAAGAAGAGCGTAA 420
Query 548 GGCTTTTATGGAAGCTGGGCTCAACCATTGCTTGGAAAAACCCTTAACCAAGGCCAAGAT 607
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGCTTTTATGGAAGCCGGACTTAACCATTGCTTGGAAAAACCCTTAACCAAGGCCAAGAT 480
Query 608 CTTCCCGCTCATTAGCCACCTCTTCGATGCTTGATGGATGAAGGCTCATTAATGTATC-T 666
| |||| ||||||| ||| ||| | | |||||||||||||| ||||||||||| | || |
Sbjct 481 CCTCCCTCTCATTAACCATCTCCTGGGTGCTTGATGGATGACGGCTCATTAAT-T-TCCT 538
Query 667 ATATTTT-CAATCA-TGAA-ATCACCTACACGTGTATTTGACACAAAAATCTGCAT---T 720
| | | ||| || || | ||| |||||||||| |||||| | | |||||||| |
Sbjct 539 AAAAAATACAA-CAATGTCTA-CACGTACACGTGTACTTGACATATATATCTGCATGCGT 596
Query 721 TG-TTGTG-A-TATAGGGTTTCTCATATCTATGTTTGATTTATTTT 763
| || || | | |||||||||| |||||||||| |||||| ||||
Sbjct 597 TTCTTTTGGAATTTAGGGTTTCTTATATCTATGTCTGATTTCTTTT 642
Score = 71.3 bits (38), Expect = 1e-11
Identities = 57/65 (88%), Gaps = 5/65 (8%)
Strand=Plus/Plus
Query 1 ATATTAGTTTGTTATACAACTC---ACTTAGAA--TAATGTAGATTACATTTCAGCCAAA 55
||||| |||||||| ||||||| | |||||| |||||||||||||||||||||||||
Sbjct 11 ATATTTGTTTGTTAAACAACTCATGAGTTAGAATGTAATGTAGATTACATTTCAGCCAAA 70
Query 56 TTCAT 60
|||||
Sbjct 71 TTCAT 75
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5