BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04280.1 Length=835 Score E Sequences producing significant alignments: (Bits) Value Ahg477689 jgi|Araly1|477689|fgenesh2_kg.3__390__AT3G04280.3 651 0.0 > Ahg477689 jgi|Araly1|477689|fgenesh2_kg.3__390__AT3G04280.3 Length=665 Score = 651 bits (352), Expect = 0.0 Identities = 513/586 (88%), Gaps = 29/586 (5%) Strand=Plus/Plus Query 188 ATTCTTGAGAGAAAAGAAATCGAAGATGGCAACAAAATCCACCGGAGGTACCGAGAAAAC 247 ||||||||||||||||||||||||||||| | || || | |||||| |||||||| Sbjct 76 ATTCTTGAGAGAAAAGAAATCGAAGATGG---C--AA--CA--GAAGGTACTGAGAAAAC 126 Query 248 CAAGTCGATAGAAGTGAAGAAGAAACTAATCAACGTGTTGATCGTCGATGATGATCCATT 307 ||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 127 TAAGTCAACAGAAGTGAAGAAGAAACT-A--AACGTGTTGATCGTCGATGATGATCCATT 183 Query 308 AAACCGTAGACTCCACGAGATGATCATCAAAACGATCGGAGGAATTTCTCAGACTGCAAA 367 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 184 AAACTGTAGACTCCACGAGATGATCATCAAAACGATCGGAGGAATTTCTCAGACGGCAAA 243 Query 368 GAATGGCGAGGAGGCAGTGATCCTCCACCGTGACGGCGAAGCATCTTTCGACCTTATTCT 427 |||||| |||||||| ||||| ||||||| | ||| | |||||||||||||||||||| Sbjct 244 GAATGGTGAGGAGGCTGTGATTCTCCACC--G-CGGTGGGGCATCTTTCGACCTTATTCT 300 Query 428 AATGGATAAGGAAATGCCTGAGAGGGATGGAGTTTCGACAACTAAGAAGCTAAGAGAAAT 487 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AATGGATAAGGAAATGCCCGAGAGGGATGGAGTTTCGACAACTAAGAAGCTAAGAGAAAT 360 Query 488 GAAAGTGACGTCAATGATCGTTGGGGTAACGTCAGTAGCTGACCAAGAAGAAGAGCGTAA 547 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 361 GAAAGTGACGTCAATGATTGTTGGGGTAACGTCACTAGCTGACCAAGAAGAAGAGCGTAA 420 Query 548 GGCTTTTATGGAAGCTGGGCTCAACCATTGCTTGGAAAAACCCTTAACCAAGGCCAAGAT 607 ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct 421 GGCTTTTATGGAAGCCGGACTTAACCATTGCTTGGAAAAACCCTTAACCAAGGCCAAGAT 480 Query 608 CTTCCCGCTCATTAGCCACCTCTTCGATGCTTGATGGATGAAGGCTCATTAATGTATC-T 666 | |||| ||||||| ||| ||| | | |||||||||||||| ||||||||||| | || | Sbjct 481 CCTCCCTCTCATTAACCATCTCCTGGGTGCTTGATGGATGACGGCTCATTAAT-T-TCCT 538 Query 667 ATATTTT-CAATCA-TGAA-ATCACCTACACGTGTATTTGACACAAAAATCTGCAT---T 720 | | | ||| || || | ||| |||||||||| |||||| | | |||||||| | Sbjct 539 AAAAAATACAA-CAATGTCTA-CACGTACACGTGTACTTGACATATATATCTGCATGCGT 596 Query 721 TG-TTGTG-A-TATAGGGTTTCTCATATCTATGTTTGATTTATTTT 763 | || || | | |||||||||| |||||||||| |||||| |||| Sbjct 597 TTCTTTTGGAATTTAGGGTTTCTTATATCTATGTCTGATTTCTTTT 642 Score = 71.3 bits (38), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 5/65 (8%) Strand=Plus/Plus Query 1 ATATTAGTTTGTTATACAACTC---ACTTAGAA--TAATGTAGATTACATTTCAGCCAAA 55 ||||| |||||||| ||||||| | |||||| ||||||||||||||||||||||||| Sbjct 11 ATATTTGTTTGTTAAACAACTCATGAGTTAGAATGTAATGTAGATTACATTTCAGCCAAA 70 Query 56 TTCAT 60 ||||| Sbjct 71 TTCAT 75 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30879562770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5