BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04290.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477690 jgi|Araly1|477690|fgenesh2_kg.3__391__AT3G04290.1 2346 0.0
> Ahg477690 jgi|Araly1|477690|fgenesh2_kg.3__391__AT3G04290.1
Length=1496
Score = 2346 bits (1270), Expect = 0.0
Identities = 1408/1474 (96%), Gaps = 12/1474 (1%)
Strand=Plus/Plus
Query 7 CACACTCTCCATATGCTCTCATATCATACGTCAATTTATAAAC-GTT-T--CTTCTCATT 62
|||||||||||||||||| || |||||||||||||| | |||| || | |||||||||
Sbjct 1 CACACTCTCCATATGCTCACAAATCATACGTCAATTGA-AAACATTTCTAGCTTCTCATT 59
Query 63 CGTCATCTAGTCCCATTCTCTGTCCATAACAATGAATATCAATTGTTCTCCATTAGGGTT 122
|||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||
Sbjct 60 CGTCATCTAGTCCCATTCTCTGCCCCTAACTATGGATATCAATTGTTCTCCATTAGGGTT 119
Query 123 TCTAATTTCACTCTTCTTCATTGTTACTTTTCTTGCACCACAAGTCAAATCTAGGGCTTT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTAATTTCACTCTTCTTCATTGTTACTTTTCTTGCACCACAAGTCAAATCTAGGGCTTT 179
Query 183 CTTTGTCTTTGGTGACTCTCTCGTCGACAATGGAAACAACGACTACCTCGTCACCACTGC 242
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 CTTTGTCTTCGGTGACTCTCTCGTCGACAATGGAAACAACGATTACCTCGTCACCACTGC 239
Query 243 CCGTGCCGACAATTACCCGTATGGTATCGACTACCCGACCCGTAGACCCACCGGACGTTT 302
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCGCGCCGACAATTACCCGTATGGTATCGACTACCCGACCCGTAGACCCACCGGACGTTT 299
Query 303 CTCTAACGGCCTTAACATTCCCGACATTATCAGTGAGGCTATAGGCATGCCGTCGACTTT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCTAACGGCCTTAACATTCCCGACATTATCAGTGAGGCTATAGGCATGCCGTCGACTTT 359
Query 363 GCCGTACCTTAGCCCGCATCTCACCGGAGAAAATCTTCTAGTCGGTGCTAATTTTGCCTC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCCGTACCTTAGCCCGCATCTCACCGGAGAAAATCTTCTAGTCGGTGCTAATTTTGCCTC 419
Query 423 CGCAGGAATTGGAATCCTCAACGACACTGGAATTCAATTCGTAAACATAATTAGAATTTC 482
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 CGCCGGAATTGGAATCCTCAACGATACTGGAATTCAATTCGTAAACATAATTAGAATTTC 479
Query 483 TAAACAGATGGAATACTTCGAACAGTACCAGCTACGAGTGAGTGCATTGATCGGACCAGA 542
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 TAAACAGATGGAATACTTCGAACAGTACCAGCAACGAGTGAGTGCATTGATCGGACCAGA 539
Query 543 AGCTACACAACAGCTAGTTAACCAAGCTCTTGTCCTAATTACACTCGGTGGTAATGATTT 602
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AGCTACACAACAGCTAGTTAACCAAGCTCTTGTCCTAATCACACTCGGTGGTAATGATTT 599
Query 603 CGTCAACAATTATTATCTAATTCCGTTTTCAGCTCGTTCTCGCCAATACGCGTTACCAGA 662
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 CGTCAACAATTATTATCTAGTTCCGTTTTCAGCTCGTTCTCGCCAATTCGCGTTACCAGA 659
Query 663 CTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAAAACTCTACGAACTGGG 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAAAACTCTACGAACTGGG 719
Query 723 TGCAAGACGAGTTTTGGTAACTGGAACTGGTGCAATGGGATGTGCTCCCGCGGAGCTGGC 782
|||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 720 AGCAAGAAGAGTTTTAGTAACTGGAACGGGTGCGATGGGATGTGCTCCCGCGGAGCTGGC 779
Query 783 TCAGCATAGCCGCAATGGCGAGTGCTATGGCGCCCTCCAAACAGCAGCCGCTTTGTTCAA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCAGCATAGCCGCAATGGCGAGTGCTATGGCGCCCTCCAAACAGCAGCCGCTTTGTTCAA 839
Query 843 TCCGCAATTAGTTGATTTGATCGCATCAGTCAATGCTGAAATTGGTCAAGACGTGTTTGT 902
||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 840 TCCACGATTAGTTGATTTGATCGCATCAGTCAATGCTGAGATTGGTCAAGACGTTTTTGT 899
Query 903 AGCAGCCAATGCCTATCAAATGAACATGGATTATCTATCTAATCCTGAACAATTTGGGTT 962
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 900 AGCAGCCAATGCCTATCAAATGAACATGGATTATCTAACTAATCCTGAACAATTTGGGTT 959
Query 963 TGTGACATCGAAGGTGGCATGTTGTGGACAAGGACCGTACAATGGCATAGGACTATGCAC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGTGACATCGAAGGTGGCATGTTGTGGACAAGGACCGTACAATGGCATAGGACTATGCAC 1019
Query 1023 ACCAGTCTCGAATTTGTGTCCGAATAGAGACTTATATGCGTTTTGGGATGCGTTTCATCC 1082
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACCAATCTCGAATTTGTGTCCGAATAGAGACTTATATGCGTTTTGGGATGCGTTTCATCC 1079
Query 1083 GACAGAGAAAGCCAATAGGATCATCGTTAATCAGATCCTGACTGGTTCCTCCAAGTATAT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GACAGAGAAAGCCAATAGGATCATCGTTAATCAGATCCTGACTGGTTCCTCCAAGTATAT 1139
Query 1143 GCACCCTATGAATCTTAGCACGGCCATGCTATTGGATTCTTCTAAAATCTAGTTTAAGTG 1202
||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||
Sbjct 1140 GCACCCTATGAATCTTAGCACCGCCATGCTCTTGGATTCTTCTAGAATCTAATTTAAGTG 1199
Query 1203 ATTTCTGTCAACTAAATGTCA-GGTCATTCCTTCTG-TACTTTGCATTGTTGTTAATGTG 1260
|||| |||||||||||||||| ||||||||| ||| |||||||||||||| ||| ||||
Sbjct 1200 ATTTATGTCAACTAAATGTCAAGGTCATTCCA-CTGGTACTTTGCATTGTTATTACTGTG 1258
Query 1261 -TTGATTAATAAGTTCAATGGCTACAATTAGTTTAAGCATGCAAGAGAGTTTTTATTGTC 1319
|| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1259 GTT-ATTAATAAGTTTGATGGCTACAACTAGTTAAAGCATGCAAGAGAGTTTTTATTGTC 1317
Query 1320 GGTCGTCTAGTTTGATGTCTTTGCTTGTTGTATCTTGTTAttttttttATTTTATAAAAG 1379
|||||| |||||||||| |||||||||||||| |||||| |||||||| |||| ||||||
Sbjct 1318 GGTCGTGTAGTTTGATGCCTTTGCTTGTTGTAGCTTGTTTTTTTTTTTTTTTTTTAAAAG 1377
Query 1380 AACCGTTGTATCTTGGTTAGCTTAGTTTAGTCTTTTTTGGTTTGTATGCCAATTATATCA 1439
| | |||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||
Sbjct 1378 ATCTGTTGTATCTTGGTTAGCTTAGTTTAGTCCTTTTTGGTGTGTGTGCCAATTAT--CA 1435
Query 1440 TGTAATATTTGAAAACTTGTAGTGATTGATATAT 1473
||||||||||| | ||||| ||||||||||||||
Sbjct 1436 TGTAATATTTGGAGACTTGGAGTGATTGATATAT 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5