BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04290.1 Length=1494 Score E Sequences producing significant alignments: (Bits) Value Ahg477690 jgi|Araly1|477690|fgenesh2_kg.3__391__AT3G04290.1 2346 0.0 > Ahg477690 jgi|Araly1|477690|fgenesh2_kg.3__391__AT3G04290.1 Length=1496 Score = 2346 bits (1270), Expect = 0.0 Identities = 1408/1474 (96%), Gaps = 12/1474 (1%) Strand=Plus/Plus Query 7 CACACTCTCCATATGCTCTCATATCATACGTCAATTTATAAAC-GTT-T--CTTCTCATT 62 |||||||||||||||||| || |||||||||||||| | |||| || | ||||||||| Sbjct 1 CACACTCTCCATATGCTCACAAATCATACGTCAATTGA-AAACATTTCTAGCTTCTCATT 59 Query 63 CGTCATCTAGTCCCATTCTCTGTCCATAACAATGAATATCAATTGTTCTCCATTAGGGTT 122 |||||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||| Sbjct 60 CGTCATCTAGTCCCATTCTCTGCCCCTAACTATGGATATCAATTGTTCTCCATTAGGGTT 119 Query 123 TCTAATTTCACTCTTCTTCATTGTTACTTTTCTTGCACCACAAGTCAAATCTAGGGCTTT 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TCTAATTTCACTCTTCTTCATTGTTACTTTTCTTGCACCACAAGTCAAATCTAGGGCTTT 179 Query 183 CTTTGTCTTTGGTGACTCTCTCGTCGACAATGGAAACAACGACTACCTCGTCACCACTGC 242 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 CTTTGTCTTCGGTGACTCTCTCGTCGACAATGGAAACAACGATTACCTCGTCACCACTGC 239 Query 243 CCGTGCCGACAATTACCCGTATGGTATCGACTACCCGACCCGTAGACCCACCGGACGTTT 302 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CCGCGCCGACAATTACCCGTATGGTATCGACTACCCGACCCGTAGACCCACCGGACGTTT 299 Query 303 CTCTAACGGCCTTAACATTCCCGACATTATCAGTGAGGCTATAGGCATGCCGTCGACTTT 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CTCTAACGGCCTTAACATTCCCGACATTATCAGTGAGGCTATAGGCATGCCGTCGACTTT 359 Query 363 GCCGTACCTTAGCCCGCATCTCACCGGAGAAAATCTTCTAGTCGGTGCTAATTTTGCCTC 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GCCGTACCTTAGCCCGCATCTCACCGGAGAAAATCTTCTAGTCGGTGCTAATTTTGCCTC 419 Query 423 CGCAGGAATTGGAATCCTCAACGACACTGGAATTCAATTCGTAAACATAATTAGAATTTC 482 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 420 CGCCGGAATTGGAATCCTCAACGATACTGGAATTCAATTCGTAAACATAATTAGAATTTC 479 Query 483 TAAACAGATGGAATACTTCGAACAGTACCAGCTACGAGTGAGTGCATTGATCGGACCAGA 542 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 480 TAAACAGATGGAATACTTCGAACAGTACCAGCAACGAGTGAGTGCATTGATCGGACCAGA 539 Query 543 AGCTACACAACAGCTAGTTAACCAAGCTCTTGTCCTAATTACACTCGGTGGTAATGATTT 602 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 540 AGCTACACAACAGCTAGTTAACCAAGCTCTTGTCCTAATCACACTCGGTGGTAATGATTT 599 Query 603 CGTCAACAATTATTATCTAATTCCGTTTTCAGCTCGTTCTCGCCAATACGCGTTACCAGA 662 ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 600 CGTCAACAATTATTATCTAGTTCCGTTTTCAGCTCGTTCTCGCCAATTCGCGTTACCAGA 659 Query 663 CTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAAAACTCTACGAACTGGG 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 CTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAAAACTCTACGAACTGGG 719 Query 723 TGCAAGACGAGTTTTGGTAACTGGAACTGGTGCAATGGGATGTGCTCCCGCGGAGCTGGC 782 |||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 720 AGCAAGAAGAGTTTTAGTAACTGGAACGGGTGCGATGGGATGTGCTCCCGCGGAGCTGGC 779 Query 783 TCAGCATAGCCGCAATGGCGAGTGCTATGGCGCCCTCCAAACAGCAGCCGCTTTGTTCAA 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TCAGCATAGCCGCAATGGCGAGTGCTATGGCGCCCTCCAAACAGCAGCCGCTTTGTTCAA 839 Query 843 TCCGCAATTAGTTGATTTGATCGCATCAGTCAATGCTGAAATTGGTCAAGACGTGTTTGT 902 ||| | ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 840 TCCACGATTAGTTGATTTGATCGCATCAGTCAATGCTGAGATTGGTCAAGACGTTTTTGT 899 Query 903 AGCAGCCAATGCCTATCAAATGAACATGGATTATCTATCTAATCCTGAACAATTTGGGTT 962 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 900 AGCAGCCAATGCCTATCAAATGAACATGGATTATCTAACTAATCCTGAACAATTTGGGTT 959 Query 963 TGTGACATCGAAGGTGGCATGTTGTGGACAAGGACCGTACAATGGCATAGGACTATGCAC 1022 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TGTGACATCGAAGGTGGCATGTTGTGGACAAGGACCGTACAATGGCATAGGACTATGCAC 1019 Query 1023 ACCAGTCTCGAATTTGTGTCCGAATAGAGACTTATATGCGTTTTGGGATGCGTTTCATCC 1082 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 ACCAATCTCGAATTTGTGTCCGAATAGAGACTTATATGCGTTTTGGGATGCGTTTCATCC 1079 Query 1083 GACAGAGAAAGCCAATAGGATCATCGTTAATCAGATCCTGACTGGTTCCTCCAAGTATAT 1142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 GACAGAGAAAGCCAATAGGATCATCGTTAATCAGATCCTGACTGGTTCCTCCAAGTATAT 1139 Query 1143 GCACCCTATGAATCTTAGCACGGCCATGCTATTGGATTCTTCTAAAATCTAGTTTAAGTG 1202 ||||||||||||||||||||| |||||||| ||||||||||||| |||||| |||||||| Sbjct 1140 GCACCCTATGAATCTTAGCACCGCCATGCTCTTGGATTCTTCTAGAATCTAATTTAAGTG 1199 Query 1203 ATTTCTGTCAACTAAATGTCA-GGTCATTCCTTCTG-TACTTTGCATTGTTGTTAATGTG 1260 |||| |||||||||||||||| ||||||||| ||| |||||||||||||| ||| |||| Sbjct 1200 ATTTATGTCAACTAAATGTCAAGGTCATTCCA-CTGGTACTTTGCATTGTTATTACTGTG 1258 Query 1261 -TTGATTAATAAGTTCAATGGCTACAATTAGTTTAAGCATGCAAGAGAGTTTTTATTGTC 1319 || ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1259 GTT-ATTAATAAGTTTGATGGCTACAACTAGTTAAAGCATGCAAGAGAGTTTTTATTGTC 1317 Query 1320 GGTCGTCTAGTTTGATGTCTTTGCTTGTTGTATCTTGTTAttttttttATTTTATAAAAG 1379 |||||| |||||||||| |||||||||||||| |||||| |||||||| |||| |||||| Sbjct 1318 GGTCGTGTAGTTTGATGCCTTTGCTTGTTGTAGCTTGTTTTTTTTTTTTTTTTTTAAAAG 1377 Query 1380 AACCGTTGTATCTTGGTTAGCTTAGTTTAGTCTTTTTTGGTTTGTATGCCAATTATATCA 1439 | | |||||||||||||||||||||||||||| |||||||| ||| |||||||||| || Sbjct 1378 ATCTGTTGTATCTTGGTTAGCTTAGTTTAGTCCTTTTTGGTGTGTGTGCCAATTAT--CA 1435 Query 1440 TGTAATATTTGAAAACTTGTAGTGATTGATATAT 1473 ||||||||||| | ||||| |||||||||||||| Sbjct 1436 TGTAATATTTGGAGACTTGGAGTGATTGATATAT 1469 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55916479660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5