BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04300.1
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477691 jgi|Araly1|477691|fgenesh2_kg.3__392__AT3G04300.1 933 0.0
> Ahg477691 jgi|Araly1|477691|fgenesh2_kg.3__392__AT3G04300.1
Length=614
Score = 933 bits (505), Expect = 0.0
Identities = 579/615 (94%), Gaps = 4/615 (1%)
Strand=Plus/Plus
Query 1 GTCCTTCACCATATAAATACATCTCATATACCTACTTTCTTCTTATCTTTGTT-CTCACT 59
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1 GTCCTTCACCATATAAATACATCTCAAATACCTACTTTCTTCTTATCTTTCTTGCTCACT 60
Query 60 GTTTCTTTCTGTTCTATCTAATAACATTGAAACATCGTCGAATTCTCACCTTATTCCTCT 119
||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 61 GTTTCTTTCTGTTCTATCTAATAGCATTGAAACATCGTCAAATTCTCCCCTTATTCCTCT 120
Query 120 TCCAAAATGAATATTGTAATCGAAAACAACCCTTCGAGCAGAAGGTTATCTGACCTTGGA 179
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 121 TCCAAAATGAATATTGTAATCGAAAACAACCCTTCAAGCAGAAGGTTATCCGACGTTGGA 180
Query 180 GTCATGTCATGGCCTAAATGGTCTTGTCAGCCGGGGAAATATGCATTGGTATTTGAAGAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCATGTCATGGCCTAAATGGTCTTGTCAGCCGGGGAAATATGCATTGGTATTTGAAGAA 240
Query 240 AGAGAGACATGCTATTTGGTGAAGGGAAAGGTGAAGGTGTATCCAAAAGGGTCATCTGAG 299
||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 AGAGAAACATGCTATTTAGTGAAGGGAAAGGTGAAGGTGTATCTAAAAGGGTCATCTGAG 300
Query 300 TTTGTAGAGTTTGGTGCAGGAGACCTTGTGACCATCCCCAAGGGACTTAGCTGCACTTGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTGTAGAGTTTGGTGCAGGAGACCTTGTGACCATCCCCAAGGGACTTAGCTGCACTTGG 360
Query 360 GATGTATCACTTTTCATAGACAAACACTACAAGTTCGATCCTCCTACTTCTCCATAATTT 419
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 GATGTATCACTTTTCATCGACAAACACTACAAGTTCGATCCTCCTACTTCTCCATAATAT 420
Query 420 TTCCTAACTACAATCTAGTTTTGGGTTAGTCTTTATCACCACGAAGCATAAAAGACTCTA 479
||||||| ||||||||| || | ||||||||||||||| || |||||||| |||||||||
Sbjct 421 TTCCTAATTACAATCTACTTCTCGGTTAGTCTTTATCATCATGAAGCATAGAAGACTCTA 480
Query 480 TATTCAGACAATAAAATATAGAAGAGAAACCAAAAAGATAATGCTT-AGGATACGTGTAA 538
| |||||||| ||| |||| ||||||||||||||||||||||||| || |||||| ||
Sbjct 481 TTTTCAGACACTAAGTTATAAAAGAGAAACCAAAAAGATAATGCTTTAGAATACGTACAA 540
Query 539 AGCCCTTCCTAGATTATGTTTTCAGATGTAACTTCTTTGTTTCTCATAGAACAAA-CAAT 597
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 541 AGCCCTTCCTAGATTATGTTTTCAGATGTAACTTCTTTGTTTGTCATAGAA-AAAGCAAT 599
Query 598 CGGCACATGCCAATA 612
||| |||||||||
Sbjct 600 TTGCATATGCCAATA 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26609796066
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5